Wall clock time and date at job start Sat Apr 11 2020 08:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35431 * 117.00186 * 2 1 4 4 N 1.32240 * 119.79911 * 0.28792 * 3 2 1 5 5 C 1.31878 * 121.80138 * 180.33936 * 4 3 2 6 6 C 1.50698 * 119.41145 * 179.67877 * 5 4 3 7 7 C 1.38364 * 121.18084 * 359.65664 * 5 4 3 8 8 C 1.38328 * 119.45997 * 0.02562 * 7 5 4 9 9 C 1.39982 * 118.35346 * 359.97438 * 8 7 5 10 10 C 1.47522 * 120.59975 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99691 * 233.76011 * 10 9 8 12 12 N 1.34774 * 119.99932 * 53.75995 * 10 9 8 13 13 C 1.46928 * 120.62770 * 175.77676 * 12 10 9 14 14 C 1.53189 * 108.89224 * 233.67253 * 13 12 10 15 15 C 1.53043 * 109.31608 * 305.29659 * 14 13 12 16 16 H 1.08992 * 109.46459 * 181.38299 * 15 14 13 17 17 C 1.52998 * 109.45757 * 301.34609 * 15 14 13 18 18 C 1.53039 * 109.53612 * 61.36202 * 15 14 13 19 19 H 1.09000 * 109.49750 * 58.58721 * 18 15 14 20 20 C 1.53003 * 109.49932 * 178.68715 * 18 15 14 21 21 N 1.46498 * 109.47160 * 185.00231 * 20 18 15 22 22 C 1.36941 * 119.99872 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99996 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00138 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99826 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00284 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47351 * 89.99637 * 26 24 22 28 28 H 1.48496 * 109.47177 * 210.00280 * 26 24 22 29 29 H 1.48502 * 109.47000 * 330.00112 * 26 24 22 30 30 C 1.47195 * 120.81317 * 355.91409 * 12 10 9 31 31 H 1.09000 * 109.46651 * 60.00027 * 1 2 3 32 32 H 1.08993 * 109.46804 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46714 * 300.00506 * 1 2 3 34 34 H 1.08998 * 109.46965 * 269.97885 * 6 5 4 35 35 H 1.09007 * 109.46597 * 29.97565 * 6 5 4 36 36 H 1.08995 * 109.47023 * 149.97786 * 6 5 4 37 37 H 1.08001 * 120.26244 * 180.02562 * 7 5 4 38 38 H 1.08003 * 120.82062 * 179.97438 * 8 7 5 39 39 H 1.09002 * 109.58429 * 113.81478 * 13 12 10 40 40 H 1.08999 * 109.59039 * 353.53167 * 13 12 10 41 41 H 1.08996 * 109.49815 * 65.24775 * 14 13 12 42 42 H 1.09003 * 109.49802 * 185.34222 * 14 13 12 43 43 H 1.09001 * 109.47135 * 59.99842 * 17 15 14 44 44 H 1.09008 * 109.47162 * 179.97438 * 17 15 14 45 45 H 1.08998 * 109.47167 * 299.99739 * 17 15 14 46 46 H 1.09007 * 109.46541 * 305.00145 * 20 18 15 47 47 H 1.08997 * 109.46866 * 64.99764 * 20 18 15 48 48 H 0.97001 * 120.00223 * 359.97438 * 21 20 18 49 49 H 0.97004 * 119.99761 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.53795 * 6.54210 * 30 12 10 51 51 H 1.09002 * 109.68003 * 246.22907 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3132 0.0058 5 6 1.8771 3.5084 -0.0006 6 6 1.0001 4.7339 -0.0009 7 6 3.2527 3.6575 -0.0067 8 6 4.0588 2.5333 -0.0065 9 6 3.4451 1.2752 0.0004 10 6 4.2571 0.0436 0.0014 11 8 4.0685 -0.8096 -0.8442 12 7 5.2078 -0.1359 0.9396 13 6 5.9613 -1.3953 1.0105 14 6 5.8578 -1.9559 2.4323 15 6 6.3213 -0.8926 3.4307 16 1 6.2720 -1.2974 4.4415 17 6 7.7626 -0.4892 3.1132 18 6 5.4139 0.3355 3.3284 19 1 4.3831 0.0441 3.5302 20 6 5.8578 1.3850 4.3495 21 7 4.9184 2.5090 4.3345 22 6 5.1129 3.5751 5.1716 23 1 5.9591 3.5875 5.8426 24 6 4.2231 4.6404 5.1570 25 7 3.1922 4.6256 4.3389 26 14 4.4888 6.0951 6.2983 27 1 5.3306 7.1114 5.6174 28 1 3.1764 6.6944 6.6501 29 1 5.1706 5.6358 7.5351 30 6 5.5123 0.9221 1.9166 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.7845 5.0262 -1.0286 35 1 0.0669 4.5129 0.5174 36 1 1.5144 5.5489 0.5083 37 1 3.6933 4.6435 -0.0115 38 1 5.1350 2.6241 -0.0116 39 1 7.0072 -1.2096 0.7661 40 1 5.5426 -2.1119 0.3038 41 1 4.8229 -2.2258 2.6426 42 1 6.4900 -2.8393 2.5220 43 1 7.8124 -0.0849 2.1022 44 1 8.0928 0.2685 3.8239 45 1 8.4093 -1.3635 3.1871 46 1 5.8754 0.9393 5.3442 47 1 6.8554 1.7417 4.0935 48 1 4.1586 2.4980 3.7315 49 1 2.5702 5.3698 4.3289 50 1 4.7951 1.7357 1.8082 51 1 6.5209 1.2991 1.7472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133153943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:27:01 Heat of formation + Delta-G solvation = -46.562392 kcal Electronic energy + Delta-G solvation = -32740.553774 eV Core-core repulsion = 28639.687898 eV Total energy + Delta-G solvation = -4100.865877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.20087 -41.00632 -39.20357 -39.10453 -36.46726 -35.10590 -34.18279 -33.31308 -32.76489 -31.43647 -29.56781 -28.77990 -27.85593 -27.10695 -25.84341 -24.96303 -24.11574 -23.66682 -22.50139 -21.33407 -19.68656 -19.20761 -18.89240 -18.33513 -18.01067 -17.37273 -16.96895 -16.72489 -16.19418 -16.05113 -15.83186 -15.59612 -15.40322 -15.21151 -15.09594 -15.01223 -14.55263 -14.40010 -14.26019 -13.98569 -13.77443 -13.49907 -13.35323 -13.04513 -12.99106 -12.95002 -12.81848 -12.75075 -12.65630 -12.45545 -12.12141 -12.08311 -11.99466 -11.85442 -11.73764 -11.41984 -11.27320 -11.20714 -10.86812 -10.80938 -10.56005 -9.67751 -9.42757 -8.90902 -7.85655 -5.14527 -0.23886 0.23332 1.49537 1.51384 1.52228 1.59588 1.92692 2.01355 2.60713 2.64726 3.08609 3.42531 3.47010 3.65265 3.72908 3.82916 3.88650 3.95692 4.06084 4.15700 4.17959 4.29316 4.34468 4.35097 4.36093 4.43422 4.49819 4.61143 4.63212 4.69036 4.74978 4.76929 4.78475 4.81651 4.91447 4.93362 4.96407 5.01397 5.13424 5.14444 5.15555 5.22919 5.30937 5.39785 5.43715 5.53162 5.58035 5.61178 6.11187 6.25195 6.34237 6.73566 7.02503 7.41423 8.14721 8.39173 9.36103 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005407 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.090034 B = 5177.185010 C = 8030.787556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.346 3.654 4 N -0.551 5.551 5 C 0.183 3.817 6 C -0.101 4.101 7 C -0.201 4.201 8 C -0.003 4.003 9 C -0.231 4.231 10 C 0.577 3.423 11 O -0.567 6.567 12 N -0.597 5.597 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.079 4.079 16 H 0.079 0.921 17 C -0.148 4.148 18 C -0.093 4.093 19 H 0.045 0.955 20 C 0.162 3.838 21 N -0.742 5.742 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.064 4.064 25 N -0.955 5.955 26 Si 0.963 3.037 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.276 1.276 30 C 0.115 3.885 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.018 0.982 47 H 0.037 0.963 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.075 0.925 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -7.677 -9.089 12.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.222 6.222 3 C 0.166 3.834 4 N -0.276 5.276 5 C 0.046 3.954 6 C -0.158 4.158 7 C -0.221 4.221 8 C -0.029 4.029 9 C -0.237 4.237 10 C 0.366 3.634 11 O -0.447 6.447 12 N -0.329 5.329 13 C -0.014 4.014 14 C -0.158 4.158 15 C -0.098 4.098 16 H 0.097 0.903 17 C -0.205 4.205 18 C -0.113 4.113 19 H 0.063 0.937 20 C 0.035 3.965 21 N -0.385 5.385 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.257 4.257 25 N -0.605 5.605 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.202 1.202 30 C -0.007 4.007 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.485 -8.421 -9.380 12.848 hybrid contribution -0.078 1.098 0.700 1.305 sum 2.407 -7.323 -8.680 11.608 Atomic orbital electron populations 1.23088 0.75594 1.04630 1.02426 1.86261 1.24668 1.24289 1.87013 1.19800 0.88197 0.85253 0.90118 1.67213 1.40383 0.98502 1.21537 1.21679 0.93168 0.92217 0.88316 1.20856 0.98700 0.91846 1.04415 1.22002 0.93801 1.00782 1.05502 1.21730 1.01527 0.89612 0.90008 1.19805 0.91625 0.95658 1.16647 1.17927 0.79068 0.85489 0.80940 1.90710 1.69393 1.45621 1.38983 1.48147 1.36513 1.17660 1.30554 1.21824 0.96684 0.84608 0.98235 1.21905 1.01777 0.98839 0.93264 1.21051 0.95426 0.93458 0.99869 0.90311 1.21954 0.94497 1.02195 1.01866 1.21552 0.99303 0.96276 0.94145 0.93663 1.20821 0.93013 0.87056 0.95604 1.42556 1.30145 1.19002 1.46799 1.19526 1.07518 0.96501 1.14120 0.90970 1.25385 0.97739 1.01090 1.01479 1.69809 1.16232 1.32747 1.41729 0.85303 0.76192 0.80195 0.78980 1.21266 1.22640 1.20172 1.22017 1.02233 0.89332 0.87123 0.91758 0.86054 0.92695 0.87640 0.90769 0.89170 0.81881 0.82178 0.88884 0.90259 0.93237 0.87560 0.92293 0.92581 0.90573 0.96405 0.94470 0.79679 0.94166 0.90648 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.38 113.37 1.18 2.17 16 2 O -0.32 -11.46 9.67 -83.90 -0.81 -12.27 16 3 C 0.35 12.90 7.50 85.13 0.64 13.54 16 4 N -0.55 -19.34 9.11 -296.04 -2.70 -22.03 16 5 C 0.18 5.79 6.78 42.58 0.29 6.08 16 6 C -0.10 -2.45 10.16 71.24 0.72 -1.73 16 7 C -0.20 -6.09 9.71 22.32 0.22 -5.87 16 8 C 0.00 -0.10 7.56 22.71 0.17 0.07 16 9 C -0.23 -8.28 4.92 -19.91 -0.10 -8.38 16 10 C 0.58 20.72 6.89 86.69 0.60 21.32 16 11 O -0.57 -23.16 16.18 -0.65 -0.01 -23.17 16 12 N -0.60 -17.92 2.98 -821.97 -2.45 -20.37 16 13 C 0.11 2.59 5.94 86.36 0.51 3.10 16 14 C -0.12 -2.54 5.63 30.67 0.17 -2.37 16 15 C -0.08 -1.82 2.71 -10.77 -0.03 -1.85 16 16 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.15 -2.83 8.11 71.98 0.58 -2.25 16 18 C -0.09 -2.90 2.15 -10.71 -0.02 -2.92 16 19 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 20 C 0.16 6.01 5.19 86.38 0.45 6.46 16 21 N -0.74 -35.67 5.38 -343.45 -1.85 -37.51 16 22 C -0.24 -13.00 9.99 84.03 0.84 -12.16 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 25 N -0.96 -54.80 13.06 21.65 0.28 -54.51 16 26 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 27 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 30 C 0.12 3.49 4.18 86.31 0.36 3.86 16 31 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 32 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 37 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 38 H 0.16 4.25 7.40 -2.91 -0.02 4.23 16 39 H 0.09 1.81 6.69 -2.39 -0.02 1.79 16 40 H 0.08 2.10 7.03 -2.39 -0.02 2.09 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.12 4.98 -2.39 -0.01 1.10 16 44 H 0.06 1.17 6.57 -2.38 -0.02 1.16 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.04 1.32 6.73 -2.39 -0.02 1.30 16 48 H 0.37 19.34 6.90 -92.71 -0.64 18.70 16 49 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.08 2.68 3.95 -2.39 -0.01 2.68 16 51 H 0.09 2.42 6.70 -2.39 -0.02 2.40 16 Total: -1.00 -70.53 399.27 1.85 -68.69 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.31 Total: 38.85 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 7.05 Total: 16.06 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -6.72 Total: -134.44 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.82 Total: -35.45 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.53 1.85 -68.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133153943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.124 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds