Wall clock time and date at job start Sat Apr 11 2020 08:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 127.33724 * 2 1 4 4 O 1.20662 * 112.29936 * 179.73678 * 3 2 1 5 5 C 1.33495 * 113.15745 * 0.51271 * 4 3 2 6 6 C 1.50690 * 126.82802 * 179.77561 * 5 4 3 7 7 C 1.53000 * 117.50063 * 59.68844 * 6 5 4 8 8 C 1.53002 * 60.02940 * 252.49714 * 7 6 5 9 9 C 1.37362 * 106.34043 * 359.51392 * 5 4 3 10 10 C 1.47399 * 128.56607 * 180.28207 * 9 5 4 11 11 O 1.21601 * 119.99875 * 89.99801 * 10 9 5 12 12 N 1.34774 * 120.00207 * 270.00268 * 10 9 5 13 13 C 1.46933 * 120.62716 * 359.71471 * 12 10 9 14 14 C 1.52755 * 109.00902 * 233.58463 * 13 12 10 15 15 C 1.53043 * 109.38335 * 305.59092 * 14 13 12 16 16 H 1.09005 * 109.45986 * 181.25539 * 15 14 13 17 17 C 1.52999 * 109.46402 * 301.21860 * 15 14 13 18 18 C 1.53038 * 109.53897 * 61.24147 * 15 14 13 19 19 H 1.09005 * 109.49813 * 58.58166 * 18 15 14 20 20 C 1.53001 * 109.52886 * 178.66662 * 18 15 14 21 21 N 1.46492 * 109.47609 * 184.85476 * 20 18 15 22 22 C 1.36936 * 120.00194 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00013 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00073 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00018 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47399 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47174 * 119.99994 * 26 24 22 29 29 H 1.48497 * 109.47309 * 240.00216 * 26 24 22 30 30 C 1.46922 * 120.63550 * 179.97438 * 12 10 9 31 31 H 1.08998 * 109.46879 * 269.95779 * 1 2 3 32 32 H 1.09006 * 109.46945 * 29.94982 * 1 2 3 33 33 H 1.08996 * 109.47205 * 149.94971 * 1 2 3 34 34 H 1.09007 * 115.55011 * 205.35633 * 6 5 4 35 35 H 1.09002 * 117.49833 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.49953 * 144.99860 * 7 6 5 37 37 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 38 38 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 39 39 H 1.08994 * 109.58601 * 353.42297 * 13 12 10 40 40 H 1.09008 * 109.58083 * 113.84713 * 13 12 10 41 41 H 1.09003 * 109.56753 * 185.55319 * 14 13 12 42 42 H 1.09001 * 109.38767 * 65.51427 * 14 13 12 43 43 H 1.08989 * 109.47336 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.46798 * 300.07451 * 17 15 14 45 45 H 1.08998 * 109.46706 * 60.06513 * 17 15 14 46 46 H 1.09000 * 109.46892 * 304.85310 * 20 18 15 47 47 H 1.08997 * 109.46899 * 64.84926 * 20 18 15 48 48 H 0.97005 * 119.99812 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99298 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58731 * 246.15970 * 30 12 10 51 51 H 1.09011 * 109.58145 * 6.57922 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7207 0.0051 5 6 3.6495 -0.6009 -0.0015 6 6 4.9711 -1.3247 -0.0025 7 6 5.9173 -1.0695 1.1724 8 6 6.2360 -0.4870 -0.2060 9 6 2.3991 -1.1697 -0.0011 10 6 2.0400 -2.5992 -0.0012 11 8 1.8923 -3.1891 1.0518 12 7 1.8753 -3.2526 -1.1684 13 6 2.0444 -2.5520 -2.4488 14 6 0.7931 -2.7615 -3.2996 15 6 0.5159 -4.2605 -3.4348 16 1 -0.3639 -4.4122 -4.0602 17 6 1.7228 -4.9462 -4.0783 18 6 0.2665 -4.8618 -2.0497 19 1 -0.5779 -4.3568 -1.5805 20 6 -0.0433 -6.3537 -2.1881 21 7 -0.3952 -6.9032 -0.8765 22 6 -0.7132 -8.2293 -0.7526 23 1 -0.7050 -8.8701 -1.6219 24 6 -1.0461 -8.7501 0.4904 25 7 -1.0565 -7.9690 1.5497 26 14 -1.4805 -10.5589 0.6593 27 1 -1.3953 -11.2147 -0.6703 28 1 -0.5290 -11.2113 1.5943 29 1 -2.8620 -10.6889 1.1882 30 6 1.5179 -4.6776 -1.1848 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8905 -0.5131 33 1 -0.3633 -0.8895 -0.5146 34 1 4.9575 -2.3277 -0.4291 35 1 5.5840 -0.3777 1.9460 36 1 6.5262 -1.9046 1.5189 37 1 6.1122 0.5878 -0.3391 38 1 7.0542 -0.9390 -0.7665 39 1 2.1865 -1.4869 -2.2665 40 1 2.9112 -2.9539 -2.9735 41 1 0.9475 -2.3294 -4.2884 42 1 -0.0565 -2.2763 -2.8192 43 1 1.5253 -6.0137 -4.1751 44 1 1.9006 -4.5180 -5.0648 45 1 2.6026 -4.7952 -3.4529 46 1 -0.8790 -6.4890 -2.8747 47 1 0.8333 -6.8724 -2.5761 48 1 -0.4022 -6.3277 -0.0956 49 1 -1.2888 -8.3330 2.4184 50 1 2.3409 -5.2560 -1.6044 51 1 1.3127 -5.0145 -0.1685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132993336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:33 Heat of formation + Delta-G solvation = 58.491128 kcal Electronic energy + Delta-G solvation = -31981.848067 eV Core-core repulsion = 27885.537653 eV Total energy + Delta-G solvation = -4096.310414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.06303 -40.32999 -38.13294 -37.67884 -35.05664 -34.63712 -33.51098 -32.02694 -31.75446 -29.85984 -28.98400 -27.73292 -26.18970 -25.02467 -24.02775 -23.55897 -23.14692 -22.76926 -21.22419 -20.38488 -19.51223 -18.47163 -17.97438 -17.50933 -17.04901 -16.70242 -16.22699 -15.93755 -15.10667 -14.99030 -14.92108 -14.44419 -14.28377 -13.77645 -13.62211 -13.51065 -13.48564 -13.33686 -13.05080 -12.95469 -12.73148 -12.47131 -12.32997 -12.00770 -11.96713 -11.71546 -11.66326 -11.43060 -11.27587 -11.09115 -10.92526 -10.83145 -10.80750 -10.65953 -10.29394 -10.23677 -10.14722 -9.97177 -9.84014 -9.60343 -9.31304 -8.84486 -8.52022 -6.87805 -5.70994 -3.00744 1.05703 1.73629 2.40757 2.58251 3.07198 3.38247 3.46122 3.51126 3.53911 3.86408 3.94088 4.33678 4.41981 4.49997 4.56268 4.60740 4.69216 4.80890 4.89328 5.04638 5.12993 5.15966 5.23164 5.25061 5.30484 5.32001 5.35652 5.41498 5.51530 5.52999 5.60278 5.61460 5.64564 5.67796 5.69614 5.79084 5.83087 5.88965 5.93665 6.00278 6.12699 6.30031 6.32382 6.33885 6.54426 6.61103 6.76426 6.87978 7.39368 7.74026 8.02871 8.16325 8.46642 9.57791 10.15637 10.49619 11.51283 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002920 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.277234 B = 9587.595081 C =10110.924582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.043 3.957 6 C -0.092 4.092 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.231 4.231 10 C 0.593 3.407 11 O -0.512 6.512 12 N -0.598 5.598 13 C 0.109 3.891 14 C -0.128 4.128 15 C -0.085 4.085 16 H 0.074 0.926 17 C -0.153 4.153 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.120 3.880 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.021 0.979 47 H 0.023 0.977 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.071 0.929 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 18.986 -10.072 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.033 5.967 5 C -0.020 4.020 6 C -0.111 4.111 7 C -0.192 4.192 8 C -0.199 4.199 9 C -0.238 4.238 10 C 0.378 3.622 11 O -0.386 6.386 12 N -0.331 5.331 13 C -0.014 4.014 14 C -0.166 4.166 15 C -0.104 4.104 16 H 0.093 0.907 17 C -0.210 4.210 18 C -0.121 4.121 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.001 4.001 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.182 19.797 -9.538 25.125 hybrid contribution -0.503 -1.585 0.375 1.704 sum 11.678 18.213 -9.162 23.495 Atomic orbital electron populations 1.20248 0.85005 1.04110 1.04236 1.24754 0.98623 0.86411 1.00790 1.73619 0.89007 1.23183 1.20485 1.84485 1.21569 1.22333 1.68292 1.23472 0.95475 0.83440 0.99639 1.20493 0.83998 0.99375 1.07280 1.23127 1.00544 1.03890 0.91678 1.23111 0.96774 1.00210 0.99787 1.21856 0.92405 0.95548 1.13970 1.16928 0.77490 0.83770 0.83967 1.90902 1.49529 1.67451 1.30746 1.48089 1.68514 1.11527 1.05014 1.21635 0.98606 0.96945 0.84257 1.21866 0.97832 0.97225 0.99718 1.21077 0.99003 0.93653 0.96631 0.90721 1.21986 0.97940 1.01380 0.99687 1.21700 0.97610 0.98242 0.94586 0.90766 1.20672 0.97028 0.89235 0.89770 1.42428 1.82812 1.08441 1.04124 1.19233 1.38540 0.85878 0.93590 0.91206 1.24755 1.02602 0.97854 0.95694 1.69687 1.55025 1.34247 0.98736 0.86148 0.77679 0.85162 0.77375 1.20608 1.21886 1.21925 1.21832 0.96691 0.78199 1.03408 0.89388 0.89924 0.89675 0.84392 0.87983 0.87141 0.87659 0.87360 0.90682 0.90973 0.90785 0.91537 0.91699 0.93126 0.92487 0.96133 0.95918 0.78123 0.93540 0.91058 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.49 36.01 0.38 -0.44 16 2 C 0.06 0.71 7.54 -79.76 -0.60 0.11 16 3 N -0.36 -4.58 12.01 34.78 0.42 -4.16 16 4 O 0.09 1.12 10.86 18.65 0.20 1.32 16 5 C 0.04 0.49 7.00 -34.63 -0.24 0.25 16 6 C -0.09 -0.83 6.15 -91.74 -0.56 -1.39 16 7 C -0.16 -1.18 10.23 -26.73 -0.27 -1.45 16 8 C -0.16 -1.03 10.19 -26.69 -0.27 -1.30 16 9 C -0.23 -3.10 4.19 -102.89 -0.43 -3.53 16 10 C 0.59 9.41 7.52 -12.53 -0.09 9.32 16 11 O -0.51 -10.55 16.52 5.28 0.09 -10.46 16 12 N -0.60 -8.24 2.98 -174.28 -0.52 -8.76 16 13 C 0.11 1.12 5.85 -3.93 -0.02 1.09 16 14 C -0.13 -1.25 5.61 -26.83 -0.15 -1.40 16 15 C -0.08 -0.99 2.71 -90.58 -0.25 -1.23 16 16 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 18 C -0.10 -1.59 2.15 -90.48 -0.19 -1.79 16 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.16 3.13 5.19 -4.05 -0.02 3.11 16 21 N -0.73 -18.59 5.38 -59.91 -0.32 -18.91 16 22 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 26 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 C 0.12 1.94 5.05 -3.69 -0.02 1.92 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.74 6.30 -51.93 -0.33 0.42 16 40 H 0.07 0.65 6.70 -51.92 -0.35 0.30 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.77 6.57 -51.94 -0.34 0.42 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 48 H 0.38 10.48 6.89 -40.82 -0.28 10.20 16 49 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 50 H 0.07 1.10 6.69 -51.93 -0.35 0.75 16 51 H 0.10 2.15 6.20 -51.92 -0.32 1.82 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -34.07 406.24 -9.04 -43.11 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.03 Total: 7.58 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.70 Total: -5.47 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.30 Total: -59.87 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.29 Total: -9.14 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.07 -9.04 -43.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132993336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.604 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds