Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00485 * 2 1 4 4 O 1.21283 * 120.00192 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99890 * 359.97438 * 3 2 1 6 6 C 1.50697 * 109.47020 * 179.97438 * 5 3 2 7 7 C 1.39871 * 125.89550 * 124.71832 * 6 5 3 8 8 C 1.35320 * 107.91630 * 179.86314 * 7 6 5 9 9 N 1.34937 * 107.74687 * 0.39380 * 8 7 6 10 10 C 1.46510 * 126.03706 * 179.75379 * 9 8 7 11 11 N 1.30832 * 125.90070 * 305.02193 * 6 5 3 12 12 C 1.46508 * 119.99536 * 179.97438 * 2 1 3 13 13 C 1.53496 * 114.20706 * 60.00133 * 12 2 1 14 14 N 1.47062 * 87.98485 * 220.14769 * 13 12 2 15 15 C 1.36939 * 136.05593 * 207.08750 * 14 13 12 16 16 H 1.08008 * 119.99868 * 7.82597 * 15 14 13 17 17 C 1.38808 * 120.00203 * 187.82575 * 15 14 13 18 18 N 1.31618 * 119.99998 * 195.17052 * 17 15 14 19 19 Si 1.86797 * 119.99840 * 15.16580 * 17 15 14 20 20 H 1.48503 * 109.47450 * 270.00422 * 19 17 15 21 21 H 1.48503 * 109.47360 * 30.00092 * 19 17 15 22 22 H 1.48498 * 109.47360 * 150.00270 * 19 17 15 23 23 C 1.47059 * 87.88616 * 27.34176 * 14 13 12 24 24 H 1.08994 * 109.47345 * 270.00261 * 1 2 3 25 25 H 1.09001 * 109.46733 * 30.00327 * 1 2 3 26 26 H 1.08996 * 109.47534 * 149.99922 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00629 * 5 3 2 28 28 H 1.09000 * 109.47089 * 60.00029 * 5 3 2 29 29 H 1.08002 * 126.03917 * 359.97438 * 7 6 5 30 30 H 1.08001 * 126.12467 * 180.14612 * 8 7 6 31 31 H 1.08999 * 109.46568 * 269.97228 * 10 9 8 32 32 H 1.08995 * 109.47041 * 29.97239 * 10 9 8 33 33 H 1.08997 * 109.47115 * 149.97513 * 10 9 8 34 34 H 1.09001 * 113.27729 * 193.06987 * 12 2 1 35 35 H 1.09008 * 113.46447 * 105.36204 * 13 12 2 36 36 H 1.08996 * 113.51824 * 334.94014 * 13 12 2 37 37 H 0.96995 * 120.00365 * 354.90363 * 18 17 15 38 38 H 1.08997 * 113.47135 * 87.43718 * 23 14 13 39 39 H 1.09007 * 113.47198 * 217.88025 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3649 3.6176 0.0002 7 6 2.4081 4.6603 -0.9311 8 6 3.4232 5.4856 -0.5853 9 7 4.0073 4.9783 0.5203 10 6 5.1525 5.5527 1.2309 11 7 3.3251 3.8054 0.8688 12 6 2.1974 -1.2689 0.0006 13 6 1.9058 -2.1644 -1.2115 14 7 1.9166 -3.3164 -0.2974 15 6 2.1881 -4.6546 -0.4008 16 1 2.5983 -5.0532 -1.3170 17 6 1.9361 -5.4989 0.6718 18 7 2.4597 -6.7062 0.6962 19 14 0.8540 -4.9215 2.0807 20 1 1.6949 -4.2660 3.1144 21 1 -0.1480 -3.9517 1.5700 22 1 0.1547 -6.0875 2.6778 23 6 1.5013 -2.4000 0.7751 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7586 2.5303 0.8891 29 1 1.7469 4.7856 -1.7758 30 1 3.7162 6.3865 -1.1038 31 1 6.0764 5.1476 0.8182 32 1 5.1466 6.6363 1.1135 33 1 5.0865 5.3015 2.2895 34 1 3.2575 -1.1542 0.2269 35 1 2.7144 -2.1825 -1.9423 36 1 0.9322 -1.9792 -1.6650 37 1 2.9601 -7.0333 -0.0676 38 1 0.4207 -2.2762 0.8462 39 1 1.9652 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042707995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 120.474103 kcal Electronic energy + Delta-G solvation = -21361.227382 eV Core-core repulsion = 18115.700030 eV Total energy + Delta-G solvation = -3245.527352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30054 -39.88821 -37.98040 -34.59862 -33.94926 -32.26756 -30.63089 -29.80902 -27.91892 -26.73950 -25.88032 -25.25923 -22.78420 -21.28105 -20.54130 -19.40654 -18.62328 -17.51362 -17.15106 -16.83692 -16.11669 -15.67815 -15.38937 -14.93645 -14.42629 -14.00413 -13.77341 -13.50897 -13.30157 -13.04884 -12.88707 -12.73808 -12.57066 -12.18248 -12.09734 -11.92998 -11.84745 -11.54624 -11.14922 -10.62969 -10.60634 -10.16950 -9.66740 -9.59855 -9.28376 -9.22216 -8.71125 -8.65302 -8.23406 -7.18558 -6.31043 -3.23147 1.81452 2.40274 2.62668 2.84605 3.26335 3.42917 3.47977 3.63000 4.28673 4.57188 4.60071 4.67725 4.77112 4.91591 4.93336 5.02103 5.14680 5.17806 5.25842 5.31003 5.39301 5.51874 5.58920 5.69075 5.71390 5.86458 5.88077 5.97563 6.19129 6.32945 6.41874 6.51656 6.55541 6.89524 7.04235 7.10751 7.63749 7.67999 8.24319 8.42058 8.97429 9.50219 10.35791 11.19218 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.003558 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.223231 B = 7868.115414 C = 8010.339266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.604 5.604 3 C 0.515 3.485 4 O -0.526 6.526 5 C -0.058 4.058 6 C 0.084 3.916 7 C -0.266 4.266 8 C 0.047 3.953 9 N -0.379 5.379 10 C 0.103 3.897 11 N -0.261 5.261 12 C 0.104 3.896 13 C 0.107 3.893 14 N -0.618 5.618 15 C -0.304 4.304 16 H 0.083 0.917 17 C -0.023 4.023 18 N -0.930 5.930 19 Si 1.063 2.937 20 H -0.293 1.293 21 H -0.282 1.282 22 H -0.295 1.295 23 C 0.093 3.907 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 27.553 -1.685 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.337 5.337 3 C 0.301 3.699 4 O -0.401 6.401 5 C -0.099 4.099 6 C -0.084 4.084 7 C -0.296 4.296 8 C -0.098 4.098 9 N -0.161 5.161 10 C -0.039 4.039 11 N -0.083 5.083 12 C 0.000 4.000 13 C -0.020 4.020 14 N -0.346 5.346 15 C -0.431 4.431 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.572 5.572 19 Si 0.894 3.106 20 H -0.220 1.220 21 H -0.208 1.208 22 H -0.222 1.222 23 C -0.033 4.033 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.189 0.811 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.652 26.463 0.886 26.610 hybrid contribution 0.063 0.727 -2.380 2.489 sum -2.589 27.190 -1.494 27.353 Atomic orbital electron populations 1.21849 0.79838 1.03302 1.02053 1.47882 1.06823 1.05904 1.73137 1.20343 0.88149 0.84815 0.76594 1.90731 1.13768 1.87053 1.48535 1.20087 0.95988 0.88572 1.05295 1.21582 0.95918 0.96264 0.94616 1.21336 1.04877 0.98412 1.04968 1.22464 0.95909 1.00495 0.90966 1.48554 1.26164 1.19227 1.22157 1.21825 0.85725 0.97984 0.98327 1.77468 1.07958 0.99333 1.23575 1.23495 0.97790 0.79765 0.98978 1.22785 0.98567 0.86757 0.93940 1.45881 1.79677 1.03835 1.05167 1.20109 1.39880 0.79706 1.03373 0.89906 1.25800 1.00850 0.94735 1.00827 1.70895 1.36354 1.18692 1.31256 0.83767 0.76703 0.74582 0.75533 1.22018 1.20843 1.22199 1.23106 0.97631 0.88135 0.94477 0.92383 0.91151 0.90307 0.87043 0.87383 0.83539 0.81116 0.90764 0.89658 0.89330 0.85894 0.93373 0.94492 0.92779 0.93261 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.92 59.85 0.53 1.34 16 2 N -0.60 -9.25 3.12 -173.56 -0.54 -9.79 16 3 C 0.51 8.12 7.66 -10.99 -0.08 8.04 16 4 O -0.53 -10.69 15.07 5.55 0.08 -10.60 16 5 C -0.06 -0.65 4.83 -29.04 -0.14 -0.79 16 6 C 0.08 1.12 6.02 -82.41 -0.50 0.62 16 7 C -0.27 -2.87 10.72 -40.01 -0.43 -3.30 16 8 C 0.05 0.45 11.49 -17.23 -0.20 0.25 16 9 N -0.38 -4.40 4.01 -68.16 -0.27 -4.67 16 10 C 0.10 0.73 11.47 59.85 0.69 1.42 16 11 N -0.26 -4.00 11.92 33.67 0.40 -3.60 16 12 C 0.10 2.00 4.57 -67.68 -0.31 1.69 16 13 C 0.11 2.21 8.24 -8.52 -0.07 2.14 16 14 N -0.62 -15.59 3.62 -184.65 -0.67 -16.26 16 15 C -0.30 -8.95 11.03 -15.06 -0.17 -9.11 16 16 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 17 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 18 N -0.93 -29.74 13.70 55.49 0.76 -28.98 16 19 Si 1.06 26.84 25.50 -169.99 -4.34 22.50 16 20 H -0.29 -7.18 6.97 56.52 0.39 -6.79 16 21 H -0.28 -6.48 5.66 56.52 0.32 -6.16 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 C 0.09 2.01 5.03 -8.39 -0.04 1.96 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 26 H 0.08 0.95 6.18 -51.93 -0.32 0.63 16 27 H 0.11 0.88 7.38 -51.93 -0.38 0.50 16 28 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 29 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.12 2.62 7.29 -51.93 -0.38 2.24 16 35 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.04 0.70 6.97 -51.93 -0.36 0.34 16 37 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 38 H 0.05 0.99 5.45 -51.93 -0.28 0.71 16 39 H 0.06 1.25 6.22 -51.93 -0.32 0.92 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -38.82 319.82 -5.99 -44.82 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.43 Total: -1.71 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.81 Total: 3.48 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.32 Total: -63.30 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.34 Total: 22.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -38.82 -5.99 -44.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042707995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.293 kcal (2) G-P(sol) polarization free energy of solvation -38.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds