Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34262 * 125.75125 * 2 1 4 4 C 1.38044 * 107.41197 * 180.18229 * 3 2 1 5 5 C 1.47426 * 126.41384 * 179.87282 * 4 3 2 6 6 O 1.21606 * 120.00413 * 179.68577 * 5 4 3 7 7 N 1.34777 * 119.99972 * 359.68894 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47030 * 180.02562 * 9 8 7 11 11 C 1.36943 * 119.99943 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99502 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00174 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47400 * 90.00391 * 15 13 11 17 17 H 1.48509 * 109.47316 * 210.00412 * 15 13 11 18 18 H 1.48502 * 109.47297 * 330.00022 * 15 13 11 19 19 C 1.41290 * 107.17210 * 359.60625 * 4 3 2 20 20 C 1.50704 * 125.98935 * 180.23987 * 19 4 3 21 21 C 1.52998 * 117.49677 * 188.62414 * 20 19 4 22 22 C 1.52995 * 59.99974 * 252.51105 * 21 20 19 23 23 N 1.30447 * 108.02205 * 0.24241 * 19 4 3 24 24 H 1.08994 * 109.47305 * 270.27338 * 1 2 3 25 25 H 1.09001 * 109.47191 * 30.27199 * 1 2 3 26 26 H 1.09000 * 109.47124 * 150.26968 * 1 2 3 27 27 H 1.07999 * 126.29626 * 0.03257 * 3 2 1 28 28 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 30 30 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 31 31 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 32 32 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 33 33 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 34 34 H 0.97000 * 119.99481 * 180.02562 * 14 13 11 35 35 H 1.08999 * 115.54749 * 334.33109 * 20 19 4 36 36 H 1.09005 * 117.50401 * 0.02562 * 21 20 19 37 37 H 1.09004 * 117.49507 * 145.02147 * 21 20 19 38 38 H 1.09004 * 117.50369 * 252.51036 * 22 21 20 39 39 H 1.09005 * 117.51912 * 107.48536 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0042 5 6 4.7638 1.5061 -0.0084 6 8 5.8682 0.9970 -0.0061 7 7 4.6405 2.8482 -0.0146 8 6 5.8370 3.6936 -0.0193 9 6 5.4210 5.1660 -0.0267 10 7 6.6174 6.0114 -0.0320 11 6 6.4922 7.3751 -0.0385 12 1 5.5113 7.8272 -0.0401 13 6 7.6257 8.1762 -0.0430 14 7 8.8210 7.6250 -0.0415 15 14 7.4549 10.0363 -0.0525 16 1 7.4101 10.5365 1.3449 17 1 8.6168 10.6365 -0.7562 18 1 6.2020 10.4147 -0.7541 19 6 3.5311 -0.7573 0.0025 20 6 4.7322 -1.6675 0.0062 21 6 4.4846 -3.1645 -0.1901 22 6 4.8859 -2.6295 1.1859 23 7 2.2826 -1.1356 0.0050 24 1 -0.3633 0.0049 1.0276 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5096 27 1 1.9166 2.1170 0.0005 28 1 3.7596 3.2543 -0.0168 29 1 6.4307 3.4879 0.8714 30 1 6.4298 3.4795 -0.9086 31 1 4.8275 5.3714 -0.9176 32 1 4.8279 5.3805 0.8624 33 1 7.4983 5.6053 -0.0302 34 1 9.6132 8.1848 -0.0443 35 1 5.6419 -1.2470 -0.4223 36 1 3.4531 -3.4911 -0.3223 37 1 5.2317 -3.7292 -0.7479 38 1 5.8970 -2.8421 1.5335 39 1 4.1186 -2.6037 1.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128334844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 77.705033 kcal Electronic energy + Delta-G solvation = -20584.357568 eV Core-core repulsion = 17336.975609 eV Total energy + Delta-G solvation = -3247.381958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64554 -38.97129 -37.24588 -35.57901 -33.78325 -33.28480 -31.43101 -30.41547 -27.87941 -27.25268 -24.11938 -23.15438 -22.56808 -22.30211 -21.46275 -20.09560 -19.41388 -17.88559 -17.12613 -16.25404 -15.98235 -15.51578 -15.31378 -15.08391 -14.78827 -14.51012 -13.90814 -13.71728 -13.35451 -13.16904 -13.05888 -12.94256 -12.81310 -12.00725 -11.63608 -11.38899 -11.22021 -11.08763 -10.95786 -10.81141 -10.78455 -10.48506 -10.11247 -9.82433 -9.60551 -9.40365 -8.98400 -8.88948 -8.62825 -6.98184 -5.78691 -3.09351 1.31608 1.96418 2.06526 3.39870 3.42591 3.48437 3.49726 3.50330 3.89826 4.06027 4.28660 4.50906 4.59065 4.70810 4.77418 4.92617 4.96696 5.00310 5.18846 5.29463 5.50789 5.51582 5.55034 5.62963 5.74139 5.82967 5.99627 6.03778 6.13919 6.19127 6.29234 6.52435 6.55939 6.73501 6.81485 7.36469 7.66136 7.75493 8.38883 8.48047 9.50233 10.05539 10.40240 11.43924 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002965 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.180347 B = 9442.157695 C =10350.006505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 C 0.098 3.902 4 C -0.276 4.276 5 C 0.590 3.410 6 O -0.540 6.540 7 N -0.723 5.723 8 C 0.113 3.887 9 C 0.145 3.855 10 N -0.730 5.730 11 C -0.244 4.244 12 H 0.071 0.929 13 C -0.012 4.012 14 N -0.930 5.930 15 Si 0.910 3.090 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.163 3.837 20 C -0.081 4.081 21 C -0.170 4.170 22 C -0.159 4.159 23 N -0.302 5.302 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.185 0.815 28 H 0.394 0.606 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 -18.744 0.331 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.141 5.141 3 C -0.054 4.054 4 C -0.291 4.291 5 C 0.377 3.623 6 O -0.418 6.418 7 N -0.374 5.374 8 C -0.010 4.010 9 C 0.017 3.983 10 N -0.375 5.375 11 C -0.375 4.375 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.578 5.578 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.003 4.003 20 C -0.101 4.101 21 C -0.207 4.207 22 C -0.197 4.197 23 N -0.123 5.123 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.202 0.798 28 H 0.228 0.772 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.158 0.842 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.107 -19.906 0.317 26.911 hybrid contribution 0.113 2.049 0.026 2.052 sum -17.993 -17.857 0.343 25.353 Atomic orbital electron populations 1.21982 0.73509 1.04980 1.03844 1.48245 1.07015 1.03773 1.55053 1.23118 0.90401 0.93834 0.98013 1.20260 0.92688 0.93792 1.22408 1.17184 0.87581 0.81434 0.76075 1.90744 1.26780 1.73678 1.50585 1.45752 1.10182 1.05645 1.75779 1.21557 0.86637 0.90205 1.02642 1.20754 0.91691 0.87609 0.98280 1.42195 1.02802 1.02813 1.89663 1.19187 0.92726 0.82170 1.43403 0.91071 1.24779 0.95212 0.98154 1.02709 1.69673 0.96754 1.34213 1.57192 0.86154 0.76893 0.85354 0.77528 1.21646 1.21688 1.20737 1.21430 0.91923 0.91820 0.95165 1.20541 0.95423 0.89044 1.05085 1.23004 1.03009 0.94966 0.99740 1.22951 1.03012 1.02217 0.91548 1.77108 1.01207 1.07138 1.26835 0.90269 0.88967 0.88930 0.79832 0.77225 0.91225 0.91233 0.95881 0.95888 0.77961 0.93357 0.84155 0.88285 0.88287 0.87988 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.44 11.44 59.85 0.68 1.12 16 2 N -0.36 -3.40 3.98 -67.60 -0.27 -3.67 16 3 C 0.10 0.91 10.99 -16.56 -0.18 0.73 16 4 C -0.28 -3.62 6.13 -105.07 -0.64 -4.26 16 5 C 0.59 9.16 7.81 -12.52 -0.10 9.06 16 6 O -0.54 -10.22 15.00 5.27 0.08 -10.14 16 7 N -0.72 -10.15 5.55 -61.38 -0.34 -10.49 16 8 C 0.11 1.97 5.79 -4.04 -0.02 1.94 16 9 C 0.14 2.82 6.37 -4.04 -0.03 2.80 16 10 N -0.73 -18.57 5.60 -59.91 -0.34 -18.91 16 11 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 12 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 13 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 15 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.16 2.20 6.80 -82.02 -0.56 1.64 16 20 C -0.08 -1.02 5.65 -91.77 -0.52 -1.54 16 21 C -0.17 -1.71 10.14 -26.73 -0.27 -1.98 16 22 C -0.16 -1.68 10.23 -26.74 -0.27 -1.96 16 23 N -0.30 -3.73 12.08 33.90 0.41 -3.32 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.18 0.96 7.46 -52.49 -0.39 0.57 16 28 H 0.39 4.21 7.40 -40.82 -0.30 3.91 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.39 10.43 7.67 -40.82 -0.31 10.12 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.14 1.98 6.73 -51.93 -0.35 1.63 16 36 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -35.56 337.70 -7.36 -42.92 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.54 Total: 8.70 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.16 Total: 0.15 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.19 Total: -63.96 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.56 -7.36 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128334844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.623 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds