Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47845 * 111.00014 * 2 1 4 4 C 1.54912 * 104.79652 * 146.36182 * 3 2 1 5 5 C 1.55138 * 101.65196 * 322.92541 * 4 3 2 6 6 C 1.47445 * 110.99738 * 120.83665 * 2 1 3 7 7 H 1.09005 * 109.88794 * 117.17246 * 6 2 1 8 8 C 1.50707 * 109.88709 * 356.15280 * 6 2 1 9 9 C 1.35362 * 126.38608 * 117.48149 * 8 6 2 10 10 C 1.41505 * 105.50261 * 180.25778 * 9 8 6 11 11 C 1.47710 * 126.51934 * 179.76427 * 10 9 8 12 12 O 1.21575 * 119.99961 * 359.97179 * 11 10 9 13 13 N 1.34777 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99723 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.47318 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99440 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00221 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00111 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47200 * 89.99961 * 19 17 15 21 21 H 1.48498 * 109.46965 * 209.99874 * 19 17 15 22 22 H 1.48501 * 109.47194 * 330.00207 * 19 17 15 23 23 N 1.31811 * 106.96322 * 359.76119 * 10 9 8 24 24 N 1.28470 * 110.07399 * 0.02562 * 23 10 9 25 25 H 0.96993 * 124.89106 * 179.97438 * 24 23 10 26 26 H 1.09001 * 109.47095 * 306.03355 * 1 2 3 27 27 H 1.09002 * 109.46931 * 66.02945 * 1 2 3 28 28 H 1.08994 * 109.47640 * 186.03201 * 1 2 3 29 29 H 1.08994 * 110.37252 * 265.18883 * 3 2 1 30 30 H 1.09001 * 110.37648 * 27.41737 * 3 2 1 31 31 H 1.08992 * 110.99013 * 81.01553 * 4 3 2 32 32 H 1.08999 * 110.98996 * 204.79868 * 4 3 2 33 33 H 1.08999 * 110.70693 * 277.27165 * 5 4 3 34 34 H 1.08997 * 110.70551 * 154.03333 * 5 4 3 35 35 H 1.07998 * 127.25100 * 0.02562 * 9 8 6 36 36 H 0.97002 * 120.00066 * 359.97438 * 13 11 10 37 37 H 1.09005 * 109.47593 * 299.99630 * 14 13 11 38 38 H 1.09003 * 109.47967 * 59.99946 * 14 13 11 39 39 H 0.96992 * 120.00020 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9158 0.2823 1.9316 6 6 1.9973 -0.7056 1.1819 7 1 2.5672 -1.5801 0.8677 8 6 0.8609 -1.1290 2.0767 9 6 0.5236 -2.3995 2.3996 10 6 -0.6012 -2.2875 3.2509 11 6 -1.3481 -3.4005 3.8716 12 8 -1.0086 -4.5497 3.6661 13 7 -2.4059 -3.1420 4.6657 14 6 -3.1463 -4.2458 5.2817 15 6 -4.2731 -3.6916 6.1152 16 1 -4.4228 -2.6240 6.1792 17 6 -5.1132 -4.5476 6.7952 18 7 -4.9312 -5.8478 6.7168 19 14 -6.5102 -3.8607 7.8276 20 1 -7.7284 -3.7303 6.9883 21 1 -6.7860 -4.7795 8.9612 22 1 -6.1267 -2.5261 8.3541 23 7 -0.8557 -1.0012 3.3846 24 7 -0.0094 -0.3115 2.7074 25 1 0.0008 0.6569 2.6538 26 1 -0.3633 0.6045 0.8311 27 1 -0.3633 0.4175 -0.9391 28 1 -0.3634 -1.0219 0.1080 29 1 2.2148 1.7038 -1.0182 30 1 1.2880 2.0596 0.4705 31 1 4.1301 0.9281 0.2244 32 1 3.5498 2.2722 1.2635 33 1 2.3743 0.7749 2.7392 34 1 3.7999 -0.2278 2.3139 35 1 1.0083 -3.3077 2.0730 36 1 -2.6766 -2.2251 4.8299 37 1 -3.5534 -4.8901 4.5024 38 1 -2.4752 -4.8238 5.9171 39 1 -5.5224 -6.4500 7.1949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897591120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 47.346050 kcal Electronic energy + Delta-G solvation = -21235.932464 eV Core-core repulsion = 17987.234042 eV Total energy + Delta-G solvation = -3248.698423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.89537 -39.36021 -38.33978 -34.15777 -32.65935 -32.37003 -31.88253 -31.64892 -28.18074 -27.26016 -26.03347 -24.05179 -22.35899 -21.74512 -21.55136 -20.88049 -19.34737 -17.61551 -17.10829 -16.57662 -15.94187 -15.66591 -15.37988 -15.02305 -14.44024 -14.19443 -14.13569 -13.95968 -13.63136 -13.43094 -13.00532 -12.84247 -12.00160 -11.91547 -11.86365 -11.79314 -11.68308 -11.54137 -11.26820 -10.97015 -10.86274 -10.75389 -10.29468 -9.36825 -9.29088 -9.27084 -9.20269 -8.69555 -8.65862 -7.83110 -6.12701 -4.19003 1.73991 2.18142 2.77672 3.27548 3.33323 3.36340 3.61149 3.94085 4.03513 4.13587 4.21332 4.30168 4.42020 4.64743 4.74163 4.91796 4.92951 5.05910 5.11163 5.23194 5.23475 5.37062 5.42206 5.52295 5.64417 5.67334 5.68812 5.78750 5.94679 6.44222 6.48408 6.54819 6.91133 7.34090 7.45378 7.55405 7.69507 7.91793 8.01328 8.68409 8.81645 9.11318 9.47043 10.97676 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.003154 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.207059 B = 8874.797495 C = 9153.895448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.138 4.138 6 C 0.142 3.858 7 H 0.115 0.885 8 C -0.007 4.007 9 C -0.165 4.165 10 C 0.005 3.995 11 C 0.582 3.418 12 O -0.547 6.547 13 N -0.695 5.695 14 C 0.248 3.752 15 C -0.542 4.542 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.256 5.256 24 N -0.385 5.385 25 H 0.438 0.562 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.397 0.603 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.669 16.920 -12.662 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.177 4.177 6 C 0.033 3.967 7 H 0.133 0.867 8 C -0.133 4.133 9 C -0.193 4.193 10 C -0.157 4.157 11 C 0.364 3.636 12 O -0.424 6.424 13 N -0.343 5.343 14 C 0.128 3.872 15 C -0.580 4.580 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.091 5.091 24 N -0.101 5.101 25 H 0.282 0.718 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.180 0.820 36 H 0.230 0.770 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.207 16.313 -12.637 25.633 hybrid contribution -0.761 1.132 1.000 1.692 sum 14.445 17.445 -11.637 25.464 Atomic orbital electron populations 1.22736 0.87047 1.02738 1.00678 1.63867 1.08544 1.14214 1.37974 1.23188 0.95663 0.89316 1.01104 1.22729 0.97829 0.99405 0.96786 1.22900 1.00146 0.96830 0.97854 1.21192 0.90697 0.98519 0.86302 0.86714 1.21532 0.97982 0.91183 1.02570 1.21565 0.98793 0.96791 1.02194 1.22398 0.99310 0.90763 1.03190 1.16971 0.80781 0.86216 0.79655 1.90758 1.68411 1.20466 1.62766 1.46375 1.29068 1.12294 1.46529 1.19185 0.90508 0.84627 0.92909 1.21232 1.13311 0.93531 1.29933 0.91834 1.24942 0.97819 0.94730 0.96512 1.69974 1.38249 1.01952 1.42181 0.86407 0.81930 0.78824 0.79705 1.20471 1.21013 1.19746 1.73638 1.14884 1.05188 1.15412 1.43501 1.21884 1.09495 1.35180 0.71775 0.95772 0.91070 0.90348 0.89670 0.93638 0.90061 0.90478 0.91536 0.89576 0.81988 0.76965 0.95207 0.95213 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.30 60.06 0.50 0.65 16 2 N -0.52 -4.35 5.44 -232.94 -1.27 -5.62 16 3 C 0.03 0.21 6.73 -2.30 -0.02 0.20 16 4 C -0.13 -0.67 7.08 -24.59 -0.17 -0.85 16 5 C -0.14 -0.90 6.46 -24.91 -0.16 -1.06 16 6 C 0.14 1.20 3.90 -67.87 -0.26 0.94 16 7 H 0.12 0.95 8.13 -51.93 -0.42 0.53 16 8 C -0.01 -0.08 3.67 -82.20 -0.30 -0.38 16 9 C -0.16 -2.41 10.72 -39.36 -0.42 -2.83 16 10 C 0.01 0.09 7.13 -82.76 -0.59 -0.50 16 11 C 0.58 12.89 7.82 -12.39 -0.10 12.79 16 12 O -0.55 -13.84 16.93 5.30 0.09 -13.75 16 13 N -0.70 -16.00 5.55 -62.47 -0.35 -16.35 16 14 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 15 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 16 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 N -0.26 -3.93 11.92 33.42 0.40 -3.53 16 24 N -0.39 -4.35 5.13 33.50 0.17 -4.17 16 25 H 0.44 3.60 7.86 -190.45 -1.50 2.10 16 26 H 0.02 0.20 5.40 -51.93 -0.28 -0.08 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.88 7.14 -51.93 -0.37 0.51 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.26 7.68 -51.93 -0.40 -0.14 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.45 7.58 -51.93 -0.39 0.05 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 36 H 0.40 8.32 8.05 -40.82 -0.33 8.00 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 323.86 15.07 4.88 4.88 Total: -1.00 -32.97 323.86 -8.94 -41.91 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.61 Total: 4.14 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.97 Total: 1.98 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.31 Total: -55.39 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.97 -8.94 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.257 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds