Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34942 * 126.03717 * 2 1 4 4 C 1.35316 * 107.74360 * 180.02562 * 3 2 1 5 5 C 1.39867 * 107.92462 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.90090 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47276 * 125.00423 * 6 5 4 8 8 O 1.21283 * 119.99815 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00357 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00433 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.91642 * 328.89951 * 10 9 7 12 12 C 1.55154 * 111.00786 * 205.00008 * 10 9 7 13 13 C 1.54327 * 103.10091 * 277.51449 * 12 10 9 14 14 N 1.47018 * 107.27369 * 337.71727 * 13 12 10 15 15 C 1.36936 * 125.64821 * 178.90006 * 14 13 12 16 16 H 1.08007 * 119.99563 * 174.87901 * 15 14 13 17 17 C 1.38809 * 120.00500 * 354.88350 * 15 14 13 18 18 N 1.31618 * 119.99478 * 7.06097 * 17 15 14 19 19 Si 1.86787 * 120.00238 * 187.05976 * 17 15 14 20 20 H 1.48508 * 109.47225 * 94.98730 * 19 17 15 21 21 H 1.48503 * 109.47485 * 214.98421 * 19 17 15 22 22 H 1.48503 * 109.47359 * 334.98783 * 19 17 15 23 23 C 1.47431 * 108.70227 * 358.94151 * 14 13 12 24 24 N 1.30837 * 108.19978 * 0.26351 * 5 4 3 25 25 H 1.08992 * 109.47207 * 90.00191 * 1 2 3 26 26 H 1.09004 * 109.47055 * 210.00422 * 1 2 3 27 27 H 1.08996 * 109.47081 * 329.99565 * 1 2 3 28 28 H 1.08001 * 126.13062 * 359.96344 * 3 2 1 29 29 H 1.08005 * 126.03677 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47541 * 4.99695 * 6 5 4 31 31 H 1.09004 * 109.47299 * 245.00084 * 6 5 4 32 32 H 0.97012 * 119.99893 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.72561 * 159.06597 * 12 10 9 34 34 H 1.09000 * 110.72415 * 35.96443 * 12 10 9 35 35 H 1.09001 * 109.87982 * 97.13772 * 13 12 10 36 36 H 1.09001 * 109.88219 * 218.30077 * 13 12 10 37 37 H 0.97002 * 120.00252 * 179.97438 * 18 17 15 38 38 H 1.08993 * 110.36520 * 142.96534 * 23 14 13 39 39 H 1.09000 * 110.36458 * 265.28812 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 3.5346 -0.7322 -0.0003 6 6 4.7496 -1.6237 -0.0003 7 6 4.6725 -2.5778 1.1637 8 8 3.7246 -2.5374 1.9191 9 7 5.6575 -3.4752 1.3658 10 6 5.5829 -4.4023 2.4976 11 1 5.0564 -3.9493 3.3377 12 6 6.9975 -4.8794 2.9200 13 6 7.2918 -6.0236 1.9270 14 7 5.9982 -6.5102 1.4258 15 6 5.8234 -7.5095 0.5061 16 1 4.8282 -7.8516 0.2630 17 6 6.9251 -8.0827 -0.1139 18 7 8.1404 -7.7665 0.2801 19 14 6.6829 -9.3029 -1.5073 20 1 6.7656 -8.5915 -2.8082 21 1 7.7408 -10.3432 -1.4439 22 1 5.3497 -9.9441 -1.3777 23 6 4.9203 -5.7434 2.0769 24 7 2.2891 -1.1328 -0.0054 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.9282 2.1193 -0.0006 29 1 4.4211 1.2962 -0.0003 30 1 5.6483 -1.0133 0.0891 31 1 4.7856 -2.1890 -0.9316 32 1 6.4160 -3.5072 0.7618 33 1 6.9894 -5.2509 3.9448 34 1 7.7250 -4.0754 2.8085 35 1 7.8934 -5.6497 1.0985 36 1 7.8191 -6.8301 2.4364 37 1 8.9104 -8.1673 -0.1528 38 1 4.1073 -5.5604 1.3743 39 1 4.5523 -6.2760 2.9539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014405452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = 72.413058 kcal Electronic energy + Delta-G solvation = -21384.175913 eV Core-core repulsion = 18136.564477 eV Total energy + Delta-G solvation = -3247.611436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17810 -39.29750 -37.11914 -33.84707 -33.59401 -31.82639 -30.46727 -29.70222 -28.99509 -27.15221 -25.72605 -24.35218 -21.37439 -21.10558 -20.04897 -19.70765 -19.39500 -17.08194 -16.96167 -16.50534 -15.68336 -15.41624 -14.94862 -14.60868 -14.18079 -13.84031 -13.76428 -13.45620 -13.23852 -12.86039 -12.58672 -12.46353 -12.33526 -11.90225 -11.80529 -11.72353 -10.90776 -10.88136 -10.62732 -10.50056 -10.29041 -10.08978 -9.91139 -9.66000 -9.46927 -9.16245 -8.64300 -8.55747 -8.42126 -6.77923 -5.70272 -3.01234 1.91613 2.50405 2.76487 3.06709 3.42029 3.47987 3.49619 3.72203 4.40354 4.53297 4.70244 4.83962 4.99238 5.16299 5.23266 5.29189 5.41036 5.49338 5.52862 5.56137 5.65100 5.78528 5.84154 5.89607 6.01725 6.27402 6.43787 6.54386 6.59821 6.64654 6.77348 6.99403 7.15597 7.56921 7.60366 7.78909 7.83004 8.01621 8.28157 8.69428 9.25177 9.85305 10.51982 11.42098 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.003863 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.349244 B = 7246.113943 C = 7776.252825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.046 3.954 4 C -0.267 4.267 5 C 0.088 3.912 6 C -0.062 4.062 7 C 0.515 3.485 8 O -0.536 6.536 9 N -0.706 5.706 10 C 0.130 3.870 11 H 0.088 0.912 12 C -0.153 4.153 13 C 0.175 3.825 14 N -0.604 5.604 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.125 3.875 24 N -0.260 5.260 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.251 0.749 38 H 0.043 0.957 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 18.823 -0.070 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.100 4.100 4 C -0.296 4.296 5 C -0.080 4.080 6 C -0.103 4.103 7 C 0.300 3.700 8 O -0.412 6.412 9 N -0.357 5.357 10 C 0.024 3.976 11 H 0.106 0.894 12 C -0.192 4.192 13 C 0.050 3.950 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.002 4.002 24 N -0.082 5.082 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.237 0.763 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.371 17.706 0.354 20.036 hybrid contribution 0.797 0.034 -1.063 1.328 sum -8.574 17.740 -0.708 19.716 Atomic orbital electron populations 1.21806 0.74509 1.04430 1.03082 1.48560 1.06608 1.03960 1.57109 1.22447 0.91203 0.93365 1.02980 1.21339 0.97055 0.94098 1.17157 1.21567 0.92800 0.93277 1.00337 1.20048 0.94753 0.96191 0.99341 1.20241 0.82527 0.81126 0.86087 1.90701 1.32254 1.71310 1.46983 1.45790 1.24224 1.34890 1.30778 1.22166 0.97558 0.89712 0.88165 0.89360 1.23213 0.95127 1.00043 1.00847 1.21176 0.88071 0.92117 0.93598 1.44480 1.00331 1.40047 1.48227 1.19073 0.93036 1.10007 1.13093 0.90564 1.24776 0.95262 1.00464 0.99909 1.69969 0.96865 1.47122 1.43044 0.86133 0.77030 0.80385 0.82469 1.21692 1.21840 1.20708 1.22027 0.92269 0.89937 0.95979 1.77510 1.01300 1.06835 1.22527 0.90956 0.89236 0.89730 0.81202 0.83576 0.87141 0.87188 0.76305 0.91137 0.91626 0.93438 0.94039 0.93859 0.93890 0.95681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.47 59.85 0.69 1.51 16 2 N -0.38 -4.80 4.01 -68.17 -0.27 -5.07 16 3 C 0.05 0.48 11.49 -17.23 -0.20 0.28 16 4 C -0.27 -3.17 10.72 -40.01 -0.43 -3.60 16 5 C 0.09 1.30 6.01 -82.41 -0.50 0.80 16 6 C -0.06 -0.81 6.28 -29.04 -0.18 -0.99 16 7 C 0.52 8.79 7.82 -10.99 -0.09 8.70 16 8 O -0.54 -11.17 15.21 5.55 0.08 -11.08 16 9 N -0.71 -11.88 5.19 -51.48 -0.27 -12.15 16 10 C 0.13 2.40 3.46 -65.52 -0.23 2.18 16 11 H 0.09 1.62 7.54 -51.93 -0.39 1.23 16 12 C -0.15 -2.77 6.53 -24.90 -0.16 -2.93 16 13 C 0.18 4.11 5.37 -3.06 -0.02 4.10 16 14 N -0.60 -15.44 3.40 -169.76 -0.58 -16.02 16 15 C -0.22 -6.31 10.26 -15.06 -0.15 -6.46 16 16 H 0.08 2.13 7.84 -52.48 -0.41 1.71 16 17 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 18 N -0.92 -26.74 10.36 55.49 0.57 -26.16 16 19 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.13 2.77 6.95 -2.26 -0.02 2.75 16 24 N -0.26 -4.33 11.94 33.67 0.40 -3.93 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.11 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.40 6.26 8.67 -40.81 -0.35 5.91 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 36 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -36.15 329.47 -7.21 -43.36 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.72 Total: 2.85 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.38 Total: 6.01 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.14 Total: -63.33 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.15 -7.21 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014405452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.771 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds