Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34950 * 126.03649 * 2 1 4 4 C 1.35310 * 107.74846 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04425 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47275 * 89.99553 * 5 4 3 7 7 O 1.21285 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00008 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46948 * 174.94227 * 9 8 6 11 11 N 1.46505 * 115.55024 * 80.38544 * 10 9 8 12 12 C 1.36938 * 119.99737 * 65.27445 * 11 10 9 13 13 H 1.07997 * 120.00128 * 354.73939 * 12 11 10 14 14 C 1.38813 * 120.00038 * 174.45800 * 12 11 10 15 15 N 1.31610 * 120.00100 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 119.99785 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47097 * 89.99641 * 16 14 12 18 18 H 1.48496 * 109.46771 * 210.00033 * 16 14 12 19 19 H 1.48500 * 109.46838 * 329.99409 * 16 14 12 20 20 C 1.52995 * 117.49872 * 226.05876 * 10 9 8 21 21 C 1.53002 * 117.49982 * 294.71995 * 10 9 8 22 22 C 1.39874 * 107.91689 * 0.26283 * 4 3 2 23 23 N 1.30841 * 108.20311 * 359.55735 * 22 4 3 24 24 H 1.09004 * 109.47276 * 89.99433 * 1 2 3 25 25 H 1.09004 * 109.47127 * 210.00007 * 1 2 3 26 26 H 1.09010 * 109.47276 * 329.99542 * 1 2 3 27 27 H 1.08008 * 126.12604 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46815 * 329.99746 * 5 4 3 29 29 H 1.09002 * 109.46965 * 209.99742 * 5 4 3 30 30 H 0.97001 * 119.99786 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.47255 * 54.94194 * 9 8 6 32 32 H 1.08999 * 109.46673 * 294.93754 * 9 8 6 33 33 H 0.96998 * 120.00497 * 245.27841 * 11 10 9 34 34 H 0.97005 * 119.99848 * 180.02562 * 15 14 12 35 35 H 1.09007 * 117.49708 * 215.00165 * 20 10 9 36 36 H 1.08996 * 117.50212 * 0.02562 * 20 10 9 37 37 H 1.08996 * 117.49829 * 359.97156 * 21 10 9 38 38 H 1.08994 * 117.49914 * 144.97651 * 21 10 9 39 39 H 1.07996 * 125.89668 * 179.74298 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7680 1.5454 -0.0002 6 6 5.1764 1.8374 1.4206 7 8 4.5365 1.3769 2.3423 8 7 6.2526 2.6103 1.6672 9 6 6.6499 2.8937 3.0486 10 6 7.9623 3.6801 3.0506 11 7 7.8383 5.1172 2.7940 12 6 7.1796 5.9180 3.6885 13 1 6.6787 5.4795 4.5389 14 6 7.1607 7.2938 3.5053 15 7 6.5281 8.0635 4.3652 16 14 8.0332 8.0529 2.0382 17 1 7.0927 8.1369 0.8921 18 1 8.5042 9.4157 2.3932 19 1 9.1963 7.2092 1.6633 20 6 9.0556 3.2274 4.0204 21 6 9.2106 2.9728 2.5189 22 6 3.5346 -0.7320 -0.0070 23 7 2.2891 -1.1327 -0.0006 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9281 2.1194 0.0004 28 1 4.5441 2.4806 -0.5134 29 1 5.5820 1.0345 -0.5146 30 1 6.7645 2.9783 0.9301 31 1 6.7874 1.9559 3.5868 32 1 5.8729 3.4822 3.5365 33 1 8.2227 5.5014 1.9906 34 1 6.5145 9.0250 4.2370 35 1 9.6827 3.9988 4.4676 36 1 8.8401 2.3691 4.6567 37 1 9.0968 1.9471 2.1682 38 1 9.9392 3.5765 1.9781 39 1 4.4053 -1.3709 -0.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269383985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 58.285453 kcal Electronic energy + Delta-G solvation = -20973.339672 eV Core-core repulsion = 17725.115617 eV Total energy + Delta-G solvation = -3248.224055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.13346 -40.51399 -38.99105 -35.26245 -34.73624 -34.50006 -32.67969 -32.34214 -29.59040 -27.88444 -26.21101 -25.58280 -23.28290 -22.00645 -21.82943 -20.99716 -20.46520 -19.70223 -18.07820 -17.68981 -17.13812 -16.53543 -16.25944 -16.18216 -15.95603 -15.35281 -15.27101 -14.72031 -14.46002 -14.27916 -14.17344 -13.88334 -13.59890 -13.39903 -13.15582 -13.03958 -12.85411 -12.58907 -12.33442 -12.24195 -11.79837 -11.64211 -11.53201 -11.02218 -10.96971 -10.58304 -10.32666 -9.91612 -9.35468 -9.24379 -8.00095 -5.36169 0.97745 1.39896 1.44428 1.51809 1.69972 1.79332 1.85311 2.47632 2.50516 3.07773 3.29377 3.45088 3.67278 3.84296 4.01312 4.08771 4.19335 4.28037 4.32669 4.39942 4.43679 4.53870 4.66934 4.79238 4.83393 4.87478 4.89624 4.91832 5.06539 5.19141 5.22742 5.39078 5.60018 5.73835 5.81541 6.15843 6.23147 6.75624 6.78705 7.09357 7.46996 7.82954 8.03364 9.21505 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003778 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.114554 B = 7410.357910 C = 8102.586758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.060 3.940 4 C -0.235 4.235 5 C -0.048 4.048 6 C 0.505 3.495 7 O -0.592 6.592 8 N -0.708 5.708 9 C 0.162 3.838 10 C 0.102 3.898 11 N -0.714 5.714 12 C -0.223 4.223 13 H 0.048 0.952 14 C -0.065 4.065 15 N -0.986 5.986 16 Si 0.959 3.041 17 H -0.275 1.275 18 H -0.302 1.302 19 H -0.245 1.245 20 C -0.192 4.192 21 C -0.141 4.141 22 C 0.051 3.949 23 N -0.338 5.338 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.193 0.807 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.413 0.587 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.371 0.629 34 H 0.257 0.743 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -15.664 -15.274 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.167 5.167 3 C -0.087 4.087 4 C -0.247 4.247 5 C -0.089 4.089 6 C 0.293 3.707 7 O -0.472 6.472 8 N -0.359 5.359 9 C 0.035 3.965 10 C 0.010 3.990 11 N -0.356 5.356 12 C -0.354 4.354 13 H 0.066 0.934 14 C -0.256 4.256 15 N -0.637 5.637 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.229 1.229 19 H -0.170 1.170 20 C -0.232 4.232 21 C -0.179 4.179 22 C -0.134 4.134 23 N -0.160 5.160 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.210 0.790 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.206 0.794 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.584 -16.921 -14.434 22.708 hybrid contribution 0.820 1.965 -0.205 2.139 sum -3.765 -14.956 -14.639 21.264 Atomic orbital electron populations 1.22147 0.72326 1.05496 1.04658 1.48730 1.07854 1.03432 1.56634 1.22773 0.91139 0.94305 1.00501 1.19720 0.94357 0.93791 1.16828 1.19933 0.96256 1.01201 0.91464 1.21490 0.79196 0.77151 0.92848 1.90677 1.54537 1.53584 1.48407 1.45848 1.30256 1.51229 1.08560 1.20809 0.94878 0.97140 0.83652 1.20260 0.89021 0.83512 1.06192 1.41941 1.66965 1.02426 1.24293 1.18842 1.24220 0.88580 1.03774 0.93364 1.25553 1.01879 0.96410 1.01780 1.69907 1.49713 1.04253 1.39783 0.85354 0.79385 0.77455 0.79198 1.20125 1.22936 1.16956 1.23386 1.03195 1.02932 0.93674 1.23232 0.97126 1.01742 0.95787 1.24108 0.95473 0.95125 0.98700 1.77221 1.02537 1.09822 1.26447 0.89017 0.89387 0.87648 0.78984 0.86195 0.84945 0.75104 0.91502 0.95374 0.79400 0.93431 0.90186 0.88063 0.85921 0.87944 0.78504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.47 127.77 1.47 2.72 16 2 N -0.38 -8.78 4.01 -369.54 -1.48 -10.27 16 3 C 0.06 1.33 11.40 83.54 0.95 2.28 16 4 C -0.24 -5.44 4.59 -20.14 -0.09 -5.53 16 5 C -0.05 -0.89 6.19 29.10 0.18 -0.71 16 6 C 0.51 14.46 7.82 87.66 0.69 15.15 16 7 O -0.59 -23.13 16.03 -3.04 -0.05 -23.18 16 8 N -0.71 -19.54 5.51 -463.06 -2.55 -22.09 16 9 C 0.16 5.68 5.73 86.38 0.49 6.17 16 10 C 0.10 3.51 2.15 3.60 0.01 3.52 16 11 N -0.71 -30.81 5.29 -303.34 -1.60 -32.41 16 12 C -0.22 -12.37 10.05 84.03 0.84 -11.52 16 13 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 14 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 15 N -0.99 -62.90 13.97 21.65 0.30 -62.59 16 16 Si 0.96 43.45 27.68 68.60 1.90 45.35 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 19 H -0.25 -9.73 6.60 99.48 0.66 -9.07 16 20 C -0.19 -6.01 10.11 30.62 0.31 -5.70 16 21 C -0.14 -3.51 10.14 30.62 0.31 -3.19 16 22 C 0.05 1.25 11.96 85.24 1.02 2.27 16 23 N -0.34 -9.20 12.58 -57.02 -0.72 -9.92 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.41 8.96 8.48 -92.71 -0.79 8.17 16 31 H 0.07 2.26 7.94 -2.39 -0.02 2.24 16 32 H 0.03 1.26 7.72 -2.39 -0.02 1.24 16 33 H 0.37 14.90 5.96 -92.71 -0.55 14.35 16 34 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 35 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 36 H 0.10 2.84 8.08 -2.39 -0.02 2.82 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.33 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -81.76 338.72 2.12 -79.64 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.32 Total: 33.30 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.64 Total: 2.16 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -6.06 Total: -137.28 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.90 Total: 45.35 kcal Total: -81.76 2.12 -79.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269383985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.927 kcal (2) G-P(sol) polarization free energy of solvation -81.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds