Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34948 * 126.03938 * 2 1 4 4 C 1.35316 * 107.74501 * 180.14849 * 3 2 1 5 5 C 1.50706 * 126.03464 * 179.87694 * 4 3 2 6 6 C 1.50697 * 109.47194 * 269.71304 * 5 4 3 7 7 O 1.21282 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00427 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00356 * 179.72696 * 8 6 5 10 10 C 1.50702 * 109.47112 * 180.02562 * 9 8 6 11 11 C 1.31005 * 120.00019 * 127.15705 * 10 9 8 12 12 C 1.50697 * 119.99910 * 7.55410 * 11 10 9 13 13 N 1.46500 * 109.46770 * 127.00746 * 12 11 10 14 14 C 1.36938 * 119.99711 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00347 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00009 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99887 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46834 * 59.99993 * 18 16 14 20 20 H 1.48501 * 109.47025 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46988 * 299.99897 * 18 16 14 22 22 C 1.39863 * 107.92202 * 359.61226 * 4 3 2 23 23 N 1.30834 * 108.20309 * 0.23968 * 22 4 3 24 24 H 1.08999 * 109.47539 * 270.25400 * 1 2 3 25 25 H 1.09003 * 109.47292 * 30.25729 * 1 2 3 26 26 H 1.09006 * 109.47641 * 150.25562 * 1 2 3 27 27 H 1.07997 * 126.12556 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.46746 * 149.71735 * 5 4 3 29 29 H 1.08998 * 109.47543 * 29.71493 * 5 4 3 30 30 H 0.97008 * 119.99842 * 0.02562 * 8 6 5 31 31 H 1.09003 * 109.46785 * 299.99708 * 9 8 6 32 32 H 1.09000 * 109.47037 * 59.99918 * 9 8 6 33 33 H 1.07997 * 120.00064 * 307.15306 * 10 9 8 34 34 H 1.08003 * 119.99588 * 187.55971 * 11 10 9 35 35 H 1.09000 * 109.47027 * 247.00856 * 12 11 10 36 36 H 1.08996 * 109.46947 * 7.00874 * 12 11 10 37 37 H 0.96994 * 119.99905 * 0.02562 * 13 12 11 38 38 H 0.96999 * 119.99812 * 179.97438 * 17 16 14 39 39 H 1.08000 * 125.90032 * 180.26077 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6665 -0.0033 5 6 4.7679 1.5453 -0.0072 6 6 5.1762 1.8317 -1.4292 7 8 4.5359 1.3683 -2.3491 8 7 6.2530 2.6028 -1.6790 9 6 6.6534 2.8763 -3.0614 10 6 7.8777 3.7551 -3.0652 11 6 8.9389 3.3970 -3.7447 12 6 8.8808 2.1988 -4.6567 13 7 9.3436 2.5797 -5.9935 14 6 9.3794 1.6484 -6.9968 15 1 9.0660 0.6333 -6.8028 16 6 9.8184 2.0091 -8.2633 17 7 10.1998 3.2465 -8.5000 18 14 9.8665 0.7390 -9.6322 19 1 8.4989 0.2091 -9.8640 20 1 10.3704 1.3721 -10.8774 21 1 10.7694 -0.3741 -9.2431 22 6 3.5346 -0.7321 0.0036 23 7 2.2891 -1.1328 0.0056 24 1 -0.3634 0.0046 1.0276 25 1 -0.3634 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5099 27 1 1.9281 2.1193 0.0004 28 1 5.5820 1.0364 0.5090 29 1 4.5441 2.4825 0.5023 30 1 6.7654 2.9732 -0.9433 31 1 6.8791 1.9373 -3.5668 32 1 5.8405 3.3828 -3.5817 33 1 7.8801 4.6802 -2.5079 34 1 9.8555 3.9606 -3.6511 35 1 9.5210 1.4100 -4.2616 36 1 7.8542 1.8375 -4.7169 37 1 9.6253 3.4913 -6.1676 38 1 10.5069 3.4985 -9.3849 39 1 4.4053 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268525512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 50.115001 kcal Electronic energy + Delta-G solvation = -20101.645716 eV Core-core repulsion = 16853.067364 eV Total energy + Delta-G solvation = -3248.578352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13789 -40.44149 -37.93624 -36.04116 -34.53667 -34.31708 -32.78243 -32.19649 -29.47518 -28.00349 -26.89094 -25.76538 -24.38718 -22.02585 -21.94098 -20.97813 -20.03737 -18.97620 -17.83172 -17.70208 -17.32894 -16.55098 -16.45749 -16.20476 -15.68680 -15.38529 -15.24862 -15.05769 -14.58393 -14.30127 -14.15537 -13.93522 -13.77095 -13.40581 -13.31377 -13.07980 -12.90620 -12.70800 -12.61737 -12.22628 -11.90424 -11.63563 -11.51667 -11.03094 -10.93086 -10.34006 -10.25361 -9.85066 -9.28769 -8.99744 -7.98420 -5.27877 0.97539 1.10546 1.45587 1.49026 1.55288 1.72464 1.80681 1.81532 2.54597 2.65576 3.34677 3.67167 3.84536 4.01929 4.08869 4.16691 4.18381 4.31745 4.36480 4.40375 4.44271 4.55643 4.66780 4.67931 4.85437 4.91445 4.92133 4.93038 5.12260 5.21527 5.44241 5.50665 5.61740 5.71936 5.90242 6.18461 6.24535 6.74555 6.75988 7.30256 7.45275 8.04335 8.29284 9.24762 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002707 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.233781 B =10339.629687 C =11169.269842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.385 5.385 3 C 0.067 3.933 4 C -0.240 4.240 5 C -0.045 4.045 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.711 5.711 9 C 0.141 3.859 10 C -0.155 4.155 11 C -0.139 4.139 12 C 0.161 3.839 13 N -0.741 5.741 14 C -0.252 4.252 15 H 0.072 0.928 16 C -0.074 4.074 17 N -0.967 5.967 18 Si 0.975 3.025 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.045 3.955 23 N -0.343 5.343 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.203 0.797 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.419 0.581 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.024 0.976 36 H 0.031 0.969 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 0.873 25.540 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.081 4.081 4 C -0.252 4.252 5 C -0.086 4.086 6 C 0.292 3.708 7 O -0.471 6.471 8 N -0.364 5.364 9 C 0.017 3.983 10 C -0.174 4.174 11 C -0.158 4.158 12 C 0.035 3.965 13 N -0.384 5.384 14 C -0.384 4.384 15 H 0.090 0.910 16 C -0.266 4.266 17 N -0.618 5.618 18 Si 0.804 3.196 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.140 4.140 23 N -0.165 5.165 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.220 0.780 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.084 -0.648 24.821 30.139 hybrid contribution 1.047 0.432 -1.101 1.580 sum -16.037 -0.216 23.720 28.633 Atomic orbital electron populations 1.22153 0.72297 1.05532 1.04683 1.48765 1.07904 1.03536 1.56483 1.22841 0.90716 0.94454 1.00044 1.19776 0.94794 0.93489 1.17121 1.19941 0.95864 1.01602 0.91189 1.21574 0.79363 0.76976 0.92907 1.90723 1.55005 1.52642 1.48687 1.45863 1.30096 1.52199 1.08267 1.20292 0.95335 0.98571 0.84086 1.22819 0.92423 0.99806 1.02333 1.23025 0.99092 0.97490 0.96179 1.20080 0.96873 0.95103 0.84423 1.42474 1.78844 1.10699 1.06422 1.19594 1.35805 0.92493 0.90504 0.91008 1.25601 1.02347 0.98604 1.00054 1.69808 1.51455 1.18369 1.22119 0.85191 0.77920 0.78175 0.78361 1.20624 1.21632 1.20178 1.24092 0.95356 0.95649 0.98889 1.77252 1.02623 1.10100 1.26558 0.88993 0.87190 0.89801 0.77984 0.85578 0.84765 0.74316 0.92643 0.92469 0.82963 0.85769 0.95874 0.95186 0.79205 0.93792 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.47 127.77 1.47 2.45 16 2 N -0.38 -7.68 4.01 -369.58 -1.48 -9.16 16 3 C 0.07 1.16 11.40 83.54 0.95 2.11 16 4 C -0.24 -4.68 4.59 -20.14 -0.09 -4.77 16 5 C -0.05 -0.60 6.19 29.10 0.18 -0.42 16 6 C 0.50 11.52 7.82 87.66 0.69 12.21 16 7 O -0.59 -20.74 16.03 -3.04 -0.05 -20.79 16 8 N -0.71 -13.81 5.55 -466.79 -2.59 -16.40 16 9 C 0.14 3.85 5.76 85.63 0.49 4.34 16 10 C -0.15 -3.75 9.63 25.64 0.25 -3.51 16 11 C -0.14 -4.32 9.63 25.64 0.25 -4.08 16 12 C 0.16 6.72 6.35 85.63 0.54 7.27 16 13 N -0.74 -39.45 5.59 -347.19 -1.94 -41.39 16 14 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 15 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 16 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 17 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 18 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 C 0.05 1.05 11.96 85.23 1.02 2.07 16 23 N -0.34 -8.93 12.58 -57.03 -0.72 -9.65 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 28 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.42 4.61 8.46 -92.70 -0.78 3.83 16 31 H 0.06 1.90 5.30 -2.39 -0.01 1.89 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 1.31 5.29 -2.39 -0.01 1.30 16 37 H 0.38 20.89 7.66 -92.71 -0.71 20.18 16 38 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -84.39 340.06 2.15 -82.23 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.42 Total: 25.83 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 7.05 Total: -0.15 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -6.45 Total: -136.69 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -84.39 2.15 -82.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268525512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.347 kcal (2) G-P(sol) polarization free energy of solvation -84.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds