Wall clock time and date at job start Sat Apr 11 2020 08:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30181 * 126.79880 * 2 1 4 4 O 1.20929 * 111.59851 * 180.25127 * 3 2 1 5 5 C 1.34039 * 111.56797 * 359.74239 * 4 3 2 6 6 C 1.50695 * 126.77410 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44486 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00123 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47569 * 2.37824 * 8 7 5 10 10 C 1.53001 * 109.46719 * 242.37908 * 8 7 5 11 11 C 1.52997 * 109.47145 * 122.38104 * 8 7 5 12 12 C 1.50694 * 109.47031 * 184.99457 * 11 8 7 13 13 O 1.21281 * 120.00310 * 0.02562 * 12 11 8 14 14 N 1.34781 * 119.99889 * 180.02562 * 12 11 8 15 15 C 1.48435 * 120.83345 * 359.61330 * 14 12 11 16 16 C 1.53893 * 107.37595 * 132.53822 * 15 14 12 17 17 H 1.08998 * 112.09208 * 182.51670 * 16 15 14 18 18 C 1.54543 * 108.36633 * 306.85921 * 16 15 14 19 19 C 1.54285 * 104.84918 * 89.29652 * 18 16 15 20 20 C 1.54553 * 104.84772 * 0.02562 * 19 18 16 21 21 H 1.09004 * 112.17925 * 146.40702 * 20 19 18 22 22 C 1.47168 * 120.71011 * 180.02562 * 14 12 11 23 23 N 1.48307 * 104.35759 * 24.69869 * 20 19 18 24 24 C 1.36929 * 128.07932 * 139.06867 * 23 20 19 25 25 H 1.07997 * 120.00467 * 191.97705 * 24 23 20 26 26 C 1.38818 * 119.99775 * 11.97057 * 24 23 20 27 27 N 1.31615 * 119.99837 * 6.63763 * 26 24 23 28 28 Si 1.86803 * 119.99783 * 186.63333 * 26 24 23 29 29 H 1.48496 * 109.46759 * 94.98385 * 28 26 24 30 30 H 1.48501 * 109.46813 * 214.98232 * 28 26 24 31 31 H 1.48500 * 109.47245 * 334.98101 * 28 26 24 32 32 H 1.09002 * 109.47302 * 273.68393 * 1 2 3 33 33 H 1.09001 * 109.46759 * 33.67643 * 1 2 3 34 34 H 1.08997 * 109.46954 * 153.67528 * 1 2 3 35 35 H 1.09001 * 109.47504 * 270.00142 * 6 5 4 36 36 H 1.08997 * 109.47394 * 30.00672 * 6 5 4 37 37 H 1.09000 * 109.47060 * 150.00242 * 6 5 4 38 38 H 1.09000 * 109.47396 * 51.76161 * 10 8 7 39 39 H 1.09008 * 109.47125 * 171.76256 * 10 8 7 40 40 H 1.08994 * 109.47366 * 291.76074 * 10 8 7 41 41 H 1.09001 * 109.47118 * 64.99484 * 11 8 7 42 42 H 1.08997 * 109.47040 * 305.00078 * 11 8 7 43 43 H 1.08999 * 109.56889 * 13.39903 * 15 14 12 44 44 H 1.08995 * 110.57526 * 252.24939 * 15 14 12 45 45 H 1.09003 * 110.36502 * 208.13723 * 18 16 15 46 46 H 1.08997 * 110.36925 * 330.45861 * 18 16 15 47 47 H 1.08996 * 110.36808 * 241.15785 * 19 18 16 48 48 H 1.09009 * 110.45604 * 118.88692 * 19 18 16 49 49 H 1.09002 * 109.75116 * 107.60850 * 22 14 12 50 50 H 1.08994 * 109.74895 * 346.87190 * 22 14 12 51 51 H 0.97006 * 119.99720 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0033 6 6 4.9021 -1.3695 -0.0087 7 6 2.3539 -1.1320 0.0028 8 6 1.9591 -2.5863 0.0064 9 1 2.8549 -3.2060 0.0458 10 6 1.1744 -2.9048 -1.2679 11 6 1.0853 -2.8746 1.2288 12 6 0.7921 -4.3510 1.2997 13 8 1.2384 -5.0992 0.4559 14 7 0.0338 -4.8402 2.3008 15 6 -0.5148 -3.9426 3.3481 16 6 -2.0050 -4.2884 3.5154 17 1 -2.4973 -3.6404 4.2404 18 6 -2.6782 -4.2265 2.1257 19 6 -2.5237 -5.6487 1.5478 20 6 -1.7717 -6.4409 2.6411 21 1 -2.0805 -7.4856 2.6782 22 6 -0.2620 -6.2793 2.3855 23 7 -2.0839 -5.7193 3.8986 24 6 -2.3765 -6.2499 5.1265 25 1 -2.7720 -5.6177 5.9077 26 6 -2.1650 -7.6006 5.3672 27 7 -1.5632 -8.3438 4.4629 28 14 -2.7343 -8.3632 6.9746 29 1 -4.0768 -8.9695 6.7866 30 1 -1.7711 -9.4132 7.3928 31 1 -2.8077 -7.3132 8.0221 32 1 -0.3634 0.0660 1.0255 33 1 -0.3633 0.8552 -0.5699 34 1 -0.3633 -0.9211 -0.4557 35 1 5.2103 -1.5552 -1.0376 36 1 5.6686 -0.7850 0.5003 37 1 4.7677 -2.3201 0.5075 38 1 1.7380 -2.5640 -2.1364 39 1 1.0154 -3.9810 -1.3373 40 1 0.2108 -2.3964 -1.2379 41 1 0.1496 -2.3219 1.1450 42 1 1.6107 -2.5646 2.1321 43 1 -0.4109 -2.9050 3.0307 44 1 0.0066 -4.0933 4.2933 45 1 -3.7330 -3.9705 2.2262 46 1 -2.1700 -3.5016 1.4899 47 1 -1.9395 -5.6230 0.6279 48 1 -3.5018 -6.0931 1.3628 49 1 0.3004 -6.7232 3.2071 50 1 0.0073 -6.7664 1.4484 51 1 -1.4150 -9.2876 4.6312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029364983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:07 Heat of formation + Delta-G solvation = 35.977600 kcal Electronic energy + Delta-G solvation = -32494.110543 eV Core-core repulsion = 28396.823868 eV Total energy + Delta-G solvation = -4097.286674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.87065 -41.52900 -39.60820 -37.41786 -35.34937 -34.70465 -34.10424 -33.42711 -32.18462 -31.04752 -29.66313 -29.24381 -28.42392 -27.42087 -25.50384 -25.39927 -24.50862 -21.95102 -21.21733 -21.07546 -20.97444 -19.96847 -18.66193 -18.53787 -17.85811 -17.48571 -17.10091 -16.57947 -16.46142 -15.87781 -15.54828 -15.27457 -15.09345 -14.64225 -14.45995 -14.39139 -14.23520 -14.19764 -13.95393 -13.79332 -13.60939 -13.50679 -13.46430 -13.28668 -13.17530 -13.08787 -12.82865 -12.71116 -12.57425 -12.35676 -12.22376 -12.17086 -11.94445 -11.78797 -11.46472 -11.42202 -11.35596 -11.09285 -10.80470 -10.75281 -10.50148 -10.02717 -9.64669 -8.69325 -7.80220 -5.17499 0.53380 1.25737 1.49380 1.50580 1.58377 1.79215 2.14555 2.26665 2.52395 3.24899 3.37341 3.52285 3.57390 3.62594 3.75608 4.05823 4.10597 4.13702 4.20066 4.28088 4.30060 4.36631 4.40660 4.44034 4.47725 4.62859 4.68514 4.69299 4.71161 4.75127 4.78198 4.84767 4.89269 4.90737 4.94975 5.03190 5.07915 5.11389 5.13756 5.17167 5.21401 5.23835 5.34939 5.36954 5.44652 5.53859 5.57250 5.62446 5.90599 6.28445 6.69846 7.09539 7.34677 7.35345 7.76624 8.53730 9.28751 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.002740 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.617398 B =10215.279967 C =10376.707602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.027 3.973 3 N -0.399 5.399 4 O 0.080 5.920 5 C -0.026 4.026 6 C -0.076 4.076 7 C -0.202 4.202 8 C 0.015 3.985 9 H 0.083 0.917 10 C -0.145 4.145 11 C -0.123 4.123 12 C 0.508 3.492 13 O -0.584 6.584 14 N -0.597 5.597 15 C 0.100 3.900 16 C 0.126 3.874 17 H 0.092 0.908 18 C -0.109 4.109 19 C -0.127 4.127 20 C 0.159 3.841 21 H 0.086 0.914 22 C 0.131 3.869 23 N -0.607 5.607 24 C -0.226 4.226 25 H 0.083 0.917 26 C -0.060 4.060 27 N -0.941 5.941 28 Si 0.970 3.030 29 H -0.293 1.293 30 H -0.302 1.302 31 H -0.269 1.269 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.030 0.970 50 H 0.058 0.942 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 16.639 -9.415 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 N -0.109 5.109 4 O 0.019 5.981 5 C -0.090 4.090 6 C -0.133 4.133 7 C -0.206 4.206 8 C -0.004 4.004 9 H 0.101 0.899 10 C -0.202 4.202 11 C -0.163 4.163 12 C 0.298 3.702 13 O -0.466 6.466 14 N -0.329 5.329 15 C -0.023 4.023 16 C 0.019 3.981 17 H 0.110 0.890 18 C -0.148 4.148 19 C -0.167 4.167 20 C 0.051 3.949 21 H 0.104 0.896 22 C 0.006 3.994 23 N -0.329 5.329 24 C -0.354 4.354 25 H 0.101 0.899 26 C -0.254 4.254 27 N -0.589 5.589 28 Si 0.800 3.200 29 H -0.220 1.220 30 H -0.229 1.229 31 H -0.193 1.193 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.076 0.924 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.803 17.377 -9.656 21.011 hybrid contribution -0.192 -1.906 1.041 2.180 sum 6.612 15.471 -8.615 18.902 Atomic orbital electron populations 1.20484 0.84545 1.04634 1.04653 1.23826 0.99961 0.88116 1.01273 1.73826 0.89789 1.24971 1.22268 1.84761 1.21506 1.23332 1.68507 1.24833 0.99406 0.83277 1.01440 1.20539 0.88890 0.98590 1.05314 1.20968 0.91869 0.96993 1.10760 1.19024 0.99010 0.87766 0.94633 0.89869 1.21905 0.99950 1.02393 0.95938 1.21767 1.02934 0.91079 1.00510 1.21077 0.77284 0.91617 0.80197 1.90611 1.53665 1.61523 1.40789 1.48546 1.49895 1.08339 1.26070 1.22769 0.95770 0.93708 0.90103 1.22253 0.93360 0.86681 0.95838 0.88996 1.22404 1.00558 0.95960 0.95893 1.22509 0.99293 0.97174 0.97689 1.21913 0.90605 0.97764 0.84580 0.89646 1.21856 0.98538 0.80308 0.98710 1.45386 1.80808 1.01069 1.05594 1.19357 1.34072 0.92829 0.89188 0.89901 1.25494 1.01295 0.97684 1.00921 1.69988 1.47408 1.05942 1.35575 0.85179 0.76756 0.77980 0.80084 1.22020 1.22886 1.19349 0.88581 0.90137 0.88735 0.87995 0.88298 0.88510 0.92555 0.92063 0.91710 0.86761 0.88004 0.86861 0.93035 0.91470 0.90025 0.92534 0.93287 0.95130 0.92395 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.22 71.24 0.66 -0.61 16 2 C 0.03 0.55 7.20 43.58 0.31 0.87 16 3 N -0.40 -9.64 12.07 -49.55 -0.60 -10.24 16 4 O 0.08 1.79 11.20 71.63 0.80 2.59 16 5 C -0.03 -0.48 7.49 25.04 0.19 -0.29 16 6 C -0.08 -0.84 10.18 71.23 0.73 -0.12 16 7 C -0.20 -3.95 4.92 -19.74 -0.10 -4.05 16 8 C 0.02 0.31 2.32 -11.54 -0.03 0.28 16 9 H 0.08 1.82 6.92 -2.39 -0.02 1.80 16 10 C -0.14 -3.05 8.70 71.98 0.63 -2.42 16 11 C -0.12 -2.58 3.39 29.85 0.10 -2.48 16 12 C 0.51 15.60 7.46 87.65 0.65 16.25 16 13 O -0.58 -21.70 13.46 -3.03 -0.04 -21.74 16 14 N -0.60 -20.36 2.26 -811.51 -1.83 -22.20 16 15 C 0.10 2.97 5.91 86.31 0.51 3.48 16 16 C 0.13 4.22 4.27 45.46 0.19 4.42 16 17 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.11 -3.21 6.19 31.55 0.20 -3.02 16 19 C -0.13 -4.62 6.18 31.56 0.20 -4.42 16 20 C 0.16 7.15 3.19 45.50 0.14 7.29 16 21 H 0.09 4.59 6.04 -2.39 -0.01 4.58 16 22 C 0.13 5.68 5.90 86.58 0.51 6.19 16 23 N -0.61 -27.61 2.81 -636.46 -1.79 -29.40 16 24 C -0.23 -11.52 10.39 84.04 0.87 -10.64 16 25 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 26 C -0.06 -3.22 5.45 84.86 0.46 -2.76 16 27 N -0.94 -53.22 10.55 21.65 0.23 -52.99 16 28 Si 0.97 43.86 29.56 68.60 2.03 45.88 16 29 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 30 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 31 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.22 5.21 -2.39 -0.01 1.20 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.04 7.36 -2.39 -0.02 1.03 16 38 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 39 H 0.06 1.62 6.15 -2.38 -0.01 1.61 16 40 H 0.06 1.18 5.79 -2.39 -0.01 1.16 16 41 H 0.11 1.91 5.98 -2.39 -0.01 1.89 16 42 H 0.10 1.93 8.06 -2.39 -0.02 1.92 16 43 H 0.11 2.29 6.13 -2.39 -0.01 2.27 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 47 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 48 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 2.59 7.11 -2.39 -0.02 2.58 16 51 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -67.24 389.59 5.96 -61.28 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.94 Total: 18.84 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.23 Total: 7.97 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.99 Total: -114.83 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.76 Total: -19.15 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.24 5.96 -61.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.258 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds