Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34942 * 126.03717 * 2 1 4 4 C 1.35316 * 107.74360 * 180.02562 * 3 2 1 5 5 C 1.39867 * 107.92462 * 359.97438 * 4 3 2 6 6 C 1.50695 * 125.90090 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47276 * 125.00423 * 6 5 4 8 8 O 1.21283 * 119.99815 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00357 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00433 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.91642 * 328.89951 * 10 9 7 12 12 C 1.55154 * 111.00786 * 205.00008 * 10 9 7 13 13 C 1.54327 * 103.10091 * 277.51449 * 12 10 9 14 14 N 1.47018 * 107.27369 * 337.71727 * 13 12 10 15 15 C 1.36936 * 125.64821 * 178.90006 * 14 13 12 16 16 H 1.08007 * 119.99563 * 174.87901 * 15 14 13 17 17 C 1.38809 * 120.00500 * 354.88350 * 15 14 13 18 18 N 1.31618 * 119.99478 * 7.06097 * 17 15 14 19 19 Si 1.86787 * 120.00238 * 187.05976 * 17 15 14 20 20 H 1.48508 * 109.47225 * 94.98730 * 19 17 15 21 21 H 1.48503 * 109.47485 * 214.98421 * 19 17 15 22 22 H 1.48503 * 109.47359 * 334.98783 * 19 17 15 23 23 C 1.47431 * 108.70227 * 358.94151 * 14 13 12 24 24 N 1.30837 * 108.19978 * 0.26351 * 5 4 3 25 25 H 1.08992 * 109.47207 * 90.00191 * 1 2 3 26 26 H 1.09004 * 109.47055 * 210.00422 * 1 2 3 27 27 H 1.08996 * 109.47081 * 329.99565 * 1 2 3 28 28 H 1.08001 * 126.13062 * 359.96344 * 3 2 1 29 29 H 1.08005 * 126.03677 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47541 * 4.99695 * 6 5 4 31 31 H 1.09004 * 109.47299 * 245.00084 * 6 5 4 32 32 H 0.97012 * 119.99893 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.72561 * 159.06597 * 12 10 9 34 34 H 1.09000 * 110.72415 * 35.96443 * 12 10 9 35 35 H 1.09001 * 109.87982 * 97.13772 * 13 12 10 36 36 H 1.09001 * 109.88219 * 218.30077 * 13 12 10 37 37 H 0.97002 * 120.00252 * 179.97438 * 18 17 15 38 38 H 1.08993 * 110.36520 * 142.96534 * 23 14 13 39 39 H 1.09000 * 110.36458 * 265.28812 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 3.5346 -0.7322 -0.0003 6 6 4.7496 -1.6237 -0.0003 7 6 4.6725 -2.5778 1.1637 8 8 3.7246 -2.5374 1.9191 9 7 5.6575 -3.4752 1.3658 10 6 5.5829 -4.4023 2.4976 11 1 5.0564 -3.9493 3.3377 12 6 6.9975 -4.8794 2.9200 13 6 7.2918 -6.0236 1.9270 14 7 5.9982 -6.5102 1.4258 15 6 5.8234 -7.5095 0.5061 16 1 4.8282 -7.8516 0.2630 17 6 6.9251 -8.0827 -0.1139 18 7 8.1404 -7.7665 0.2801 19 14 6.6829 -9.3029 -1.5073 20 1 6.7656 -8.5915 -2.8082 21 1 7.7408 -10.3432 -1.4439 22 1 5.3497 -9.9441 -1.3777 23 6 4.9203 -5.7434 2.0769 24 7 2.2891 -1.1328 -0.0054 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.9282 2.1193 -0.0006 29 1 4.4211 1.2962 -0.0003 30 1 5.6483 -1.0133 0.0891 31 1 4.7856 -2.1890 -0.9316 32 1 6.4160 -3.5072 0.7618 33 1 6.9894 -5.2509 3.9448 34 1 7.7250 -4.0754 2.8085 35 1 7.8934 -5.6497 1.0985 36 1 7.8191 -6.8301 2.4364 37 1 8.9104 -8.1673 -0.1528 38 1 4.1073 -5.5604 1.3743 39 1 4.5523 -6.2760 2.9539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014405452.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = 46.221704 kcal Electronic energy + Delta-G solvation = -21385.311655 eV Core-core repulsion = 18136.564477 eV Total energy + Delta-G solvation = -3248.747178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08441 -40.71775 -38.79825 -35.36130 -34.73501 -33.61742 -31.52881 -30.96767 -30.47359 -28.82728 -26.77218 -26.19500 -22.70048 -21.98270 -21.89553 -21.22234 -20.48364 -18.92308 -17.97411 -17.82270 -17.16520 -16.63848 -16.41304 -16.06720 -15.65574 -15.45392 -14.87514 -14.63964 -14.48700 -14.04304 -13.86138 -13.68037 -13.55790 -13.41215 -13.11817 -12.90623 -12.81552 -12.80134 -12.24387 -12.05477 -12.00463 -11.83370 -11.59055 -11.45014 -10.82646 -10.68890 -10.15751 -9.98673 -9.41279 -8.85263 -7.85856 -5.18829 1.05098 1.46193 1.47005 1.56127 1.74059 1.74407 1.82824 2.45524 2.49625 3.32693 3.57879 3.69061 3.80886 3.95107 4.04562 4.08963 4.23169 4.34490 4.42471 4.44027 4.57636 4.68091 4.69776 4.76717 4.86826 4.91054 4.94264 5.02045 5.06325 5.19144 5.45081 5.63363 5.70370 5.73556 5.78535 6.20856 6.27316 6.68453 6.87171 7.12512 7.36622 7.77458 8.42541 9.24517 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.003863 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.349244 B = 7246.113943 C = 7776.252825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.388 5.388 3 C 0.056 3.944 4 C -0.282 4.282 5 C 0.066 3.934 6 C -0.055 4.055 7 C 0.514 3.486 8 O -0.576 6.576 9 N -0.702 5.702 10 C 0.143 3.857 11 H 0.097 0.903 12 C -0.132 4.132 13 C 0.183 3.817 14 N -0.620 5.620 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.055 4.055 18 N -0.943 5.943 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.276 1.276 23 C 0.123 3.877 24 N -0.326 5.326 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.217 0.783 29 H 0.173 0.827 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.410 0.590 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.026 0.974 36 H 0.007 0.993 37 H 0.249 0.751 38 H 0.023 0.977 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 21.127 -0.403 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.171 5.171 3 C -0.090 4.090 4 C -0.312 4.312 5 C -0.101 4.101 6 C -0.096 4.096 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.353 5.353 10 C 0.037 3.963 11 H 0.115 0.885 12 C -0.171 4.171 13 C 0.058 3.942 14 N -0.347 5.347 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.591 5.591 19 Si 0.802 3.198 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.201 1.201 23 C -0.004 4.004 24 N -0.150 5.150 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.234 0.766 29 H 0.190 0.810 30 H 0.168 0.832 31 H 0.134 0.866 32 H 0.246 0.754 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.449 20.022 0.017 22.140 hybrid contribution 0.725 -0.664 -0.948 1.366 sum -8.725 19.358 -0.931 21.254 Atomic orbital electron populations 1.22122 0.72563 1.05470 1.04402 1.48914 1.07913 1.03676 1.56594 1.23224 0.90644 0.94701 1.00438 1.21743 0.98800 0.93077 1.17533 1.21931 0.92606 0.94926 1.00598 1.20129 0.96252 0.95826 0.97442 1.20916 0.81443 0.81071 0.86433 1.90679 1.33699 1.72457 1.48720 1.45776 1.24626 1.34417 1.30498 1.21950 0.97313 0.88182 0.88894 0.88477 1.23066 0.95340 0.98661 1.00004 1.20986 0.86794 0.92689 0.93691 1.44702 1.01977 1.39918 1.48116 1.19332 0.92976 1.11040 1.14067 0.91229 1.25513 0.95036 1.02373 1.01978 1.70152 0.97265 1.47974 1.43748 0.85147 0.76971 0.78193 0.79521 1.21175 1.21825 1.20092 1.22122 0.91324 0.91799 0.95160 1.77392 1.02777 1.09740 1.25068 0.89495 0.90748 0.86140 0.76618 0.80988 0.83215 0.86640 0.75432 0.89449 0.88471 0.95621 0.97504 0.94211 0.95883 0.95577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 11.47 127.77 1.47 2.84 16 2 N -0.39 -9.30 4.01 -369.58 -1.48 -10.78 16 3 C 0.06 1.01 11.49 83.54 0.96 1.97 16 4 C -0.28 -6.03 10.72 21.99 0.24 -5.80 16 5 C 0.07 1.88 6.01 43.10 0.26 2.14 16 6 C -0.06 -1.39 6.28 29.10 0.18 -1.21 16 7 C 0.51 17.23 7.82 87.66 0.69 17.92 16 8 O -0.58 -24.15 15.21 -3.04 -0.05 -24.20 16 9 N -0.70 -22.96 5.19 -435.18 -2.26 -25.22 16 10 C 0.14 5.17 3.46 46.55 0.16 5.33 16 11 H 0.10 3.43 7.54 -2.38 -0.02 3.41 16 12 C -0.13 -4.55 6.53 31.78 0.21 -4.34 16 13 C 0.18 8.68 5.37 86.73 0.47 9.14 16 14 N -0.62 -32.29 3.40 -691.01 -2.35 -34.64 16 15 C -0.25 -14.10 10.26 84.03 0.86 -13.24 16 16 H 0.07 3.98 7.84 -2.91 -0.02 3.96 16 17 C -0.06 -3.15 5.48 84.86 0.46 -2.69 16 18 N -0.94 -55.51 10.36 21.65 0.22 -55.28 16 19 Si 0.97 46.19 29.56 68.60 2.03 48.21 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C 0.12 5.50 6.95 87.02 0.60 6.10 16 24 N -0.33 -10.91 11.94 -47.39 -0.57 -11.48 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.15 2.46 8.12 -2.38 -0.02 2.44 16 31 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.41 12.24 8.67 -92.70 -0.80 11.43 16 33 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.03 1.31 7.30 -2.39 -0.02 1.30 16 36 H 0.01 0.36 7.61 -2.39 -0.02 0.34 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -81.24 329.47 2.36 -78.89 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.25 Total: 16.33 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.56 Total: 18.17 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -6.43 Total: -137.41 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.24 2.36 -78.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014405452.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.111 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds