Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34262 * 125.75125 * 2 1 4 4 C 1.38044 * 107.41197 * 180.18229 * 3 2 1 5 5 C 1.47426 * 126.41384 * 179.87282 * 4 3 2 6 6 O 1.21606 * 120.00413 * 179.68577 * 5 4 3 7 7 N 1.34777 * 119.99972 * 359.68894 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47030 * 180.02562 * 9 8 7 11 11 C 1.36943 * 119.99943 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99502 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00174 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47400 * 90.00391 * 15 13 11 17 17 H 1.48509 * 109.47316 * 210.00412 * 15 13 11 18 18 H 1.48502 * 109.47297 * 330.00022 * 15 13 11 19 19 C 1.41290 * 107.17210 * 359.60625 * 4 3 2 20 20 C 1.50704 * 125.98935 * 180.23987 * 19 4 3 21 21 C 1.52998 * 117.49677 * 188.62414 * 20 19 4 22 22 C 1.52995 * 59.99974 * 252.51105 * 21 20 19 23 23 N 1.30447 * 108.02205 * 0.24241 * 19 4 3 24 24 H 1.08994 * 109.47305 * 270.27338 * 1 2 3 25 25 H 1.09001 * 109.47191 * 30.27199 * 1 2 3 26 26 H 1.09000 * 109.47124 * 150.26968 * 1 2 3 27 27 H 1.07999 * 126.29626 * 0.03257 * 3 2 1 28 28 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 30 30 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 31 31 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 32 32 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 33 33 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 34 34 H 0.97000 * 119.99481 * 180.02562 * 14 13 11 35 35 H 1.08999 * 115.54749 * 334.33109 * 20 19 4 36 36 H 1.09005 * 117.50401 * 0.02562 * 21 20 19 37 37 H 1.09004 * 117.49507 * 145.02147 * 21 20 19 38 38 H 1.09004 * 117.50369 * 252.51036 * 22 21 20 39 39 H 1.09005 * 117.51912 * 107.48536 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0042 5 6 4.7638 1.5061 -0.0084 6 8 5.8682 0.9970 -0.0061 7 7 4.6405 2.8482 -0.0146 8 6 5.8370 3.6936 -0.0193 9 6 5.4210 5.1660 -0.0267 10 7 6.6174 6.0114 -0.0320 11 6 6.4922 7.3751 -0.0385 12 1 5.5113 7.8272 -0.0401 13 6 7.6257 8.1762 -0.0430 14 7 8.8210 7.6250 -0.0415 15 14 7.4549 10.0363 -0.0525 16 1 7.4101 10.5365 1.3449 17 1 8.6168 10.6365 -0.7562 18 1 6.2020 10.4147 -0.7541 19 6 3.5311 -0.7573 0.0025 20 6 4.7322 -1.6675 0.0062 21 6 4.4846 -3.1645 -0.1901 22 6 4.8859 -2.6295 1.1859 23 7 2.2826 -1.1356 0.0050 24 1 -0.3633 0.0049 1.0276 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5096 27 1 1.9166 2.1170 0.0005 28 1 3.7596 3.2543 -0.0168 29 1 6.4307 3.4879 0.8714 30 1 6.4298 3.4795 -0.9086 31 1 4.8275 5.3714 -0.9176 32 1 4.8279 5.3805 0.8624 33 1 7.4983 5.6053 -0.0302 34 1 9.6132 8.1848 -0.0443 35 1 5.6419 -1.2470 -0.4223 36 1 3.4531 -3.4911 -0.3223 37 1 5.2317 -3.7292 -0.7479 38 1 5.8970 -2.8421 1.5335 39 1 4.1186 -2.6037 1.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128334844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 51.629245 kcal Electronic energy + Delta-G solvation = -20585.488299 eV Core-core repulsion = 17336.975609 eV Total energy + Delta-G solvation = -3248.512689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48645 -40.19489 -38.09792 -37.21886 -35.43192 -33.98962 -33.19063 -31.55099 -29.26406 -28.10793 -25.77643 -24.36296 -23.42138 -23.23021 -22.97284 -21.18295 -20.32328 -19.31902 -18.67225 -17.27217 -16.85214 -16.68049 -16.38865 -16.34328 -16.21410 -15.60902 -15.27748 -15.03376 -14.99358 -14.60708 -14.06508 -13.61219 -13.55743 -13.04377 -13.02155 -12.88890 -12.63865 -12.47614 -12.42675 -12.07143 -12.03364 -11.84248 -11.76269 -11.40228 -10.96693 -10.84509 -10.24621 -10.13490 -9.58244 -9.04053 -7.94669 -5.25997 0.51421 0.99662 1.43412 1.49935 1.52415 1.60736 2.18995 2.40433 2.60596 3.02165 3.29864 3.39729 3.55221 3.89283 3.98616 4.04952 4.12608 4.14609 4.27505 4.28006 4.35179 4.43920 4.46908 4.63299 4.71240 4.73365 4.74939 4.92555 5.07985 5.17944 5.19364 5.24023 5.39584 5.44230 5.52169 5.89760 6.26201 6.48607 6.68849 7.32143 7.33171 8.04857 8.27454 9.29202 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002965 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.180347 B = 9442.157695 C =10350.006505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.356 5.356 3 C 0.126 3.874 4 C -0.315 4.315 5 C 0.590 3.410 6 O -0.585 6.585 7 N -0.708 5.708 8 C 0.131 3.869 9 C 0.150 3.850 10 N -0.748 5.748 11 C -0.246 4.246 12 H 0.085 0.915 13 C -0.078 4.078 14 N -0.972 5.972 15 Si 0.979 3.021 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.265 1.265 19 C 0.147 3.853 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.154 4.154 23 N -0.322 5.322 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.231 0.769 28 H 0.414 0.586 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.373 0.627 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 -18.171 0.357 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.133 5.133 3 C -0.028 4.028 4 C -0.330 4.330 5 C 0.379 3.621 6 O -0.466 6.466 7 N -0.360 5.360 8 C 0.006 3.994 9 C 0.023 3.977 10 N -0.392 5.392 11 C -0.378 4.378 12 H 0.103 0.897 13 C -0.271 4.271 14 N -0.622 5.622 15 Si 0.808 3.192 16 H -0.213 1.213 17 H -0.224 1.224 18 H -0.189 1.189 19 C -0.019 4.019 20 C -0.127 4.127 21 C -0.189 4.189 22 C -0.192 4.192 23 N -0.144 5.144 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.114 0.886 27 H 0.247 0.753 28 H 0.251 0.749 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.205 0.795 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.537 -19.355 0.344 28.958 hybrid contribution 0.982 1.792 0.019 2.044 sum -20.554 -17.563 0.363 27.039 Atomic orbital electron populations 1.22452 0.70483 1.06854 1.05482 1.48694 1.08583 1.03005 1.53011 1.23688 0.88862 0.95573 0.94655 1.20130 0.93229 0.93494 1.26185 1.17576 0.87916 0.81659 0.74971 1.90720 1.28744 1.74466 1.52688 1.45465 1.10052 1.05011 1.75481 1.21123 0.87584 0.89691 1.01013 1.20851 0.89860 0.87599 0.99368 1.42452 1.04039 1.02924 1.89753 1.19665 0.93188 0.83402 1.41532 0.89740 1.25679 0.94994 1.02923 1.03462 1.69847 0.97437 1.35684 1.59257 0.85058 0.77064 0.79651 0.77456 1.21324 1.22443 1.18911 1.21564 0.92445 0.92272 0.95646 1.20477 0.94965 0.90359 1.06923 1.23039 1.03450 0.93151 0.99220 1.22993 1.03486 1.01245 0.91512 1.77046 1.00988 1.08772 1.27556 0.88704 0.85614 0.88629 0.75293 0.74896 0.93008 0.92996 0.94259 0.94263 0.79505 0.93950 0.86556 0.88204 0.86742 0.87152 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.44 127.77 1.46 1.90 16 2 N -0.36 -5.63 3.98 -367.78 -1.46 -7.09 16 3 C 0.13 1.96 10.99 84.28 0.93 2.88 16 4 C -0.32 -8.00 6.13 -20.15 -0.12 -8.13 16 5 C 0.59 18.39 7.81 86.66 0.68 19.07 16 6 O -0.59 -23.24 15.00 -4.05 -0.06 -23.30 16 7 N -0.71 -19.09 5.55 -466.35 -2.59 -21.67 16 8 C 0.13 4.55 5.79 86.38 0.50 5.05 16 9 C 0.15 5.63 6.37 86.38 0.55 6.18 16 10 N -0.75 -38.01 5.60 -343.45 -1.92 -39.93 16 11 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 12 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 13 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 14 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 15 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 C 0.15 3.95 6.80 43.52 0.30 4.24 16 20 C -0.11 -2.82 5.65 -11.54 -0.07 -2.88 16 21 C -0.15 -3.03 10.14 30.59 0.31 -2.72 16 22 C -0.15 -3.31 10.23 30.59 0.31 -3.00 16 23 N -0.32 -7.57 12.08 -46.67 -0.56 -8.14 16 24 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.23 1.18 7.46 -2.91 -0.02 1.16 16 28 H 0.41 7.63 7.40 -92.71 -0.69 6.95 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.12 3.58 6.73 -2.39 -0.02 3.56 16 36 H 0.10 1.98 7.90 -2.38 -0.02 1.96 16 37 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -79.26 337.70 1.54 -77.72 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.32 Total: 28.86 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.15 Total: 5.88 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -6.25 Total: -136.70 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -79.26 1.54 -77.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128334844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.345 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds