Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34948 * 126.03938 * 2 1 4 4 C 1.35316 * 107.74501 * 180.14849 * 3 2 1 5 5 C 1.50706 * 126.03464 * 179.87694 * 4 3 2 6 6 C 1.50697 * 109.47194 * 269.71304 * 5 4 3 7 7 O 1.21282 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00427 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00356 * 179.72696 * 8 6 5 10 10 C 1.50702 * 109.47112 * 180.02562 * 9 8 6 11 11 C 1.31005 * 120.00019 * 127.15705 * 10 9 8 12 12 C 1.50697 * 119.99910 * 7.55410 * 11 10 9 13 13 N 1.46500 * 109.46770 * 127.00746 * 12 11 10 14 14 C 1.36938 * 119.99711 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00347 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00009 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99887 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46834 * 59.99993 * 18 16 14 20 20 H 1.48501 * 109.47025 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46988 * 299.99897 * 18 16 14 22 22 C 1.39863 * 107.92202 * 359.61226 * 4 3 2 23 23 N 1.30834 * 108.20309 * 0.23968 * 22 4 3 24 24 H 1.08999 * 109.47539 * 270.25400 * 1 2 3 25 25 H 1.09003 * 109.47292 * 30.25729 * 1 2 3 26 26 H 1.09006 * 109.47641 * 150.25562 * 1 2 3 27 27 H 1.07997 * 126.12556 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.46746 * 149.71735 * 5 4 3 29 29 H 1.08998 * 109.47543 * 29.71493 * 5 4 3 30 30 H 0.97008 * 119.99842 * 0.02562 * 8 6 5 31 31 H 1.09003 * 109.46785 * 299.99708 * 9 8 6 32 32 H 1.09000 * 109.47037 * 59.99918 * 9 8 6 33 33 H 1.07997 * 120.00064 * 307.15306 * 10 9 8 34 34 H 1.08003 * 119.99588 * 187.55971 * 11 10 9 35 35 H 1.09000 * 109.47027 * 247.00856 * 12 11 10 36 36 H 1.08996 * 109.46947 * 7.00874 * 12 11 10 37 37 H 0.96994 * 119.99905 * 0.02562 * 13 12 11 38 38 H 0.96999 * 119.99812 * 179.97438 * 17 16 14 39 39 H 1.08000 * 125.90032 * 180.26077 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0072 6 6 5.1762 1.8317 -1.4292 7 8 4.5359 1.3683 -2.3491 8 7 6.2530 2.6028 -1.6790 9 6 6.6534 2.8763 -3.0614 10 6 7.8777 3.7551 -3.0652 11 6 8.9389 3.3970 -3.7447 12 6 8.8808 2.1988 -4.6567 13 7 9.3436 2.5797 -5.9935 14 6 9.3794 1.6484 -6.9968 15 1 9.0660 0.6333 -6.8028 16 6 9.8184 2.0091 -8.2633 17 7 10.1998 3.2465 -8.5000 18 14 9.8665 0.7390 -9.6322 19 1 8.4989 0.2091 -9.8640 20 1 10.3704 1.3721 -10.8774 21 1 10.7694 -0.3741 -9.2431 22 6 3.5346 -0.7321 0.0036 23 7 2.2891 -1.1328 0.0056 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.9281 2.1193 0.0004 28 1 5.5820 1.0364 0.5090 29 1 4.5441 2.4825 0.5023 30 1 6.7654 2.9732 -0.9433 31 1 6.8791 1.9373 -3.5668 32 1 5.8405 3.3828 -3.5817 33 1 7.8801 4.6802 -2.5079 34 1 9.8555 3.9606 -3.6511 35 1 9.5210 1.4100 -4.2616 36 1 7.8542 1.8375 -4.7169 37 1 9.6253 3.4913 -6.1676 38 1 10.5069 3.4985 -9.3849 39 1 4.4053 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268525512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 78.553291 kcal Electronic energy + Delta-G solvation = -20100.412539 eV Core-core repulsion = 16853.067364 eV Total energy + Delta-G solvation = -3247.345175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39596 -39.42186 -36.53062 -34.43991 -33.82532 -32.82164 -31.89367 -30.40376 -28.69936 -26.81596 -25.62983 -24.55119 -22.45800 -21.29070 -21.04764 -20.09334 -18.67673 -17.23485 -16.99855 -16.57876 -16.12629 -15.56640 -15.45618 -14.82889 -14.53808 -14.28871 -13.81310 -13.60968 -13.35279 -13.20953 -13.13641 -12.86404 -12.70847 -12.60145 -12.31807 -11.90481 -11.68448 -10.93438 -10.76482 -10.75935 -10.41080 -10.03825 -9.88994 -9.74599 -9.57178 -9.10986 -8.98115 -8.59482 -8.51244 -6.89958 -5.74854 -3.03950 1.71551 2.26988 2.35204 2.62290 2.75396 3.47458 3.51083 3.52658 3.58128 4.27642 4.60499 4.63624 4.79388 4.82918 4.90079 4.99320 5.07970 5.09451 5.19927 5.33530 5.43829 5.58279 5.60274 5.73327 5.89982 5.93776 6.00325 6.28941 6.40491 6.46890 6.57387 6.63216 6.80543 6.90488 7.17709 7.52672 7.60440 7.72096 8.34899 8.43803 9.55008 10.11014 10.46429 11.47913 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002707 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.233781 B =10339.629687 C =11169.269842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.068 3.932 4 C -0.220 4.220 5 C -0.059 4.059 6 C 0.506 3.494 7 O -0.531 6.531 8 N -0.727 5.727 9 C 0.141 3.859 10 C -0.198 4.198 11 C -0.110 4.110 12 C 0.161 3.839 13 N -0.728 5.728 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.064 3.936 23 N -0.300 5.300 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.171 0.829 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.398 0.602 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 -0.146 23.632 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.078 4.078 4 C -0.232 4.232 5 C -0.100 4.100 6 C 0.291 3.709 7 O -0.407 6.407 8 N -0.380 5.380 9 C 0.018 3.982 10 C -0.218 4.218 11 C -0.130 4.130 12 C 0.035 3.965 13 N -0.372 5.372 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.122 4.122 23 N -0.121 5.121 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.188 0.812 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.232 0.768 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.528 -1.658 22.836 28.239 hybrid contribution 0.997 0.751 -0.607 1.388 sum -15.531 -0.908 22.229 27.132 Atomic orbital electron populations 1.21831 0.74313 1.04598 1.03114 1.48380 1.06575 1.03881 1.57167 1.22224 0.90829 0.93281 1.01508 1.19414 0.93429 0.93724 1.16614 1.19886 0.96029 0.99965 0.94096 1.20752 0.80184 0.78283 0.91668 1.90739 1.53062 1.50376 1.46530 1.46072 1.30203 1.52591 1.09089 1.20530 0.95274 1.00004 0.82351 1.22600 0.94659 0.99765 1.04766 1.23290 0.97144 0.97913 0.94632 1.20011 0.97819 0.92902 0.85789 1.42264 1.78666 1.11520 1.04759 1.19209 1.36638 0.91875 0.89463 0.91110 1.24759 1.01989 0.96565 0.97659 1.69660 1.50162 1.16592 1.21833 0.86232 0.77785 0.80440 0.81546 1.21155 1.21652 1.21207 1.23735 0.95213 0.94407 0.98848 1.77343 1.01674 1.08209 1.24852 0.90883 0.89528 0.89305 0.81185 0.88127 0.88556 0.76848 0.89472 0.91314 0.87116 0.86948 0.95445 0.94630 0.78176 0.93441 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.84 0.69 1.30 16 2 N -0.38 -3.95 4.01 -68.17 -0.27 -4.22 16 3 C 0.07 0.66 11.40 -17.22 -0.20 0.46 16 4 C -0.22 -2.32 4.59 -105.05 -0.48 -2.80 16 5 C -0.06 -0.48 6.19 -29.03 -0.18 -0.66 16 6 C 0.51 6.24 7.82 -10.99 -0.09 6.15 16 7 O -0.53 -9.34 16.03 5.56 0.09 -9.25 16 8 N -0.73 -7.99 5.55 -61.47 -0.34 -8.33 16 9 C 0.14 2.01 5.76 -5.19 -0.03 1.98 16 10 C -0.20 -2.67 9.63 -36.03 -0.35 -3.02 16 11 C -0.11 -1.79 9.63 -36.03 -0.35 -2.14 16 12 C 0.16 3.34 6.35 -5.19 -0.03 3.30 16 13 N -0.73 -19.02 5.59 -61.09 -0.34 -19.36 16 14 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 15 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 18 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.06 0.75 11.96 -17.37 -0.21 0.54 16 23 N -0.30 -3.86 12.58 30.62 0.39 -3.48 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.40 3.00 8.46 -40.82 -0.35 2.66 16 31 H 0.09 1.47 5.30 -51.93 -0.28 1.20 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.76 5.29 -51.93 -0.27 0.48 16 37 H 0.38 10.47 7.66 -40.82 -0.31 10.16 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -37.55 340.06 -6.53 -44.08 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.40 Total: 8.03 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.47 Total: -2.49 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.15 Total: -63.41 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.55 -6.53 -44.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268525512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.634 kcal (2) G-P(sol) polarization free energy of solvation -37.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds