Wall clock time and date at job start Sat Apr 11 2020 08:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99620 * 2 1 4 4 C 1.38875 * 110.99962 * 123.95116 * 2 1 3 5 5 C 1.38960 * 120.17824 * 300.02638 * 4 2 1 6 6 C 1.37958 * 120.06770 * 179.97438 * 5 4 2 7 7 C 1.38614 * 120.42043 * 359.97438 * 6 5 4 8 8 C 1.37754 * 120.34878 * 359.72027 * 7 6 5 9 9 C 1.39731 * 119.92967 * 0.55917 * 8 7 6 10 10 C 1.47437 * 120.20934 * 179.71716 * 9 8 7 11 11 O 1.21600 * 119.99847 * 179.72524 * 10 9 8 12 12 N 1.34772 * 119.99610 * 359.72825 * 10 9 8 13 13 C 1.46502 * 119.99716 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47269 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.55047 * 60.12739 * 14 13 12 16 16 C 1.53290 * 109.51494 * 180.25274 * 14 13 12 17 17 N 1.47232 * 108.40798 * 172.23175 * 16 14 13 18 18 C 1.36930 * 121.03328 * 129.46021 * 17 16 14 19 19 H 1.08002 * 120.00530 * 206.18598 * 18 17 16 20 20 C 1.38816 * 119.99608 * 26.18827 * 18 17 16 21 21 N 1.31615 * 120.00526 * 16.88476 * 20 18 17 22 22 Si 1.86806 * 119.99896 * 196.88547 * 20 18 17 23 23 H 1.48493 * 109.47161 * 89.99376 * 22 20 18 24 24 H 1.48497 * 109.47448 * 210.00216 * 22 20 18 25 25 H 1.48503 * 109.46954 * 330.00010 * 22 20 18 26 26 C 1.47154 * 117.98230 * 309.48797 * 17 16 14 27 27 C 1.53298 * 108.41825 * 50.51870 * 26 17 16 28 28 O 1.42959 * 109.51371 * 300.00367 * 14 13 12 29 29 H 1.09004 * 109.47234 * 296.04368 * 1 2 3 30 30 H 1.08998 * 109.47103 * 56.05004 * 1 2 3 31 31 H 1.09004 * 109.46932 * 176.05219 * 1 2 3 32 32 H 1.09000 * 109.46851 * 183.94883 * 3 2 1 33 33 H 1.08996 * 109.46912 * 303.95139 * 3 2 1 34 34 H 1.08999 * 109.47317 * 63.95533 * 3 2 1 35 35 H 1.07999 * 119.96496 * 359.97438 * 5 4 2 36 36 H 1.07995 * 119.79042 * 179.97438 * 6 5 4 37 37 H 1.07994 * 119.82122 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.03048 * 180.29799 * 8 7 6 39 39 H 0.97000 * 120.00195 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.46877 * 59.99845 * 13 12 10 41 41 H 1.08999 * 109.47195 * 299.99813 * 13 12 10 42 42 H 1.09000 * 109.47604 * 299.87595 * 15 14 13 43 43 H 1.09004 * 109.47201 * 59.87360 * 15 14 13 44 44 H 1.09000 * 109.47333 * 179.87598 * 15 14 13 45 45 H 1.09001 * 109.68414 * 291.94993 * 16 14 13 46 46 H 1.09001 * 109.68139 * 52.50357 * 16 14 13 47 47 H 0.97002 * 120.00383 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.68310 * 290.77188 * 26 17 16 49 49 H 1.09005 * 109.67869 * 170.25970 * 26 17 16 50 50 H 1.09001 * 109.51044 * 67.59999 * 27 26 17 51 51 H 1.09000 * 109.51036 * 187.70217 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9667 -0.7241 1.0755 5 6 1.6558 -0.3459 2.3760 6 6 2.1510 -1.0671 3.4427 7 6 2.9599 -2.1721 3.2278 8 6 3.2739 -2.5660 1.9456 9 6 2.7851 -1.8427 0.8546 10 6 3.1223 -2.2551 -0.5201 11 8 2.6908 -1.6258 -1.4668 12 7 3.9089 -3.3297 -0.7273 13 6 4.2436 -3.7400 -2.0933 14 6 5.1424 -4.9773 -2.0485 15 6 4.4076 -6.1187 -1.3427 16 6 5.4984 -5.4036 -3.4773 17 7 6.5078 -6.4730 -3.4055 18 6 6.3448 -7.6450 -4.0947 19 1 6.8160 -8.5499 -3.7403 20 6 5.5740 -7.6699 -5.2489 21 7 5.2774 -6.5463 -5.8666 22 14 4.9577 -9.2985 -5.9254 23 1 3.6332 -9.6117 -5.3315 24 1 4.8286 -9.2042 -7.4017 25 1 5.9215 -10.3743 -5.5805 26 6 7.6974 -6.2447 -2.5699 27 6 7.2343 -5.7774 -1.1853 28 8 6.3431 -4.6697 -1.3361 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.0259 0.5136 2.5519 36 1 1.9070 -0.7690 4.4515 37 1 3.3419 -2.7299 4.0699 38 1 3.9006 -3.4306 1.7840 39 1 4.2534 -3.8315 0.0279 40 1 4.7678 -2.9285 -2.5982 41 1 3.3283 -3.9748 -2.6367 42 1 4.1587 -5.8165 -0.3255 43 1 3.4922 -6.3526 -1.8864 44 1 5.0482 -7.0001 -1.3135 45 1 4.6066 -5.7743 -3.9828 46 1 5.9039 -4.5524 -4.0241 47 1 4.7384 -6.5637 -6.6730 48 1 8.3243 -5.4781 -3.0254 49 1 8.2624 -7.1720 -2.4745 50 1 6.7184 -6.5935 -0.6794 51 1 8.0990 -5.4724 -0.5960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108438002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:16 Heat of formation + Delta-G solvation = -19.706092 kcal Electronic energy + Delta-G solvation = -31684.802327 eV Core-core repulsion = 27585.101027 eV Total energy + Delta-G solvation = -4099.701300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52570 -40.70689 -39.45091 -37.51910 -36.47173 -35.81334 -33.42185 -33.19501 -31.92944 -30.85290 -29.56731 -28.52489 -28.07085 -27.37412 -25.48435 -24.99294 -24.52722 -22.95255 -21.88387 -21.37426 -20.32079 -19.10928 -18.79924 -17.53338 -17.40058 -17.03065 -16.83860 -16.26565 -16.19369 -16.06258 -15.85483 -15.61635 -15.51965 -15.36025 -15.20696 -14.99005 -14.63633 -14.49580 -14.07742 -13.97474 -13.54699 -13.36642 -13.24528 -13.17552 -12.97761 -12.92447 -12.78826 -12.74768 -12.66912 -12.51412 -12.44206 -12.16609 -12.11807 -11.94933 -11.82544 -11.14172 -10.87590 -10.71980 -10.49239 -10.10393 -9.88902 -9.66734 -9.21260 -8.71603 -7.88714 -5.35769 -0.10223 0.31164 1.46473 1.47854 1.56529 2.01176 2.19158 2.49160 2.79864 2.89018 2.90914 3.25767 3.51395 3.78717 3.87649 3.96707 4.03857 4.11377 4.13492 4.17289 4.33974 4.34944 4.43866 4.45558 4.47661 4.57469 4.59194 4.61111 4.65976 4.69127 4.72288 4.80553 4.88786 4.93437 4.94322 4.97980 5.05952 5.13503 5.21642 5.29544 5.35954 5.40212 5.45770 5.47768 5.54275 5.62275 5.81228 6.00026 6.29931 6.38480 6.44024 6.68701 7.07289 7.38893 7.76815 8.31189 9.16916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.002620 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.291786 B =10685.218757 C =11444.261996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.525 5.525 3 C 0.039 3.961 4 C 0.130 3.870 5 C -0.164 4.164 6 C -0.078 4.078 7 C -0.126 4.126 8 C -0.083 4.083 9 C -0.142 4.142 10 C 0.545 3.455 11 O -0.546 6.546 12 N -0.708 5.708 13 C 0.155 3.845 14 C 0.095 3.905 15 C -0.152 4.152 16 C 0.169 3.831 17 N -0.607 5.607 18 C -0.258 4.258 19 H 0.075 0.925 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.101 3.899 27 C 0.052 3.948 28 O -0.385 6.385 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.409 0.591 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.066 0.934 46 H -0.009 1.009 47 H 0.250 0.750 48 H 0.011 0.989 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 10.781 23.737 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.246 5.246 3 C -0.107 4.107 4 C 0.034 3.966 5 C -0.184 4.184 6 C -0.097 4.097 7 C -0.144 4.144 8 C -0.102 4.102 9 C -0.146 4.146 10 C 0.333 3.667 11 O -0.423 6.423 12 N -0.363 5.363 13 C 0.030 3.970 14 C 0.054 3.946 15 C -0.209 4.209 16 C 0.042 3.958 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.093 0.907 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.190 1.190 26 C -0.024 4.024 27 C -0.025 4.025 28 O -0.305 6.305 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.159 0.841 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.247 0.753 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.009 0.991 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.028 11.190 22.492 26.086 hybrid contribution -0.265 -0.763 -0.678 1.055 sum -7.293 10.426 21.814 25.254 Atomic orbital electron populations 1.22376 0.84845 1.02025 1.01643 1.59119 1.09121 1.14740 1.41571 1.22345 1.00072 0.86676 1.01593 1.18960 0.94642 0.93094 0.89905 1.21857 1.02531 1.01971 0.92081 1.21615 0.94427 0.93717 0.99918 1.21493 0.98473 0.97616 0.96834 1.21561 0.97752 0.98677 0.92212 1.20027 1.03294 0.98739 0.92501 1.18566 0.78453 0.80034 0.89654 1.90805 1.53161 1.54022 1.44333 1.45754 1.51329 1.30597 1.08580 1.20947 0.97086 0.94905 0.84103 1.22165 0.85045 0.93752 0.93610 1.22100 1.00205 0.98335 1.00281 1.21047 0.93682 0.89437 0.91649 1.44271 1.18651 1.15995 1.54195 1.19519 1.29066 0.87177 1.03030 0.90747 1.25807 1.02782 0.99743 0.96302 1.70188 1.41778 1.27190 1.19113 0.85269 0.78638 0.79990 0.76588 1.21067 1.22570 1.19046 1.21826 0.89376 0.99131 0.92061 1.23121 0.93561 0.89621 0.96203 1.87829 1.30504 1.36330 1.75810 0.93399 0.90484 0.92768 0.92992 0.90469 0.93449 0.84110 0.82330 0.82168 0.84022 0.75318 0.93164 0.91351 0.90484 0.92800 0.91801 0.91574 0.99129 0.94108 0.97087 0.90885 0.91975 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.34 127.69 1.19 1.95 16 2 N -0.52 -13.43 2.92 -744.36 -2.17 -15.60 16 3 C 0.04 0.82 9.38 127.69 1.20 2.02 16 4 C 0.13 3.07 4.72 38.71 0.18 3.25 16 5 C -0.16 -2.67 8.55 22.38 0.19 -2.48 16 6 C -0.08 -0.94 10.03 22.29 0.22 -0.71 16 7 C -0.13 -1.61 10.02 22.24 0.22 -1.39 16 8 C -0.08 -1.52 9.53 22.52 0.21 -1.30 16 9 C -0.14 -3.65 5.89 -19.98 -0.12 -3.77 16 10 C 0.54 17.99 7.76 86.67 0.67 18.66 16 11 O -0.55 -22.27 15.03 -4.03 -0.06 -22.33 16 12 N -0.71 -21.66 5.10 -466.37 -2.38 -24.04 16 13 C 0.15 5.72 4.82 86.38 0.42 6.14 16 14 C 0.10 3.62 0.76 -10.70 -0.01 3.61 16 15 C -0.15 -5.06 7.92 71.98 0.57 -4.49 16 16 C 0.17 8.29 4.12 86.34 0.36 8.64 16 17 N -0.61 -30.10 2.57 -697.33 -1.79 -31.89 16 18 C -0.26 -13.86 9.65 84.04 0.81 -13.05 16 19 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 21 N -0.94 -55.93 11.14 21.65 0.24 -55.69 16 22 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.10 4.10 6.73 86.35 0.58 4.68 16 27 C 0.05 1.66 6.60 72.08 0.48 2.14 16 28 O -0.39 -13.75 9.97 -148.98 -1.49 -15.24 16 29 H 0.05 0.72 7.11 -2.38 -0.02 0.71 16 30 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.05 0.74 7.33 -2.39 -0.02 0.72 16 35 H 0.14 1.73 7.01 -2.91 -0.02 1.71 16 36 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 37 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.14 2.12 6.40 -2.91 -0.02 2.10 16 39 H 0.41 10.29 5.24 -92.71 -0.49 9.80 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.08 2.01 6.88 -2.39 -0.02 1.99 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.06 2.27 6.11 -2.39 -0.01 2.26 16 45 H 0.07 3.64 6.14 -2.39 -0.01 3.62 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 50 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 51 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -73.87 398.50 2.43 -71.44 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.45 Total: 25.26 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 7.60 Total: 21.51 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -6.10 Total: -127.22 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.55 Total: -37.57 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -73.87 2.43 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108438002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.734 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds