Wall clock time and date at job start Sat Apr 11 2020 08:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44417 * 2 1 4 4 N 1.34482 * 107.66865 * 179.76353 * 3 2 1 5 5 C 1.30253 * 108.69971 * 0.42473 * 4 3 2 6 6 C 1.50703 * 125.62111 * 179.84125 * 5 4 3 7 7 C 1.52995 * 109.47654 * 89.68700 * 6 5 4 8 8 C 1.52995 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46841 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00352 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99983 * 180.02562 * 11 9 8 13 13 C 1.53954 * 113.58380 * 205.00420 * 12 11 9 14 14 C 1.52905 * 86.78040 * 220.66109 * 13 12 11 15 15 C 1.52917 * 121.13340 * 150.61456 * 14 13 12 16 16 C 1.53957 * 86.77928 * 150.61497 * 15 14 13 17 17 N 1.46499 * 113.58030 * 220.66444 * 16 15 14 18 18 C 1.36934 * 119.99782 * 205.00320 * 17 16 15 19 19 H 1.07999 * 120.00173 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00317 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47337 * 89.99817 * 22 20 18 24 24 H 1.48495 * 109.47308 * 210.00239 * 22 20 18 25 25 H 1.48505 * 109.46714 * 329.99624 * 22 20 18 26 26 C 1.52909 * 121.13655 * 259.17353 * 14 13 12 27 27 C 1.52910 * 88.04631 * 24.89586 * 14 13 12 28 28 O 1.33975 * 108.76380 * 359.57122 * 5 4 3 29 29 H 1.09000 * 109.47299 * 269.97806 * 1 2 3 30 30 H 1.09002 * 109.47292 * 29.97625 * 1 2 3 31 31 H 1.09006 * 109.46953 * 149.97395 * 1 2 3 32 32 H 1.07993 * 126.16488 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46377 * 329.68966 * 6 5 4 34 34 H 1.08998 * 109.47181 * 209.69560 * 6 5 4 35 35 H 1.09003 * 109.46782 * 60.00154 * 7 6 5 36 36 H 1.09004 * 109.47186 * 300.00938 * 7 6 5 37 37 H 1.08996 * 109.47217 * 60.00628 * 8 7 6 38 38 H 1.08995 * 109.47123 * 300.00149 * 8 7 6 39 39 H 0.97003 * 120.00247 * 0.02562 * 11 9 8 40 40 H 1.09009 * 112.87577 * 336.14188 * 12 11 9 41 41 H 1.08990 * 113.66623 * 106.18266 * 13 12 11 42 42 H 1.09000 * 113.74113 * 335.14493 * 13 12 11 43 43 H 1.08997 * 113.66031 * 265.08631 * 15 14 13 44 44 H 1.09002 * 113.66187 * 36.15037 * 15 14 13 45 45 H 1.09001 * 113.57949 * 89.86751 * 16 15 14 46 46 H 0.96996 * 119.99947 * 24.99948 * 17 16 15 47 47 H 0.97005 * 120.00007 * 180.02562 * 21 20 18 48 48 H 1.09001 * 113.66026 * 323.85782 * 26 14 13 49 49 H 1.08998 * 113.66179 * 94.82069 * 26 14 13 50 50 H 1.09006 * 113.66074 * 89.56978 * 27 14 13 51 51 H 1.08994 * 113.66448 * 220.62942 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0007 6 6 4.8004 -1.5341 -0.0011 7 6 5.2151 -1.8319 1.4412 8 6 6.4580 -2.7241 1.4406 9 6 6.8659 -3.0179 2.8613 10 8 6.2254 -2.5593 3.7834 11 7 7.9421 -3.7912 3.1071 12 6 8.3384 -4.0773 4.4882 13 6 9.8322 -4.4162 4.6427 14 6 9.3963 -5.4962 5.6334 15 6 10.2147 -6.7742 5.8207 16 6 9.6902 -6.7945 7.2681 17 7 10.7041 -7.1780 8.2535 18 6 10.3240 -7.7311 9.4471 19 1 9.2768 -7.8849 9.6619 20 6 11.2847 -8.0950 10.3807 21 7 12.5609 -7.9080 10.1188 22 14 10.7663 -8.8501 12.0087 23 1 10.6990 -10.3271 11.8702 24 1 11.7570 -8.4958 13.0565 25 1 9.4305 -8.3276 12.3936 26 6 9.4982 -5.2722 7.1426 27 6 8.0400 -5.5222 4.9278 28 8 2.3074 -1.0840 -0.0004 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 1.9822 2.1112 0.0004 33 1 5.6146 -1.0231 -0.5151 34 1 4.5762 -2.4687 -0.5151 35 1 4.4008 -2.3428 1.9551 36 1 5.4393 -0.8972 1.9552 37 1 7.2720 -2.2128 0.9269 38 1 6.2341 -3.6587 0.9266 39 1 8.4542 -4.1583 2.3696 40 1 7.9867 -3.3252 5.1945 41 1 10.4176 -3.6167 5.0965 42 1 10.2883 -4.8130 3.7357 43 1 9.8639 -7.6108 5.2165 44 1 11.2912 -6.6189 5.7478 45 1 8.7559 -7.3435 7.3856 46 1 11.6446 -7.0403 8.0605 47 1 13.2323 -8.1626 10.7710 48 1 10.3732 -4.6948 7.4410 49 1 8.5755 -4.9075 7.5940 50 1 7.9909 -6.2300 4.1002 51 1 7.1937 -5.6061 5.6095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121212527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:11 Heat of formation + Delta-G solvation = -3.782492 kcal Electronic energy + Delta-G solvation = -28584.097386 eV Core-core repulsion = 24485.086585 eV Total energy + Delta-G solvation = -4099.010801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.32902 -41.65415 -40.31621 -37.30026 -36.22121 -35.60274 -35.23314 -33.67549 -33.15454 -31.46174 -30.00497 -26.89494 -26.74704 -26.57796 -26.08733 -24.46830 -23.33855 -22.78279 -21.81263 -21.47121 -21.25246 -19.41352 -18.67587 -18.25455 -17.82707 -17.55425 -17.18056 -16.93784 -16.75711 -16.06620 -15.88035 -15.58545 -15.51303 -15.19939 -15.00715 -14.65548 -14.44678 -14.17291 -13.94029 -13.80876 -13.63410 -13.30426 -13.20584 -13.16670 -13.02607 -12.97902 -12.90127 -12.82235 -12.53629 -12.36776 -12.32343 -12.30751 -12.14764 -11.84506 -11.74484 -11.55805 -11.26842 -11.04915 -10.96634 -10.81512 -10.63352 -9.94142 -9.62574 -8.97706 -7.95438 -5.23270 0.42579 1.46380 1.47820 1.56305 1.63473 1.70774 1.71619 2.30405 2.55946 3.11545 3.36148 3.51670 3.56589 3.67892 3.77189 3.83582 3.87205 3.99121 4.01808 4.03270 4.12306 4.28701 4.30483 4.33849 4.38860 4.51942 4.62149 4.63475 4.66160 4.66447 4.72032 4.81784 4.82757 4.84963 4.95020 5.01527 5.04973 5.07132 5.11073 5.11718 5.16069 5.19151 5.25583 5.30693 5.36786 5.44223 5.57236 5.68453 5.71217 6.27553 6.67748 6.72379 7.33212 7.37631 8.11267 8.34253 9.27958 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.001320 C = 0.001279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.624590 B =21214.550564 C =21891.528004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.068 4.068 4 N -0.514 5.514 5 C 0.180 3.820 6 C -0.017 4.017 7 C -0.095 4.095 8 C -0.127 4.127 9 C 0.504 3.496 10 O -0.597 6.597 11 N -0.705 5.705 12 C 0.128 3.872 13 C -0.116 4.116 14 C -0.091 4.091 15 C -0.120 4.120 16 C 0.145 3.855 17 N -0.728 5.728 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.140 4.140 27 C -0.118 4.118 28 O -0.216 6.216 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.202 0.798 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.420 0.580 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.107 0.893 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.441 14.058 -30.580 38.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 C -0.205 4.205 4 N -0.244 5.244 5 C -0.027 4.027 6 C -0.054 4.054 7 C -0.135 4.135 8 C -0.167 4.167 9 C 0.292 3.708 10 O -0.478 6.478 11 N -0.356 5.356 12 C 0.022 3.978 13 C -0.154 4.154 14 C -0.092 4.092 15 C -0.159 4.159 16 C 0.035 3.965 17 N -0.366 5.366 18 C -0.378 4.378 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.197 1.197 26 C -0.181 4.181 27 C -0.157 4.157 28 O -0.104 6.104 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.219 0.781 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.258 0.742 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.474 14.628 -29.783 38.474 hybrid contribution -0.069 -0.626 1.350 1.490 sum -19.543 14.002 -28.433 37.234 Atomic orbital electron populations 1.20489 0.81194 1.05838 1.04862 1.24257 0.96677 0.84001 1.05846 1.23537 0.87524 1.01764 1.07680 1.70414 1.24414 1.10287 1.19255 1.26938 0.85111 0.90559 1.00075 1.20309 0.88327 0.98380 0.98405 1.21190 0.97604 0.99813 0.94856 1.21672 0.99493 1.03618 0.91882 1.21491 0.79642 0.76869 0.92763 1.90720 1.54842 1.53600 1.48633 1.45913 1.29937 1.51363 1.08436 1.22251 0.95645 0.95959 0.83959 1.23140 0.94714 0.97649 0.99863 1.21910 0.97172 0.96305 0.93843 1.23088 0.99516 0.97032 0.96266 1.21934 0.92337 0.93232 0.88958 1.42590 1.04917 1.73283 1.15791 1.19706 0.92647 1.31434 0.93999 0.90872 1.25537 0.95342 1.03511 1.02298 1.69810 1.00032 1.55365 1.36825 0.85173 0.77129 0.78167 0.79517 1.21215 1.22141 1.19709 1.23404 1.00303 0.99825 0.94579 1.23167 0.95329 0.97199 0.99979 1.84400 1.18371 1.37465 1.70130 0.88884 0.86689 0.89601 0.78074 0.85629 0.85896 0.92864 0.93144 0.85180 0.84929 0.74196 0.89764 0.91274 0.86757 0.90548 0.90660 0.91353 0.79393 0.94002 0.91649 0.93124 0.87425 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 71.24 0.74 0.34 16 2 C -0.06 -0.84 7.39 24.79 0.18 -0.66 16 3 C -0.07 -1.16 11.80 83.39 0.98 -0.18 16 4 N -0.51 -11.10 11.29 -303.82 -3.43 -14.53 16 5 C 0.18 3.26 7.60 88.34 0.67 3.93 16 6 C -0.02 -0.16 5.84 29.85 0.17 0.02 16 7 C -0.10 -1.31 4.49 30.59 0.14 -1.18 16 8 C -0.13 -1.02 5.70 29.85 0.17 -0.85 16 9 C 0.50 9.28 7.83 87.66 0.69 9.96 16 10 O -0.60 -18.04 15.58 -3.03 -0.05 -18.09 16 11 N -0.70 -10.35 5.35 -439.50 -2.35 -12.70 16 12 C 0.13 2.70 4.24 45.63 0.19 2.89 16 13 C -0.12 -2.30 7.59 30.88 0.23 -2.07 16 14 C -0.09 -2.39 1.11 -52.31 -0.06 -2.45 16 15 C -0.12 -3.68 7.59 30.89 0.23 -3.45 16 16 C 0.14 5.79 4.48 45.63 0.20 6.00 16 17 N -0.73 -37.48 5.40 -319.92 -1.73 -39.21 16 18 C -0.25 -13.98 9.97 84.03 0.84 -13.14 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -60.00 13.06 21.65 0.28 -59.71 16 22 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.14 -4.94 7.64 30.88 0.24 -4.71 16 27 C -0.12 -2.65 7.64 30.88 0.24 -2.41 16 28 O -0.22 -4.06 10.78 -3.83 -0.04 -4.10 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 37 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.42 2.82 8.73 -92.71 -0.81 2.01 16 40 H 0.08 2.34 7.47 -2.38 -0.02 2.32 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 1.63 8.12 -2.39 -0.02 1.61 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 45 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 46 H 0.37 20.49 7.92 -92.71 -0.73 19.75 16 47 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 48 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 50 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -82.90 423.87 0.44 -82.46 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.61 Total: 28.85 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 6.33 Total: -11.84 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -7.23 Total: -126.16 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.09 Total: -22.19 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -82.90 0.44 -82.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121212527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.679 kcal (2) G-P(sol) polarization free energy of solvation -82.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds