Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00485 * 2 1 4 4 O 1.21283 * 120.00192 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99890 * 359.97438 * 3 2 1 6 6 C 1.50697 * 109.47020 * 179.97438 * 5 3 2 7 7 C 1.39871 * 125.89550 * 124.71832 * 6 5 3 8 8 C 1.35320 * 107.91630 * 179.86314 * 7 6 5 9 9 N 1.34937 * 107.74687 * 0.39380 * 8 7 6 10 10 C 1.46510 * 126.03706 * 179.75379 * 9 8 7 11 11 N 1.30832 * 125.90070 * 305.02193 * 6 5 3 12 12 C 1.46508 * 119.99536 * 179.97438 * 2 1 3 13 13 C 1.53496 * 114.20706 * 60.00133 * 12 2 1 14 14 N 1.47062 * 87.98485 * 220.14769 * 13 12 2 15 15 C 1.36939 * 136.05593 * 207.08750 * 14 13 12 16 16 H 1.08008 * 119.99868 * 7.82597 * 15 14 13 17 17 C 1.38808 * 120.00203 * 187.82575 * 15 14 13 18 18 N 1.31618 * 119.99998 * 195.17052 * 17 15 14 19 19 Si 1.86797 * 119.99840 * 15.16580 * 17 15 14 20 20 H 1.48503 * 109.47450 * 270.00422 * 19 17 15 21 21 H 1.48503 * 109.47360 * 30.00092 * 19 17 15 22 22 H 1.48498 * 109.47360 * 150.00270 * 19 17 15 23 23 C 1.47059 * 87.88616 * 27.34176 * 14 13 12 24 24 H 1.08994 * 109.47345 * 270.00261 * 1 2 3 25 25 H 1.09001 * 109.46733 * 30.00327 * 1 2 3 26 26 H 1.08996 * 109.47534 * 149.99922 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00629 * 5 3 2 28 28 H 1.09000 * 109.47089 * 60.00029 * 5 3 2 29 29 H 1.08002 * 126.03917 * 359.97438 * 7 6 5 30 30 H 1.08001 * 126.12467 * 180.14612 * 8 7 6 31 31 H 1.08999 * 109.46568 * 269.97228 * 10 9 8 32 32 H 1.08995 * 109.47041 * 29.97239 * 10 9 8 33 33 H 1.08997 * 109.47115 * 149.97513 * 10 9 8 34 34 H 1.09001 * 113.27729 * 193.06987 * 12 2 1 35 35 H 1.09008 * 113.46447 * 105.36204 * 13 12 2 36 36 H 1.08996 * 113.51824 * 334.94014 * 13 12 2 37 37 H 0.96995 * 120.00365 * 354.90363 * 18 17 15 38 38 H 1.08997 * 113.47135 * 87.43718 * 23 14 13 39 39 H 1.09007 * 113.47198 * 217.88025 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3649 3.6176 0.0002 7 6 2.4081 4.6603 -0.9311 8 6 3.4232 5.4856 -0.5853 9 7 4.0073 4.9783 0.5203 10 6 5.1525 5.5527 1.2309 11 7 3.3251 3.8054 0.8688 12 6 2.1974 -1.2689 0.0006 13 6 1.9058 -2.1644 -1.2115 14 7 1.9166 -3.3164 -0.2974 15 6 2.1881 -4.6546 -0.4008 16 1 2.5983 -5.0532 -1.3170 17 6 1.9361 -5.4989 0.6718 18 7 2.4597 -6.7062 0.6962 19 14 0.8540 -4.9215 2.0807 20 1 1.6949 -4.2660 3.1144 21 1 -0.1480 -3.9517 1.5700 22 1 0.1547 -6.0875 2.6778 23 6 1.5013 -2.4000 0.7751 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7586 2.5303 0.8891 29 1 1.7469 4.7856 -1.7758 30 1 3.7162 6.3865 -1.1038 31 1 6.0764 5.1476 0.8182 32 1 5.1466 6.6363 1.1135 33 1 5.0865 5.3015 2.2895 34 1 3.2575 -1.1542 0.2269 35 1 2.7144 -2.1825 -1.9423 36 1 0.9322 -1.9792 -1.6650 37 1 2.9601 -7.0333 -0.0676 38 1 0.4207 -2.2762 0.8462 39 1 1.9652 -2.6188 1.7370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042707995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = 90.582852 kcal Electronic energy + Delta-G solvation = -21362.523564 eV Core-core repulsion = 18115.700030 eV Total energy + Delta-G solvation = -3246.823534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11059 -41.25662 -39.51059 -35.98978 -34.78606 -34.36599 -31.48542 -30.74039 -29.63092 -27.82466 -26.98441 -26.71294 -24.48748 -22.08091 -21.90353 -20.77952 -19.78313 -19.55673 -18.25596 -17.78211 -17.45786 -16.78090 -16.76820 -16.13546 -15.80155 -15.39343 -15.21820 -14.69663 -14.53676 -14.01096 -13.87522 -13.71139 -13.50707 -13.40952 -13.30490 -13.13911 -13.08200 -12.89233 -12.82291 -12.51420 -11.96978 -11.53554 -11.46078 -11.29544 -10.93317 -10.78581 -10.15472 -9.55418 -9.40857 -9.28740 -8.67153 -5.51832 1.04744 1.39399 1.50310 1.65074 1.68307 1.71010 1.78709 2.14930 2.53659 3.03719 3.13113 3.53693 3.57124 3.80121 3.95221 4.10563 4.18751 4.29424 4.34610 4.42080 4.47130 4.54151 4.57164 4.59908 4.67303 4.68148 4.79764 4.88310 4.95006 5.04946 5.11079 5.13934 5.18878 5.60643 5.75376 5.90886 6.26220 6.47905 6.65096 6.87212 7.24262 7.28203 8.21415 8.84833 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.003558 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.223231 B = 7868.115414 C = 8010.339266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.601 5.601 3 C 0.510 3.490 4 O -0.581 6.581 5 C -0.048 4.048 6 C 0.063 3.937 7 C -0.282 4.282 8 C 0.053 3.947 9 N -0.389 5.389 10 C 0.095 3.905 11 N -0.325 5.325 12 C 0.124 3.876 13 C 0.111 3.889 14 N -0.651 5.651 15 C -0.295 4.295 16 H 0.049 0.951 17 C -0.083 4.083 18 N -0.966 5.966 19 Si 1.102 2.898 20 H -0.284 1.284 21 H -0.241 1.241 22 H -0.299 1.299 23 C 0.094 3.906 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.133 0.867 29 H 0.173 0.827 30 H 0.214 0.786 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 31.375 -1.854 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.333 5.333 3 C 0.299 3.701 4 O -0.460 6.460 5 C -0.088 4.088 6 C -0.104 4.104 7 C -0.311 4.311 8 C -0.093 4.093 9 N -0.172 5.172 10 C -0.046 4.046 11 N -0.148 5.148 12 C 0.018 3.982 13 C -0.015 4.015 14 N -0.380 5.380 15 C -0.422 4.422 16 H 0.067 0.933 17 C -0.275 4.275 18 N -0.611 5.611 19 Si 0.926 3.074 20 H -0.211 1.211 21 H -0.165 1.165 22 H -0.226 1.226 23 C -0.031 4.031 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.150 0.850 29 H 0.190 0.810 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.295 30.351 0.690 30.818 hybrid contribution 0.976 -0.334 -2.437 2.647 sum -4.319 30.017 -1.747 30.376 Atomic orbital electron populations 1.22239 0.76600 1.05299 1.03844 1.47884 1.08584 1.04129 1.72720 1.21209 0.87759 0.86109 0.74975 1.90714 1.16511 1.87848 1.50930 1.20214 0.95510 0.84833 1.08287 1.22059 0.95968 0.97355 0.94979 1.21755 1.05905 0.98006 1.05445 1.23218 0.94866 1.01256 0.89964 1.48899 1.26727 1.18556 1.23013 1.22112 0.84607 1.00135 0.97699 1.77361 1.09840 1.01763 1.25878 1.22739 0.96655 0.81564 0.97237 1.22939 0.99662 0.84998 0.93909 1.45850 1.80548 1.03215 1.08359 1.19936 1.38323 0.82068 1.01920 0.93314 1.27208 1.01906 0.94416 1.03935 1.71013 1.38466 1.20441 1.31139 0.83353 0.76041 0.75065 0.72981 1.21133 1.16511 1.22629 1.23287 0.99185 0.87555 0.93093 0.90699 0.86740 0.90818 0.82996 0.84964 0.80952 0.76937 0.90810 0.85781 0.89992 0.88862 0.94531 0.91224 0.94403 0.90177 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 8.92 127.77 1.14 2.19 16 2 N -0.60 -16.68 3.12 -821.40 -2.56 -19.24 16 3 C 0.51 15.10 7.66 87.66 0.67 15.77 16 4 O -0.58 -23.78 15.07 -3.04 -0.05 -23.82 16 5 C -0.05 -0.90 4.83 29.10 0.14 -0.76 16 6 C 0.06 1.55 6.02 43.10 0.26 1.81 16 7 C -0.28 -5.23 10.72 21.99 0.24 -4.99 16 8 C 0.05 0.86 11.49 83.54 0.96 1.82 16 9 N -0.39 -8.48 4.01 -369.56 -1.48 -9.96 16 10 C 0.09 1.23 11.47 127.77 1.47 2.69 16 11 N -0.33 -9.76 11.92 -47.39 -0.56 -10.33 16 12 C 0.12 4.64 4.57 45.55 0.21 4.85 16 13 C 0.11 4.47 8.24 83.17 0.69 5.15 16 14 N -0.65 -32.60 3.62 -738.12 -2.67 -35.28 16 15 C -0.30 -17.76 11.03 84.03 0.93 -16.84 16 16 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 17 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 18 N -0.97 -63.94 13.70 21.65 0.30 -63.64 16 19 Si 1.10 53.49 25.50 68.60 1.75 55.24 16 20 H -0.28 -13.34 6.97 99.48 0.69 -12.64 16 21 H -0.24 -9.96 5.66 99.48 0.56 -9.39 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 23 C 0.09 3.87 5.03 83.26 0.42 4.29 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.11 0.98 6.44 -2.39 -0.02 0.96 16 26 H 0.07 1.38 6.18 -2.39 -0.01 1.37 16 27 H 0.15 1.56 7.38 -2.39 -0.02 1.54 16 28 H 0.13 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.21 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 4.08 7.29 -2.39 -0.02 4.06 16 35 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.07 2.40 6.97 -2.39 -0.02 2.39 16 37 H 0.25 16.42 8.73 -92.71 -0.81 15.62 16 38 H 0.08 2.85 5.45 -2.39 -0.01 2.83 16 39 H 0.04 1.85 6.22 -2.38 -0.01 1.84 16 Total: -1.00 -90.64 319.82 3.16 -87.48 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 0.86 Total: 8.16 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 7.58 Total: 11.38 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -6.98 Total: -138.44 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.75 Total: 55.24 kcal Total: -90.64 3.16 -87.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042707995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.064 kcal (2) G-P(sol) polarization free energy of solvation -90.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds