Wall clock time and date at job start Sat Apr 11 2020 08:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 120.00134 * 2 1 4 4 C 1.39705 * 119.99952 * 179.97438 * 2 1 3 5 5 C 1.39021 * 120.00365 * 186.44684 * 4 2 1 6 6 C 1.38208 * 120.21652 * 180.25871 * 5 4 2 7 7 C 1.38024 * 120.23155 * 359.48839 * 6 5 4 8 8 C 1.39581 * 120.00137 * 0.25657 * 7 6 5 9 9 C 1.47856 * 120.11050 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00218 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99759 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99726 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47108 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.51003 * 304.99881 * 13 12 11 15 15 C 1.53293 * 109.51287 * 184.89565 * 13 12 11 16 16 N 1.47153 * 108.38211 * 187.77060 * 15 13 12 17 17 C 1.36937 * 120.98232 * 230.51096 * 16 15 13 18 18 H 1.08001 * 119.99681 * 146.21251 * 17 16 15 19 19 C 1.38807 * 120.00183 * 326.21667 * 17 16 15 20 20 N 1.31623 * 119.99916 * 348.65837 * 19 17 16 21 21 Si 1.86801 * 120.00189 * 168.65350 * 19 17 16 22 22 H 1.48506 * 109.46658 * 90.00043 * 21 19 17 23 23 H 1.48492 * 109.47745 * 210.00371 * 21 19 17 24 24 H 1.48499 * 109.47208 * 330.00752 * 21 19 17 25 25 C 1.47154 * 118.03408 * 50.53973 * 16 15 13 26 26 C 1.53294 * 108.38639 * 309.45739 * 25 16 15 27 27 O 1.42963 * 109.26252 * 52.27955 * 26 25 16 28 28 C 1.38640 * 120.00236 * 6.19701 * 4 2 1 29 29 H 1.08996 * 109.47201 * 174.18816 * 1 2 3 30 30 H 1.09003 * 109.47203 * 294.19467 * 1 2 3 31 31 H 1.09000 * 109.46844 * 54.18936 * 1 2 3 32 32 H 1.09005 * 109.47002 * 270.00263 * 3 2 1 33 33 H 1.09002 * 109.47184 * 29.99680 * 3 2 1 34 34 H 1.08991 * 109.47119 * 150.00024 * 3 2 1 35 35 H 1.07995 * 119.89511 * 0.02562 * 5 4 2 36 36 H 1.07996 * 119.88592 * 179.77273 * 6 5 4 37 37 H 1.07998 * 120.00053 * 180.23754 * 7 6 5 38 38 H 0.97000 * 120.00060 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.47192 * 299.99595 * 12 11 9 40 40 H 1.08996 * 109.47399 * 59.99892 * 12 11 9 41 41 H 1.09003 * 109.47365 * 59.99685 * 14 13 12 42 42 H 1.09002 * 109.47203 * 180.02562 * 14 13 12 43 43 H 1.09006 * 109.46839 * 299.99981 * 14 13 12 44 44 H 1.08997 * 109.68197 * 307.49585 * 15 13 12 45 45 H 1.09000 * 109.68112 * 68.01854 * 15 13 12 46 46 H 0.97003 * 119.99337 * 179.97438 * 20 19 17 47 47 H 1.08992 * 109.68559 * 69.18718 * 25 16 15 48 48 H 1.09009 * 109.67909 * 189.74092 * 25 16 15 49 49 H 1.08994 * 109.51445 * 172.22642 * 26 25 16 50 50 H 1.09005 * 109.51605 * 292.33535 * 26 25 16 51 51 H 1.08001 * 120.11328 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 3.5472 -1.2137 0.1357 6 6 4.2431 -2.4078 0.1315 7 6 3.5684 -3.6050 0.0036 8 6 2.1787 -3.6124 -0.1274 9 6 1.4534 -4.8936 -0.2640 10 8 0.2433 -4.8977 -0.3784 11 7 2.1341 -6.0568 -0.2626 12 6 1.4155 -7.3262 -0.3985 13 6 2.4150 -8.4841 -0.3662 14 6 3.4811 -8.2690 -1.4424 15 6 1.6795 -9.8029 -0.6304 16 7 2.6214 -10.9118 -0.4096 17 6 2.7835 -11.8963 -1.3475 18 1 3.7511 -12.3555 -1.4866 19 6 1.7043 -12.3040 -2.1195 20 7 0.4867 -11.9140 -1.8067 21 14 1.9800 -13.4062 -3.6022 22 1 1.8994 -14.8287 -3.1833 23 1 0.9381 -13.1314 -4.6240 24 1 3.3217 -13.1351 -4.1780 25 6 3.3833 -10.9318 0.8491 26 6 4.0359 -9.5581 1.0412 27 8 3.0386 -8.5410 0.9190 28 6 1.4765 -2.4071 -0.1285 29 1 -0.3633 -1.0223 -0.1041 30 1 -0.3634 0.4212 0.9374 31 1 -0.3633 0.6013 -0.8334 32 1 2.3792 1.5834 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1499 1.1384 0.5138 35 1 4.0803 -0.2804 0.2406 36 1 5.3183 -2.4043 0.2332 37 1 4.1156 -4.5361 0.0046 38 1 3.0999 -6.0535 -0.1724 39 1 0.7089 -7.4337 0.4246 40 1 0.8752 -7.3384 -1.3451 41 1 4.0048 -7.3320 -1.2529 42 1 4.1926 -9.0945 -1.4192 43 1 3.0051 -8.2275 -2.4222 44 1 0.8359 -9.8961 0.0534 45 1 1.3218 -9.8240 -1.6598 46 1 -0.2673 -12.1986 -2.3464 47 1 2.7113 -11.1387 1.6819 48 1 4.1544 -11.7007 0.7993 49 1 4.4897 -9.5058 2.0308 50 1 4.8025 -9.4095 0.2807 51 1 0.4012 -2.4066 -0.2292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108364050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:07 Heat of formation + Delta-G solvation = -28.473928 kcal Electronic energy + Delta-G solvation = -30936.805493 eV Core-core repulsion = 26836.723991 eV Total energy + Delta-G solvation = -4100.081502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44928 -40.61766 -39.71177 -37.00467 -36.55082 -35.95184 -33.34705 -33.21467 -32.19593 -30.97906 -29.57511 -29.17808 -28.06449 -27.28997 -25.71911 -25.00306 -24.28888 -22.76631 -22.34822 -21.12231 -20.30864 -19.27669 -18.84491 -17.55228 -17.40576 -17.11833 -16.79124 -16.48257 -16.29939 -16.16506 -16.04880 -15.85217 -15.58034 -15.32326 -15.18649 -14.85561 -14.66769 -14.53995 -14.38218 -14.04366 -13.54255 -13.39709 -13.31008 -13.19336 -13.15290 -12.91855 -12.86217 -12.77327 -12.57386 -12.45852 -12.43683 -12.16697 -11.96805 -11.91855 -11.87975 -11.18817 -11.01444 -10.85138 -10.70294 -10.52174 -10.23181 -9.87000 -8.61490 -8.24485 -7.89595 -5.45180 -0.08063 0.59281 1.45792 1.47096 1.56452 1.88822 2.01517 2.28631 2.47714 2.79159 2.97562 3.26287 3.50624 3.66186 3.89130 3.93432 4.01482 4.05126 4.10689 4.27793 4.34516 4.43057 4.43765 4.47701 4.51171 4.55072 4.55870 4.62354 4.69974 4.73330 4.78841 4.80417 4.86087 4.93423 4.96932 5.02853 5.04778 5.13324 5.20690 5.23532 5.31833 5.35518 5.44542 5.52590 5.54111 5.62407 5.80366 6.30306 6.33782 6.38432 6.48682 6.51821 7.08553 7.15202 7.74953 8.33505 9.15604 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002185 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.967936 B =12811.777534 C =13364.166303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.645 5.645 3 C 0.089 3.911 4 C 0.198 3.802 5 C -0.172 4.172 6 C -0.072 4.072 7 C -0.146 4.146 8 C -0.101 4.101 9 C 0.550 3.450 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.148 3.852 13 C 0.094 3.906 14 C -0.154 4.154 15 C 0.172 3.828 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.071 0.929 19 C -0.046 4.046 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.102 3.898 26 C 0.052 3.948 27 O -0.386 6.386 28 C -0.163 4.163 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.414 0.586 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.056 0.944 44 H -0.007 1.007 45 H 0.058 0.942 46 H 0.251 0.749 47 H 0.010 0.990 48 H 0.072 0.928 49 H 0.117 0.883 50 H 0.063 0.937 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.558 26.268 4.367 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C -0.053 4.053 4 C 0.096 3.904 5 C -0.194 4.194 6 C -0.090 4.090 7 C -0.167 4.167 8 C -0.105 4.105 9 C 0.339 3.661 10 O -0.468 6.468 11 N -0.350 5.350 12 C 0.023 3.977 13 C 0.053 3.947 14 C -0.211 4.211 15 C 0.045 3.955 16 N -0.329 5.329 17 C -0.393 4.393 18 H 0.088 0.912 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.189 1.189 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.305 6.305 28 C -0.186 4.186 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.011 0.989 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.091 0.909 49 H 0.135 0.865 50 H 0.081 0.919 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.428 26.488 4.358 28.452 hybrid contribution -0.552 -1.462 -0.876 1.791 sum 8.876 25.027 3.481 26.781 Atomic orbital electron populations 1.21800 0.79149 1.02899 1.02127 1.46532 1.05571 1.03279 1.80344 1.21808 0.97720 0.83836 1.01928 1.17855 0.92135 0.85681 0.94733 1.21228 0.91564 1.00294 1.06360 1.21214 1.01315 0.90573 0.95935 1.21302 0.91800 1.00107 1.03475 1.19571 0.94748 0.91400 1.04795 1.18832 0.86735 0.84817 0.75712 1.90727 1.15793 1.88243 1.52025 1.45742 1.11662 1.04597 1.73031 1.21067 0.93759 0.81269 1.01577 1.22176 0.93429 0.94404 0.84688 1.22120 0.98915 1.02208 0.97848 1.20952 0.90106 0.85092 0.99301 1.44141 1.47901 1.24496 1.16384 1.19426 0.93622 1.13516 1.12685 0.91153 1.26032 0.94791 1.00078 1.03280 1.70155 0.98422 1.49228 1.40232 0.85275 0.77519 0.78598 0.79042 1.21159 1.22169 1.18922 1.21831 0.95119 0.97561 0.87831 1.23121 0.89849 0.86728 1.02789 1.87842 1.55360 1.55129 1.32169 1.20786 1.00151 0.90722 1.06984 0.91706 0.91748 0.91264 0.92843 0.90076 0.90136 0.82884 0.82083 0.84417 0.74696 0.92575 0.90900 0.90404 0.91717 0.92490 0.98868 0.92369 0.94042 0.97205 0.90933 0.86487 0.91921 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.62 127.77 1.36 2.55 16 2 N -0.65 -10.16 3.41 -747.40 -2.55 -12.71 16 3 C 0.09 0.77 10.37 127.77 1.32 2.10 16 4 C 0.20 3.93 6.53 38.17 0.25 4.18 16 5 C -0.17 -2.61 9.26 22.45 0.21 -2.40 16 6 C -0.07 -1.06 10.02 22.21 0.22 -0.83 16 7 C -0.15 -2.85 9.54 22.54 0.22 -2.64 16 8 C -0.10 -2.69 5.87 -20.10 -0.12 -2.80 16 9 C 0.55 18.14 7.77 86.79 0.67 18.82 16 10 O -0.59 -24.02 16.35 -3.88 -0.06 -24.09 16 11 N -0.70 -21.09 5.14 -465.95 -2.40 -23.49 16 12 C 0.15 5.38 4.85 86.38 0.42 5.80 16 13 C 0.09 3.52 0.78 -10.69 -0.01 3.52 16 14 C -0.15 -4.99 7.86 71.98 0.57 -4.42 16 15 C 0.17 8.38 4.03 86.35 0.35 8.73 16 16 N -0.60 -29.87 2.53 -697.55 -1.77 -31.64 16 17 C -0.26 -14.03 9.59 84.03 0.81 -13.23 16 18 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 19 C -0.05 -2.53 5.03 84.86 0.43 -2.10 16 20 N -0.94 -55.69 11.38 21.65 0.25 -55.44 16 21 Si 0.97 44.30 29.57 68.60 2.03 46.33 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.10 4.13 6.74 86.35 0.58 4.72 16 26 C 0.05 1.67 6.60 72.08 0.48 2.15 16 27 O -0.39 -13.74 10.18 -148.98 -1.52 -15.26 16 28 C -0.16 -4.17 8.86 22.67 0.20 -3.97 16 29 H 0.06 1.16 5.31 -2.39 -0.01 1.15 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 34 H 0.08 0.50 5.96 -2.39 -0.01 0.49 16 35 H 0.15 1.40 6.00 -2.91 -0.02 1.39 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.14 2.18 6.40 -2.91 -0.02 2.17 16 38 H 0.41 10.22 5.02 -92.71 -0.47 9.76 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.08 1.96 6.58 -2.39 -0.02 1.94 16 42 H 0.06 2.26 6.12 -2.39 -0.01 2.24 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.06 3.15 6.56 -2.39 -0.02 3.13 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 49 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 50 H 0.06 1.86 6.26 -2.38 -0.01 1.84 16 51 H 0.12 3.38 5.33 -2.91 -0.02 3.36 16 Total: -1.00 -73.49 397.26 2.42 -71.07 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.49 Total: 25.08 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 7.95 Total: 20.15 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.47 Total: -123.28 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.58 Total: -39.35 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.49 2.42 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108364050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.594 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds