Wall clock time and date at job start Sat Apr 11 2020 08:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46748 * 2 1 4 4 N 1.34661 * 125.79963 * 265.05118 * 3 2 1 5 5 H 0.97003 * 124.84915 * 359.96149 * 4 3 2 6 6 C 1.36445 * 110.29931 * 179.97438 * 4 3 2 7 7 C 1.34487 * 108.85460 * 359.97438 * 6 4 3 8 8 C 1.36766 * 125.80179 * 85.00564 * 3 2 1 9 9 C 1.47258 * 126.94562 * 0.02562 * 8 3 2 10 10 O 1.21628 * 120.00113 * 318.58196 * 9 8 3 11 11 N 1.34772 * 120.00201 * 138.57753 * 9 8 3 12 12 C 1.47162 * 121.05963 * 184.21011 * 11 9 8 13 13 C 1.53287 * 108.49904 * 128.78386 * 12 11 9 14 14 H 1.09006 * 109.51420 * 293.00691 * 13 12 11 15 15 C 1.52998 * 109.51461 * 172.90782 * 13 12 11 16 16 O 1.43084 * 109.22520 * 52.98271 * 13 12 11 17 17 C 1.42065 * 114.39730 * 298.85445 * 16 13 12 18 18 C 1.54519 * 110.33689 * 182.56170 * 17 16 13 19 19 C 1.55020 * 101.52757 * 83.93774 * 18 17 16 20 20 N 1.47486 * 104.90251 * 36.37552 * 19 18 17 21 21 C 1.36934 * 125.66759 * 156.00136 * 20 19 18 22 22 H 1.07998 * 119.99990 * 149.69168 * 21 20 19 23 23 C 1.38813 * 119.99781 * 329.69644 * 21 20 19 24 24 N 1.31615 * 120.00042 * 159.24285 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 339.23860 * 23 21 20 26 26 H 1.48503 * 109.46812 * 93.77640 * 25 23 21 27 27 H 1.48498 * 109.47300 * 213.77625 * 25 23 21 28 28 H 1.48505 * 109.47257 * 333.77967 * 25 23 21 29 29 C 1.47181 * 108.66794 * 335.98000 * 20 19 18 30 30 C 1.47291 * 121.05854 * 3.92906 * 11 9 8 31 31 H 1.09000 * 109.47182 * 59.99836 * 1 2 3 32 32 H 1.08996 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46718 * 299.99815 * 1 2 3 34 34 H 1.08996 * 109.46620 * 239.99852 * 2 1 3 35 35 H 1.08993 * 109.47002 * 119.99786 * 2 1 3 36 36 H 1.08001 * 125.57244 * 180.27211 * 6 4 3 37 37 H 1.07999 * 126.83227 * 179.97438 * 7 6 4 38 38 H 1.09003 * 109.63188 * 248.48603 * 12 11 9 39 39 H 1.08998 * 109.63469 * 9.08137 * 12 11 9 40 40 H 1.08998 * 109.47321 * 59.99728 * 15 13 12 41 41 H 1.09004 * 109.47365 * 180.02562 * 15 13 12 42 42 H 1.09009 * 109.47062 * 299.99702 * 15 13 12 43 43 H 1.08999 * 111.01299 * 201.99583 * 18 17 16 44 44 H 1.08995 * 111.01542 * 325.83996 * 18 17 16 45 45 H 1.09004 * 110.35398 * 155.23060 * 19 18 17 46 46 H 1.08997 * 110.35782 * 277.41032 * 19 18 17 47 47 H 0.97000 * 120.00509 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.91008 * 242.13861 * 29 20 19 49 49 H 1.09005 * 109.90803 * 120.87781 * 29 20 19 50 50 H 1.09001 * 109.63681 * 349.04687 * 30 11 9 51 51 H 1.08992 * 109.64360 * 109.66137 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3836 2.1321 -1.0881 5 1 2.3515 1.8026 -1.9999 6 6 2.7916 3.3825 -0.7249 7 6 2.7078 3.4956 0.6126 8 6 2.2079 2.2074 1.1050 9 6 1.9474 1.8362 2.5060 10 8 0.9532 1.1960 2.7908 11 7 2.8106 2.2059 3.4728 12 6 2.6223 1.7704 4.8659 13 6 3.9353 1.1570 5.3653 14 1 4.1348 0.2326 4.8231 15 6 3.8229 0.8576 6.8615 16 8 5.0030 2.0830 5.1421 17 6 5.2151 2.4162 3.7775 18 6 6.4248 3.3675 3.6387 19 6 7.6070 2.3649 3.6222 20 7 7.1021 1.1954 2.8789 21 6 7.8720 0.2782 2.2148 22 1 7.5369 -0.7446 2.1254 23 6 9.0833 0.6630 1.6567 24 7 10.0010 -0.2414 1.3879 25 14 9.4110 2.4645 1.2868 26 1 10.1184 3.0849 2.4357 27 1 10.2534 2.5745 0.0688 28 1 8.1216 3.1662 1.0620 29 6 5.6332 1.1775 2.9701 30 6 3.9758 3.0535 3.1676 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.1228 4.1565 -1.4013 37 1 2.9593 4.3621 1.2061 38 1 2.3598 2.6281 5.4853 39 1 1.8287 1.0248 4.9124 40 1 3.0066 0.1556 7.0313 41 1 4.7571 0.4218 7.2160 42 1 3.6253 1.7826 7.4033 43 1 6.3754 3.9291 2.7058 44 1 6.4935 4.0397 4.4940 45 1 8.4650 2.7989 3.1087 46 1 7.8782 2.0817 4.6392 47 1 10.8473 0.0274 0.9975 48 1 5.3040 0.2729 3.4811 49 1 5.1988 1.2215 1.9713 50 1 4.0992 3.1315 2.0874 51 1 3.8294 4.0454 3.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071164823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:27:07 Heat of formation + Delta-G solvation = 7.770914 kcal Electronic energy + Delta-G solvation = -33207.027558 eV Core-core repulsion = 29108.517751 eV Total energy + Delta-G solvation = -4098.509808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45173 -40.29042 -38.44695 -36.45626 -34.72538 -33.62297 -33.16742 -31.74455 -31.03061 -29.69627 -28.59256 -28.38247 -26.70649 -25.90170 -23.67768 -23.46859 -22.26131 -21.35589 -21.01398 -20.63125 -19.23834 -18.36816 -17.71008 -17.11639 -16.58813 -16.28409 -15.81625 -15.67321 -15.09814 -14.70399 -14.49730 -14.32849 -14.03609 -13.82612 -13.74116 -13.56631 -13.40391 -13.24042 -12.88635 -12.67756 -12.55074 -12.40935 -12.24095 -12.10421 -11.98606 -11.81125 -11.49521 -11.45565 -11.29765 -11.22486 -11.02719 -10.93909 -10.82617 -10.54919 -10.32888 -9.87981 -9.71386 -9.58974 -9.42997 -8.79304 -8.53244 -8.36312 -8.16091 -6.88172 -5.97293 -3.33144 1.88735 2.40057 2.87388 3.22776 3.31605 3.41101 3.44228 3.49209 3.80124 4.52964 4.62997 4.67365 4.73934 4.90316 4.96625 5.00208 5.07669 5.12803 5.21877 5.27115 5.28961 5.31247 5.39011 5.45807 5.50835 5.51660 5.56260 5.69840 5.74187 5.74782 5.77898 5.82856 5.91021 5.96045 6.01854 6.08016 6.13975 6.17862 6.23408 6.25623 6.41705 6.49712 6.54626 6.66557 6.71251 6.87571 6.90670 7.37704 7.50999 7.56771 7.84532 8.33054 8.34912 8.85435 9.67987 10.23887 11.19328 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.004834 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.237249 B = 5791.485825 C = 7381.441846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C 0.102 3.898 4 N -0.550 5.550 5 H 0.415 0.585 6 C -0.011 4.011 7 C -0.173 4.173 8 C -0.227 4.227 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.607 5.607 12 C 0.087 3.913 13 C 0.069 3.931 14 H 0.069 0.931 15 C -0.139 4.139 16 O -0.357 6.357 17 C 0.094 3.906 18 C -0.120 4.120 19 C 0.124 3.876 20 N -0.605 5.605 21 C -0.242 4.242 22 H 0.083 0.917 23 C 0.028 3.972 24 N -0.906 5.906 25 Si 0.887 3.113 26 H -0.285 1.285 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.121 3.879 30 C 0.085 3.915 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.263 0.737 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.113 0.887 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 7.686 -0.229 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.015 4.015 4 N -0.145 5.145 5 H 0.252 0.748 6 C -0.138 4.138 7 C -0.197 4.197 8 C -0.236 4.236 9 C 0.390 3.610 10 O -0.427 6.427 11 N -0.339 5.339 12 C -0.036 4.036 13 C 0.011 3.989 14 H 0.087 0.913 15 C -0.197 4.197 16 O -0.276 6.276 17 C 0.053 3.947 18 C -0.159 4.159 19 C 0.000 4.000 20 N -0.333 5.333 21 C -0.370 4.370 22 H 0.101 0.899 23 C -0.171 4.171 24 N -0.549 5.549 25 Si 0.719 3.281 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.196 1.196 29 C -0.004 4.004 30 C -0.038 4.038 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.131 0.869 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.028 7.290 -0.180 19.447 hybrid contribution 0.438 0.922 -0.935 1.384 sum -17.590 8.212 -1.114 19.444 Atomic orbital electron populations 1.21744 0.93791 1.01943 1.02759 1.20176 0.96831 0.89150 1.03545 1.20172 1.00897 0.94779 0.85651 1.41521 1.52214 1.12029 1.08738 0.74817 1.21710 1.07620 0.88014 0.96504 1.22003 1.06481 0.97512 0.93694 1.19952 1.15260 0.96537 0.91889 1.17404 0.81750 0.77929 0.83929 1.90716 1.27508 1.41343 1.83137 1.47953 1.26348 1.51586 1.08057 1.22309 0.98880 1.00698 0.81670 1.22488 0.86140 0.92997 0.97269 0.91316 1.21681 1.02792 1.02057 0.93165 1.87820 1.52352 1.63232 1.24225 1.22158 0.93735 0.96262 0.82532 1.22741 0.93970 0.97110 1.02039 1.21860 0.94365 0.87866 0.95935 1.44627 0.99950 1.29410 1.59263 1.18538 1.00421 0.89770 1.28242 0.89935 1.25245 0.96525 0.97263 0.98088 1.69831 1.05746 1.33355 1.45934 0.86752 0.77528 0.87174 0.76681 1.21371 1.23222 1.19648 1.21842 0.86773 0.94878 0.96928 1.22557 0.84372 0.93402 1.03443 0.93466 0.92296 0.90552 0.91167 0.89296 0.81358 0.83676 0.91055 0.88363 0.91061 0.91265 0.91857 0.90003 0.90119 0.94060 0.94459 0.92695 0.94849 0.94506 0.86894 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 37.16 0.37 -1.17 16 2 C -0.06 -0.68 5.88 -27.88 -0.16 -0.84 16 3 C 0.10 1.31 6.43 -81.88 -0.53 0.78 16 4 N -0.55 -5.58 5.90 -9.11 -0.05 -5.63 16 5 H 0.42 2.89 8.96 -40.82 -0.37 2.53 16 6 C -0.01 -0.11 11.89 -16.83 -0.20 -0.31 16 7 C -0.17 -2.11 8.65 -37.50 -0.32 -2.43 16 8 C -0.23 -3.25 5.47 -103.35 -0.57 -3.82 16 9 C 0.60 9.48 7.38 -12.60 -0.09 9.39 16 10 O -0.55 -9.57 14.87 5.25 0.08 -9.49 16 11 N -0.61 -8.96 2.95 -174.21 -0.51 -9.48 16 12 C 0.09 1.17 5.90 -3.53 -0.02 1.15 16 13 C 0.07 1.00 3.17 -26.58 -0.08 0.91 16 14 H 0.07 1.12 6.25 -51.93 -0.32 0.79 16 15 C -0.14 -1.58 9.57 37.16 0.36 -1.23 16 16 O -0.36 -6.02 9.90 -35.23 -0.35 -6.37 16 17 C 0.09 1.61 0.80 -89.93 -0.07 1.54 16 18 C -0.12 -2.09 6.21 -24.87 -0.15 -2.24 16 19 C 0.12 2.76 6.26 -2.44 -0.02 2.74 16 20 N -0.61 -15.01 3.03 -170.24 -0.52 -15.53 16 21 C -0.24 -7.00 10.51 -15.06 -0.16 -7.15 16 22 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 23 C 0.03 0.83 5.43 -17.43 -0.09 0.74 16 24 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 25 Si 0.89 22.46 24.78 -169.99 -4.21 18.25 16 26 H -0.29 -7.06 6.79 56.52 0.38 -6.68 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 28 H -0.27 -6.56 7.07 56.52 0.40 -6.16 16 29 C 0.12 2.54 6.34 -3.33 -0.02 2.52 16 30 C 0.09 1.23 4.37 -4.06 -0.02 1.21 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.99 6.82 -51.93 -0.35 0.64 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.15 1.55 7.19 -52.49 -0.38 1.18 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.32 7.11 -51.93 -0.37 0.95 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.98 2.83 -51.93 -0.15 0.83 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.03 0.73 6.03 -51.93 -0.31 0.42 16 49 H 0.04 0.80 7.59 -51.93 -0.39 0.40 16 50 H 0.11 1.65 4.08 -51.93 -0.21 1.44 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -34.87 389.29 -8.63 -43.51 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.92 Total: 4.34 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.79 Total: 1.78 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.31 Total: -57.89 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.27 Total: -15.86 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.21 Total: 18.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.87 -8.63 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071164823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.279 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds