Wall clock time and date at job start Sat Apr 11 2020 08:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 127.33724 * 2 1 4 4 O 1.20662 * 112.29936 * 179.73678 * 3 2 1 5 5 C 1.33495 * 113.15745 * 0.51271 * 4 3 2 6 6 C 1.50690 * 126.82802 * 179.77561 * 5 4 3 7 7 C 1.53000 * 117.50063 * 59.68844 * 6 5 4 8 8 C 1.53002 * 60.02940 * 252.49714 * 7 6 5 9 9 C 1.37362 * 106.34043 * 359.51392 * 5 4 3 10 10 C 1.47399 * 128.56607 * 180.28207 * 9 5 4 11 11 O 1.21601 * 119.99875 * 89.99801 * 10 9 5 12 12 N 1.34774 * 120.00207 * 270.00268 * 10 9 5 13 13 C 1.46933 * 120.62716 * 359.71471 * 12 10 9 14 14 C 1.52755 * 109.00902 * 233.58463 * 13 12 10 15 15 C 1.53043 * 109.38335 * 305.59092 * 14 13 12 16 16 H 1.09005 * 109.45986 * 181.25539 * 15 14 13 17 17 C 1.52999 * 109.46402 * 301.21860 * 15 14 13 18 18 C 1.53038 * 109.53897 * 61.24147 * 15 14 13 19 19 H 1.09005 * 109.49813 * 58.58166 * 18 15 14 20 20 C 1.53001 * 109.52886 * 178.66662 * 18 15 14 21 21 N 1.46492 * 109.47609 * 184.85476 * 20 18 15 22 22 C 1.36936 * 120.00194 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00013 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00073 * 179.97438 * 22 21 20 25 25 N 1.31620 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00018 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47399 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47174 * 119.99994 * 26 24 22 29 29 H 1.48497 * 109.47309 * 240.00216 * 26 24 22 30 30 C 1.46922 * 120.63550 * 179.97438 * 12 10 9 31 31 H 1.08998 * 109.46879 * 269.95779 * 1 2 3 32 32 H 1.09006 * 109.46945 * 29.94982 * 1 2 3 33 33 H 1.08996 * 109.47205 * 149.94971 * 1 2 3 34 34 H 1.09007 * 115.55011 * 205.35633 * 6 5 4 35 35 H 1.09002 * 117.49833 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.49953 * 144.99860 * 7 6 5 37 37 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 38 38 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 39 39 H 1.08994 * 109.58601 * 353.42297 * 13 12 10 40 40 H 1.09008 * 109.58083 * 113.84713 * 13 12 10 41 41 H 1.09003 * 109.56753 * 185.55319 * 14 13 12 42 42 H 1.09001 * 109.38767 * 65.51427 * 14 13 12 43 43 H 1.08989 * 109.47336 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.46798 * 300.07451 * 17 15 14 45 45 H 1.08998 * 109.46706 * 60.06513 * 17 15 14 46 46 H 1.09000 * 109.46892 * 304.85310 * 20 18 15 47 47 H 1.08997 * 109.46899 * 64.84926 * 20 18 15 48 48 H 0.97005 * 119.99812 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99298 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58731 * 246.15970 * 30 12 10 51 51 H 1.09011 * 109.58145 * 6.57922 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7207 0.0051 5 6 3.6495 -0.6009 -0.0015 6 6 4.9711 -1.3247 -0.0025 7 6 5.9173 -1.0695 1.1724 8 6 6.2360 -0.4870 -0.2060 9 6 2.3991 -1.1697 -0.0011 10 6 2.0400 -2.5992 -0.0012 11 8 1.8923 -3.1891 1.0518 12 7 1.8753 -3.2526 -1.1684 13 6 2.0444 -2.5520 -2.4488 14 6 0.7931 -2.7615 -3.2996 15 6 0.5159 -4.2605 -3.4348 16 1 -0.3639 -4.4122 -4.0602 17 6 1.7228 -4.9462 -4.0783 18 6 0.2665 -4.8618 -2.0497 19 1 -0.5779 -4.3568 -1.5805 20 6 -0.0433 -6.3537 -2.1881 21 7 -0.3952 -6.9032 -0.8765 22 6 -0.7132 -8.2293 -0.7526 23 1 -0.7050 -8.8701 -1.6219 24 6 -1.0461 -8.7501 0.4904 25 7 -1.0565 -7.9690 1.5497 26 14 -1.4805 -10.5589 0.6593 27 1 -1.3953 -11.2147 -0.6703 28 1 -0.5290 -11.2113 1.5943 29 1 -2.8620 -10.6889 1.1882 30 6 1.5179 -4.6776 -1.1848 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8905 -0.5131 33 1 -0.3633 -0.8895 -0.5146 34 1 4.9575 -2.3277 -0.4291 35 1 5.5840 -0.3777 1.9460 36 1 6.5262 -1.9046 1.5189 37 1 6.1122 0.5878 -0.3391 38 1 7.0542 -0.9390 -0.7665 39 1 2.1865 -1.4869 -2.2665 40 1 2.9112 -2.9539 -2.9735 41 1 0.9475 -2.3294 -4.2884 42 1 -0.0565 -2.2763 -2.8192 43 1 1.5253 -6.0137 -4.1751 44 1 1.9006 -4.5180 -5.0648 45 1 2.6026 -4.7952 -3.4529 46 1 -0.8790 -6.4890 -2.8747 47 1 0.8333 -6.8724 -2.5761 48 1 -0.4022 -6.3277 -0.0956 49 1 -1.2888 -8.3330 2.4184 50 1 2.3409 -5.2560 -1.6044 51 1 1.3127 -5.0145 -0.1685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132993336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:32 Heat of formation + Delta-G solvation = 37.889085 kcal Electronic energy + Delta-G solvation = -31982.741439 eV Core-core repulsion = 27885.537653 eV Total energy + Delta-G solvation = -4097.203786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.02925 -41.51785 -39.36150 -38.36142 -36.67020 -35.73998 -34.85471 -33.52393 -32.84873 -31.49382 -29.87962 -28.77182 -27.66669 -26.29180 -24.95626 -24.86442 -24.48208 -23.32363 -22.59983 -21.48922 -20.49014 -19.67960 -18.98166 -18.93715 -18.49285 -17.74776 -17.25709 -16.93220 -16.77328 -16.16015 -16.01234 -15.72038 -15.42587 -15.21684 -14.99900 -14.59472 -14.41281 -14.39491 -14.34983 -14.16538 -13.93101 -13.79515 -13.11237 -13.06436 -13.04384 -12.88827 -12.67504 -12.57042 -12.45947 -12.44651 -12.18968 -12.12828 -12.01335 -11.90140 -11.75725 -11.47728 -11.46355 -11.27415 -11.21439 -10.95829 -10.91783 -10.22334 -9.70724 -8.99262 -7.93817 -5.23864 0.13031 0.74408 1.21159 1.45927 1.47511 1.57594 1.58086 1.99720 2.55894 2.74472 2.95131 3.10278 3.39514 3.44159 3.59145 3.67641 3.76294 3.81010 3.86224 3.93472 4.03021 4.13410 4.19817 4.24304 4.37190 4.39056 4.43975 4.47860 4.48676 4.56988 4.63147 4.67740 4.73702 4.76356 4.81601 4.88995 4.90864 4.97377 4.99145 5.03152 5.10966 5.16982 5.18883 5.25796 5.29956 5.38570 5.44704 5.50257 5.60737 6.23140 6.26994 6.94403 7.07759 7.32593 8.09479 8.31004 9.29767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002920 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.277234 B = 9587.595081 C =10110.924582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.366 5.366 4 O 0.098 5.902 5 C 0.064 3.936 6 C -0.118 4.118 7 C -0.160 4.160 8 C -0.133 4.133 9 C -0.258 4.258 10 C 0.596 3.404 11 O -0.574 6.574 12 N -0.589 5.589 13 C 0.105 3.895 14 C -0.122 4.122 15 C -0.078 4.078 16 H 0.082 0.918 17 C -0.150 4.150 18 C -0.090 4.090 19 H 0.051 0.949 20 C 0.160 3.840 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.129 3.871 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.025 0.975 47 H 0.033 0.967 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.081 0.919 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 20.001 -13.205 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.074 5.074 4 O 0.038 5.962 5 C 0.001 3.999 6 C -0.137 4.137 7 C -0.197 4.197 8 C -0.169 4.169 9 C -0.266 4.266 10 C 0.383 3.617 11 O -0.453 6.453 12 N -0.320 5.320 13 C -0.016 4.016 14 C -0.160 4.160 15 C -0.097 4.097 16 H 0.101 0.899 17 C -0.207 4.207 18 C -0.109 4.109 19 H 0.070 0.930 20 C 0.034 3.966 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.222 1.222 30 C 0.007 3.993 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.099 0.901 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.725 20.836 -12.776 28.031 hybrid contribution -0.920 -1.859 1.288 2.442 sum 12.805 18.977 -11.488 25.614 Atomic orbital electron populations 1.20328 0.83876 1.05017 1.04408 1.25036 0.99460 0.86012 1.00297 1.73605 0.89280 1.23241 1.21262 1.84473 1.21271 1.22329 1.68114 1.23857 0.95900 0.83140 0.97051 1.20668 0.83858 0.99851 1.09353 1.23237 1.00032 1.04422 0.92045 1.23244 0.95168 1.00224 0.98305 1.21614 0.93710 0.94265 1.16971 1.17237 0.76417 0.84590 0.83483 1.90867 1.52484 1.68998 1.32987 1.48108 1.67132 1.10594 1.06142 1.21943 0.99970 0.97250 0.82432 1.21868 0.97142 0.95601 1.01382 1.21057 1.00153 0.94907 0.93566 0.89918 1.21964 0.97028 1.00549 1.01137 1.21556 0.96349 0.95747 0.97275 0.93009 1.20862 0.97132 0.91617 0.87027 1.42696 1.82837 1.07716 1.05856 1.19692 1.36742 0.87165 0.93783 0.90240 1.25632 1.03652 1.02335 0.95524 1.69877 1.57079 1.36242 0.99049 0.85053 0.76762 0.79971 0.77864 1.18566 1.22215 1.22193 1.21514 0.97366 0.79864 1.00566 0.89583 0.87685 0.90025 0.84421 0.88617 0.86087 0.87087 0.84967 0.89727 0.88641 0.87128 0.92158 0.93081 0.90144 0.92510 0.95749 0.94937 0.79828 0.94204 0.90069 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.49 71.24 0.75 -0.88 16 2 C 0.05 1.35 7.54 45.16 0.34 1.69 16 3 N -0.37 -9.07 12.01 -44.77 -0.54 -9.61 16 4 O 0.10 2.21 10.86 76.97 0.84 3.05 16 5 C 0.06 1.42 7.00 25.48 0.18 1.60 16 6 C -0.12 -1.97 6.15 -11.52 -0.07 -2.04 16 7 C -0.16 -2.21 10.23 30.60 0.31 -1.90 16 8 C -0.13 -1.32 10.19 30.62 0.31 -1.00 16 9 C -0.26 -6.99 4.19 -18.74 -0.08 -7.06 16 10 C 0.60 19.77 7.52 86.66 0.65 20.42 16 11 O -0.57 -25.61 16.52 -4.03 -0.07 -25.68 16 12 N -0.59 -16.38 2.98 -823.57 -2.45 -18.83 16 13 C 0.11 1.92 5.85 86.22 0.50 2.43 16 14 C -0.12 -2.01 5.61 30.53 0.17 -1.84 16 15 C -0.08 -1.64 2.71 -10.77 -0.03 -1.67 16 16 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 17 C -0.15 -2.70 8.11 71.98 0.58 -2.12 16 18 C -0.09 -2.83 2.15 -10.70 -0.02 -2.85 16 19 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 20 C 0.16 6.27 5.19 86.38 0.45 6.72 16 21 N -0.75 -39.28 5.38 -343.47 -1.85 -41.13 16 22 C -0.24 -13.83 9.99 84.03 0.84 -12.99 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 25 N -0.97 -62.63 13.06 21.65 0.28 -62.35 16 26 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 27 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 30 C 0.13 4.34 5.05 86.38 0.44 4.78 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.02 8.03 -2.39 -0.02 1.00 16 38 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.46 6.30 -2.39 -0.02 1.45 16 40 H 0.10 1.37 6.70 -2.38 -0.02 1.35 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.07 6.57 -2.39 -0.02 1.06 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.03 4.99 -2.39 -0.01 1.02 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.03 1.24 6.73 -2.39 -0.02 1.22 16 48 H 0.37 21.42 6.89 -92.70 -0.64 20.78 16 49 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 50 H 0.08 2.53 6.69 -2.39 -0.02 2.51 16 51 H 0.05 2.36 6.20 -2.38 -0.01 2.35 16 Total: -1.00 -78.39 406.24 4.35 -74.04 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.31 Total: 32.03 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.79 Total: -0.99 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -4.55 Total: -131.92 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.77 Total: -22.63 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.39 4.35 -74.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132993336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.930 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds