Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99934 * 2 1 4 4 C 1.50700 * 109.46912 * 270.00300 * 3 2 1 5 5 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99555 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00282 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47348 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47406 * 119.99805 * 8 6 4 11 11 H 1.48509 * 109.47027 * 239.99695 * 8 6 4 12 12 C 1.34777 * 120.00001 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99923 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00128 * 359.97438 * 12 2 1 15 15 C 1.39496 * 119.99901 * 180.28069 * 14 12 2 16 16 C 1.36105 * 126.21616 * 359.74062 * 15 14 12 17 17 C 1.39773 * 107.82739 * 179.97438 * 16 15 14 18 18 C 1.50699 * 125.83988 * 179.97438 * 17 16 15 19 19 C 1.53003 * 117.49733 * 343.74524 * 18 17 16 20 20 C 1.53000 * 117.49652 * 275.08973 * 18 17 16 21 21 N 1.30845 * 108.31860 * 0.02562 * 17 16 15 22 22 N 1.35245 * 126.21759 * 179.43510 * 15 14 12 23 23 C 1.46509 * 126.04254 * 0.02562 * 22 15 14 24 24 H 1.09001 * 109.47017 * 269.99778 * 1 2 3 25 25 H 1.08999 * 109.47701 * 29.99507 * 1 2 3 26 26 H 1.09005 * 109.47188 * 150.00374 * 1 2 3 27 27 H 1.08996 * 109.47092 * 30.00115 * 3 2 1 28 28 H 1.08998 * 109.47416 * 150.00325 * 3 2 1 29 29 H 0.96996 * 119.99369 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 31 31 H 1.08000 * 126.08899 * 0.02562 * 16 15 14 32 32 H 1.08992 * 115.55038 * 129.41985 * 18 17 16 33 33 H 1.08997 * 117.50208 * 0.02562 * 19 18 17 34 34 H 1.08998 * 117.49848 * 145.02437 * 19 18 17 35 35 H 1.09004 * 117.49772 * 214.98412 * 20 18 17 36 36 H 1.08997 * 117.49964 * 359.96942 * 20 18 17 37 37 H 1.08997 * 109.46957 * 89.99867 * 23 22 15 38 38 H 1.09002 * 109.46697 * 209.99729 * 23 22 15 39 39 H 1.08997 * 109.46491 * 329.99949 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4373 3.4171 -3.4340 9 1 2.8594 2.4171 -4.3674 10 1 2.8003 4.7382 -3.6666 11 1 4.8999 3.5248 -3.6680 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1625 -3.5425 0.0049 16 6 3.5156 -3.6898 0.0054 17 6 3.7969 -5.0589 0.0122 18 6 5.1712 -5.6773 0.0145 19 6 6.3498 -4.7809 -0.3705 20 6 5.8640 -5.8641 -1.3368 21 7 2.6630 -5.7118 0.0149 22 7 1.6172 -4.7800 0.0163 23 6 0.1855 -5.0911 0.0247 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8901 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0309 4.4435 -0.8505 30 1 0.4950 -2.3344 0.0002 31 1 4.2425 -2.8910 0.0022 32 1 5.3441 -6.4358 0.7779 33 1 6.1314 -3.7438 -0.6251 34 1 7.2983 -4.9500 0.1393 35 1 6.4930 -6.7455 -1.4622 36 1 5.3257 -5.5403 -2.2275 37 1 -0.1739 -5.1758 -1.0009 38 1 0.0218 -6.0342 0.5461 39 1 -0.3562 -4.2948 0.5350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476625413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 94.228881 kcal Electronic energy + Delta-G solvation = -21576.957919 eV Core-core repulsion = 18330.292488 eV Total energy + Delta-G solvation = -3246.665431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32795 -39.41751 -37.04790 -35.14105 -34.44597 -32.74637 -32.52864 -28.96676 -27.69064 -26.80693 -25.88998 -23.49533 -22.96441 -22.28012 -20.80114 -19.90926 -18.91851 -17.78862 -16.76443 -16.60726 -15.84926 -15.53563 -15.30603 -14.69371 -14.56619 -14.25872 -13.93621 -13.31970 -13.19317 -13.10097 -12.60097 -12.45589 -12.26030 -12.02724 -11.80710 -11.37027 -11.25833 -11.02484 -10.93605 -10.64447 -10.62021 -10.31357 -10.18424 -10.01960 -9.67049 -9.28249 -8.59141 -8.47159 -7.98624 -7.58109 -6.08132 -4.12986 2.02965 2.24637 2.99483 3.15649 3.28140 3.36337 3.40545 3.83500 3.96943 4.26735 4.43728 4.45886 4.79200 4.99759 5.02932 5.05124 5.24712 5.26359 5.33645 5.37083 5.66651 5.71659 5.73027 5.75950 5.94991 6.03025 6.16904 6.26300 6.30547 6.39214 6.70665 7.03181 7.21564 7.32637 7.43865 7.53549 7.88339 7.97258 8.17289 8.43489 8.87157 9.09900 9.52497 10.99859 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004757 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.139916 B = 5884.142557 C = 6953.662046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.260 3.740 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.705 3.295 13 O -0.551 6.551 14 N -0.670 5.670 15 C 0.337 3.663 16 C -0.277 4.277 17 C 0.117 3.883 18 C -0.078 4.078 19 C -0.164 4.164 20 C -0.167 4.167 21 N -0.300 5.300 22 N -0.399 5.399 23 C 0.104 3.896 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.263 0.737 30 H 0.400 0.600 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 -15.791 2.133 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.141 3.859 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.406 3.594 13 O -0.425 6.425 14 N -0.323 5.323 15 C 0.116 3.884 16 C -0.309 4.309 17 C -0.049 4.049 18 C -0.098 4.098 19 C -0.201 4.201 20 C -0.205 4.205 21 N -0.123 5.123 22 N -0.187 5.187 23 C -0.038 4.038 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.236 0.764 31 H 0.194 0.806 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.488 -16.615 2.190 17.634 hybrid contribution -0.411 1.196 -0.994 1.608 sum -5.900 -15.419 1.196 16.552 Atomic orbital electron populations 1.21629 0.81605 1.02490 1.00521 1.47490 1.05761 1.05986 1.75119 1.19315 0.92459 0.76467 0.97683 1.21471 1.36659 1.06318 0.92280 0.92405 1.24920 0.95255 0.96340 0.97468 1.69939 1.38303 1.14349 1.30671 0.86437 0.78175 0.78251 0.84515 1.19867 1.20970 1.20783 1.15641 0.85463 0.79455 0.78889 1.90840 1.11094 1.84735 1.55793 1.42343 1.09479 1.02629 1.77810 1.17711 0.91038 0.79442 1.00196 1.21539 0.93337 0.96670 1.19316 1.21208 0.92840 0.92301 0.98552 1.20074 0.87185 1.02550 0.99963 1.23062 0.96969 0.97522 1.02581 1.22969 1.03051 1.01014 0.93451 1.77292 0.93624 1.12400 1.28938 1.48334 1.06306 1.01849 1.62257 1.21721 0.75818 1.03253 1.03019 0.93450 0.89934 0.93395 0.94537 0.93431 0.92693 0.76399 0.80578 0.86551 0.87545 0.88262 0.88510 0.88707 0.91081 0.89096 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.20 59.84 0.61 1.80 16 2 N -0.61 -12.45 2.86 -188.74 -0.54 -12.98 16 3 C 0.26 6.57 5.16 -5.19 -0.03 6.55 16 4 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 7 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.70 14.75 8.24 -86.92 -0.72 14.03 16 13 O -0.55 -13.69 13.05 5.28 0.07 -13.63 16 14 N -0.67 -10.95 5.28 -15.85 -0.08 -11.04 16 15 C 0.34 5.79 7.66 -153.15 -1.17 4.62 16 16 C -0.28 -5.16 8.95 -39.77 -0.36 -5.52 16 17 C 0.12 1.93 6.85 -82.44 -0.56 1.36 16 18 C -0.08 -1.03 6.33 -91.77 -0.58 -1.61 16 19 C -0.16 -2.01 10.02 -26.69 -0.27 -2.28 16 20 C -0.17 -1.94 10.24 -26.70 -0.27 -2.22 16 21 N -0.30 -4.92 12.56 33.65 0.42 -4.50 16 22 N -0.40 -5.91 4.02 -67.17 -0.27 -6.18 16 23 C 0.10 0.96 11.28 59.85 0.68 1.64 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.40 4.95 5.70 -40.82 -0.23 4.71 16 31 H 0.18 3.69 5.15 -52.49 -0.27 3.42 16 32 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.11 1.51 7.15 -51.93 -0.37 1.14 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.54 7.50 -51.93 -0.39 0.15 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -34.26 330.23 -8.12 -42.38 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.32 Total: 4.63 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.09 Total: 5.05 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.27 Total: -59.99 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.26 -8.12 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476625413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.611 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds