Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34950 * 126.03649 * 2 1 4 4 C 1.35310 * 107.74846 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04425 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47275 * 89.99553 * 5 4 3 7 7 O 1.21285 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00008 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46948 * 174.94227 * 9 8 6 11 11 N 1.46505 * 115.55024 * 80.38544 * 10 9 8 12 12 C 1.36938 * 119.99737 * 65.27445 * 11 10 9 13 13 H 1.07997 * 120.00128 * 354.73939 * 12 11 10 14 14 C 1.38813 * 120.00038 * 174.45800 * 12 11 10 15 15 N 1.31610 * 120.00100 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 119.99785 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47097 * 89.99641 * 16 14 12 18 18 H 1.48496 * 109.46771 * 210.00033 * 16 14 12 19 19 H 1.48500 * 109.46838 * 329.99409 * 16 14 12 20 20 C 1.52995 * 117.49872 * 226.05876 * 10 9 8 21 21 C 1.53002 * 117.49982 * 294.71995 * 10 9 8 22 22 C 1.39874 * 107.91689 * 0.26283 * 4 3 2 23 23 N 1.30841 * 108.20311 * 359.55735 * 22 4 3 24 24 H 1.09004 * 109.47276 * 89.99433 * 1 2 3 25 25 H 1.09004 * 109.47127 * 210.00007 * 1 2 3 26 26 H 1.09010 * 109.47276 * 329.99542 * 1 2 3 27 27 H 1.08008 * 126.12604 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46815 * 329.99746 * 5 4 3 29 29 H 1.09002 * 109.46965 * 209.99742 * 5 4 3 30 30 H 0.97001 * 119.99786 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.47255 * 54.94194 * 9 8 6 32 32 H 1.08999 * 109.46673 * 294.93754 * 9 8 6 33 33 H 0.96998 * 120.00497 * 245.27841 * 11 10 9 34 34 H 0.97005 * 119.99848 * 180.02562 * 15 14 12 35 35 H 1.09007 * 117.49708 * 215.00165 * 20 10 9 36 36 H 1.08996 * 117.50212 * 0.02562 * 20 10 9 37 37 H 1.08996 * 117.49829 * 359.97156 * 21 10 9 38 38 H 1.08994 * 117.49914 * 144.97651 * 21 10 9 39 39 H 1.07996 * 125.89668 * 179.74298 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5454 -0.0002 6 6 5.1764 1.8374 1.4206 7 8 4.5365 1.3769 2.3423 8 7 6.2526 2.6103 1.6672 9 6 6.6499 2.8937 3.0486 10 6 7.9623 3.6801 3.0506 11 7 7.8383 5.1172 2.7940 12 6 7.1796 5.9180 3.6885 13 1 6.6787 5.4795 4.5389 14 6 7.1607 7.2938 3.5053 15 7 6.5281 8.0635 4.3652 16 14 8.0332 8.0529 2.0382 17 1 7.0927 8.1369 0.8921 18 1 8.5042 9.4157 2.3932 19 1 9.1963 7.2092 1.6633 20 6 9.0556 3.2274 4.0204 21 6 9.2106 2.9728 2.5189 22 6 3.5346 -0.7320 -0.0070 23 7 2.2891 -1.1327 -0.0006 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9281 2.1194 0.0004 28 1 4.5441 2.4806 -0.5134 29 1 5.5820 1.0345 -0.5146 30 1 6.7645 2.9783 0.9301 31 1 6.7874 1.9559 3.5868 32 1 5.8729 3.4822 3.5365 33 1 8.2227 5.5014 1.9906 34 1 6.5145 9.0250 4.2370 35 1 9.6827 3.9988 4.4676 36 1 8.8401 2.3691 4.6567 37 1 9.0968 1.9471 2.1682 38 1 9.9392 3.5765 1.9781 39 1 4.4053 -1.3709 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269383985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 85.277572 kcal Electronic energy + Delta-G solvation = -20972.169206 eV Core-core repulsion = 17725.115617 eV Total energy + Delta-G solvation = -3247.053588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25647 -39.24862 -37.57465 -33.74984 -33.64656 -33.01643 -31.76984 -30.37195 -28.66558 -26.81237 -25.19462 -23.59665 -22.01045 -21.15320 -20.77869 -19.81964 -19.05788 -17.67858 -16.99183 -16.69989 -15.74980 -15.42244 -15.25508 -14.79613 -14.40428 -14.25773 -14.01242 -13.46177 -13.21293 -13.10339 -12.73634 -12.67330 -12.55511 -12.38228 -12.16422 -11.63039 -11.24220 -11.06588 -10.99939 -10.64647 -10.54859 -10.14181 -9.68790 -9.65310 -9.44630 -9.35942 -8.92221 -8.57766 -8.39491 -7.38151 -5.83194 -3.21521 1.85259 2.45837 2.71818 3.01711 3.31002 3.32891 3.39738 3.63745 4.39007 4.42804 4.51662 4.78313 4.93501 4.97123 4.99182 5.05176 5.16504 5.18821 5.26430 5.37677 5.41259 5.53376 5.61498 5.73002 5.74510 5.99201 6.06927 6.20989 6.33027 6.40172 6.59249 6.63641 6.69252 6.87582 6.93824 7.64462 7.91941 7.93972 8.35405 8.62606 9.12285 9.83632 10.01800 11.34561 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003778 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.114554 B = 7410.357910 C = 8102.586758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.069 3.931 4 C -0.216 4.216 5 C -0.061 4.061 6 C 0.507 3.493 7 O -0.541 6.541 8 N -0.717 5.717 9 C 0.149 3.851 10 C 0.133 3.867 11 N -0.714 5.714 12 C -0.243 4.243 13 H 0.092 0.908 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.882 3.118 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.182 4.182 21 C -0.188 4.188 22 C 0.063 3.937 23 N -0.303 5.303 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.398 0.602 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.364 0.636 34 H 0.260 0.740 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -14.724 -12.276 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.077 4.077 4 C -0.228 4.228 5 C -0.102 4.102 6 C 0.292 3.708 7 O -0.418 6.418 8 N -0.368 5.368 9 C 0.023 3.977 10 C 0.040 3.960 11 N -0.355 5.355 12 C -0.373 4.373 13 H 0.110 0.890 14 C -0.188 4.188 15 N -0.576 5.576 16 Si 0.712 3.288 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.203 1.203 20 C -0.223 4.223 21 C -0.226 4.226 22 C -0.124 4.124 23 N -0.124 5.124 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.189 0.811 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.232 0.768 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.198 0.802 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.187 -15.917 -11.384 20.524 hybrid contribution 1.397 1.775 -1.237 2.575 sum -4.790 -14.142 -12.621 19.551 Atomic orbital electron populations 1.21824 0.74376 1.04534 1.03073 1.48353 1.06515 1.03868 1.57345 1.22280 0.90872 0.93331 1.01251 1.19424 0.93509 0.93634 1.16196 1.19902 0.95785 0.99993 0.94530 1.20654 0.80212 0.78449 0.91437 1.90693 1.53060 1.51666 1.46388 1.45944 1.29988 1.51410 1.09438 1.21186 0.96480 0.97895 0.82105 1.20085 0.87756 0.85383 1.02794 1.42106 1.67410 1.01011 1.25023 1.18992 1.25585 0.88029 1.04671 0.88975 1.24676 1.00194 0.95839 0.98064 1.69696 1.46965 1.04175 1.36800 0.86588 0.79756 0.79018 0.83389 1.21055 1.21701 1.20263 1.23356 1.04395 1.02807 0.91695 1.23124 1.00786 1.00665 0.97993 1.23690 0.95132 0.94405 0.99148 1.77295 1.01659 1.08351 1.25098 0.90936 0.89424 0.89483 0.81061 0.88483 0.88378 0.76831 0.92014 0.90381 0.80183 0.92951 0.88476 0.89568 0.89128 0.89206 0.80303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.51 4.01 -68.15 -0.27 -4.78 16 3 C 0.07 0.81 11.40 -17.22 -0.20 0.62 16 4 C -0.22 -2.69 4.59 -105.05 -0.48 -3.17 16 5 C -0.06 -0.66 6.19 -29.04 -0.18 -0.84 16 6 C 0.51 7.66 7.82 -10.99 -0.09 7.58 16 7 O -0.54 -10.57 16.03 5.55 0.09 -10.48 16 8 N -0.72 -10.61 5.51 -60.30 -0.33 -10.94 16 9 C 0.15 2.63 5.73 -4.04 -0.02 2.61 16 10 C 0.13 2.40 2.15 -131.82 -0.28 2.12 16 11 N -0.71 -15.82 5.29 -47.23 -0.25 -16.07 16 12 C -0.24 -6.58 10.05 -15.06 -0.15 -6.74 16 13 H 0.09 2.73 7.99 -52.49 -0.42 2.31 16 14 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 16 Si 0.88 21.17 27.68 -169.99 -4.71 16.46 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.20 6.60 56.52 0.37 -5.83 16 20 C -0.18 -3.02 10.11 -26.70 -0.27 -3.29 16 21 C -0.19 -2.73 10.14 -26.69 -0.27 -3.00 16 22 C 0.06 0.80 11.96 -17.36 -0.21 0.59 16 23 N -0.30 -4.20 12.58 30.63 0.39 -3.81 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.40 5.01 8.48 -40.82 -0.35 4.66 16 31 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 32 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 33 H 0.36 7.85 5.96 -40.82 -0.24 7.61 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 36 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -35.67 338.72 -6.40 -42.07 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.63 Total: 12.19 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.56 Total: -1.94 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.30 Total: -63.41 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.67 -6.40 -42.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269383985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.351 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds