Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99934 * 2 1 4 4 C 1.50700 * 109.46912 * 270.00300 * 3 2 1 5 5 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99555 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00282 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47348 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47406 * 119.99805 * 8 6 4 11 11 H 1.48509 * 109.47027 * 239.99695 * 8 6 4 12 12 C 1.34777 * 120.00001 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99923 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00128 * 359.97438 * 12 2 1 15 15 C 1.39496 * 119.99901 * 180.28069 * 14 12 2 16 16 C 1.36105 * 126.21616 * 359.74062 * 15 14 12 17 17 C 1.39773 * 107.82739 * 179.97438 * 16 15 14 18 18 C 1.50699 * 125.83988 * 179.97438 * 17 16 15 19 19 C 1.53003 * 117.49733 * 343.74524 * 18 17 16 20 20 C 1.53000 * 117.49652 * 275.08973 * 18 17 16 21 21 N 1.30845 * 108.31860 * 0.02562 * 17 16 15 22 22 N 1.35245 * 126.21759 * 179.43510 * 15 14 12 23 23 C 1.46509 * 126.04254 * 0.02562 * 22 15 14 24 24 H 1.09001 * 109.47017 * 269.99778 * 1 2 3 25 25 H 1.08999 * 109.47701 * 29.99507 * 1 2 3 26 26 H 1.09005 * 109.47188 * 150.00374 * 1 2 3 27 27 H 1.08996 * 109.47092 * 30.00115 * 3 2 1 28 28 H 1.08998 * 109.47416 * 150.00325 * 3 2 1 29 29 H 0.96996 * 119.99369 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 2 31 31 H 1.08000 * 126.08899 * 0.02562 * 16 15 14 32 32 H 1.08992 * 115.55038 * 129.41985 * 18 17 16 33 33 H 1.08997 * 117.50208 * 0.02562 * 19 18 17 34 34 H 1.08998 * 117.49848 * 145.02437 * 19 18 17 35 35 H 1.09004 * 117.49772 * 214.98412 * 20 18 17 36 36 H 1.08997 * 117.49964 * 359.96942 * 20 18 17 37 37 H 1.08997 * 109.46957 * 89.99867 * 23 22 15 38 38 H 1.09002 * 109.46697 * 209.99729 * 23 22 15 39 39 H 1.08997 * 109.46491 * 329.99949 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4373 3.4171 -3.4340 9 1 2.8594 2.4171 -4.3674 10 1 2.8003 4.7382 -3.6666 11 1 4.8999 3.5248 -3.6680 12 6 2.1388 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1625 -3.5425 0.0049 16 6 3.5156 -3.6898 0.0054 17 6 3.7969 -5.0589 0.0122 18 6 5.1712 -5.6773 0.0145 19 6 6.3498 -4.7809 -0.3705 20 6 5.8640 -5.8641 -1.3368 21 7 2.6630 -5.7118 0.0149 22 7 1.6172 -4.7800 0.0163 23 6 0.1855 -5.0911 0.0247 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8901 -0.5138 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0309 4.4435 -0.8505 30 1 0.4950 -2.3344 0.0002 31 1 4.2425 -2.8910 0.0022 32 1 5.3441 -6.4358 0.7779 33 1 6.1314 -3.7438 -0.6251 34 1 7.2983 -4.9500 0.1393 35 1 6.4930 -6.7455 -1.4622 36 1 5.3257 -5.5403 -2.2275 37 1 -0.1739 -5.1758 -1.0009 38 1 0.0218 -6.0342 0.5461 39 1 -0.3562 -4.2948 0.5350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476625413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 72.208865 kcal Electronic energy + Delta-G solvation = -21577.912779 eV Core-core repulsion = 18330.292488 eV Total energy + Delta-G solvation = -3247.620290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.63116 -40.96627 -38.08473 -36.82839 -35.97267 -34.61891 -33.76589 -30.49443 -29.37506 -27.78739 -27.41234 -25.27578 -24.23031 -23.26706 -22.22948 -21.23774 -20.35663 -19.03905 -18.69186 -18.20484 -17.12889 -17.03237 -16.59469 -16.35222 -16.00866 -15.46718 -15.21413 -14.89291 -14.52428 -14.44022 -13.96370 -13.63606 -13.52336 -13.39252 -13.16095 -12.88497 -12.84397 -12.54991 -12.34904 -12.29017 -12.21167 -11.85725 -11.69020 -11.37522 -11.22182 -10.91471 -10.63080 -9.76609 -9.60745 -9.03893 -8.21355 -6.35507 0.73103 0.94938 1.37432 1.40535 1.51390 1.65083 1.91174 2.24657 2.40353 2.89117 2.95381 3.09127 3.41035 3.89700 4.01749 4.09067 4.21929 4.29438 4.37179 4.49859 4.57830 4.62459 4.64291 4.80697 4.81564 4.88125 4.94489 5.00338 5.14366 5.21941 5.23538 5.31218 5.52550 5.68897 5.79413 5.87749 6.05591 6.08522 6.66650 6.72862 6.94753 7.30537 7.50598 8.85523 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004757 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.139916 B = 5884.142557 C = 6953.662046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.275 3.725 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.700 3.300 13 O -0.600 6.600 14 N -0.646 5.646 15 C 0.328 3.672 16 C -0.310 4.310 17 C 0.112 3.888 18 C -0.092 4.092 19 C -0.167 4.167 20 C -0.151 4.151 21 N -0.307 5.307 22 N -0.388 5.388 23 C 0.088 3.912 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.003 0.997 29 H 0.267 0.733 30 H 0.421 0.579 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 -17.398 1.364 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.348 5.348 3 C 0.154 3.846 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.401 3.599 13 O -0.478 6.478 14 N -0.301 5.301 15 C 0.106 3.894 16 C -0.342 4.342 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.205 4.205 20 C -0.189 4.189 21 N -0.130 5.130 22 N -0.176 5.176 23 C -0.051 4.051 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.076 0.924 30 H 0.262 0.738 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.349 -18.269 1.424 19.743 hybrid contribution 0.070 1.653 -0.713 1.801 sum -7.279 -16.617 0.711 18.155 Atomic orbital electron populations 1.21980 0.77647 1.04192 1.03011 1.47329 1.08117 1.04338 1.74975 1.18781 0.91158 0.78537 0.96114 1.21720 1.36859 1.06450 0.93061 0.93036 1.25775 0.94896 0.96441 1.01658 1.70044 1.38891 1.14835 1.32796 0.85411 0.77853 0.78354 0.79420 1.19462 1.19334 1.20877 1.15781 0.85006 0.80509 0.78601 1.90832 1.13540 1.85690 1.57713 1.41801 1.10246 1.01090 1.76914 1.17653 0.90994 0.80378 1.00391 1.21436 0.94041 0.97196 1.21529 1.21556 0.94306 0.91387 0.98063 1.20290 0.85884 1.03267 1.01693 1.23057 0.97830 0.96129 1.03467 1.23040 1.02338 1.01544 0.92002 1.77230 0.93915 1.12889 1.28970 1.48686 1.07946 1.00394 1.60576 1.22260 0.72704 1.05225 1.04954 0.90486 0.90306 0.89686 0.94696 0.97853 0.92362 0.73831 0.83768 0.84520 0.90569 0.85741 0.85324 0.90198 0.89245 0.87462 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.97 10.20 127.77 1.30 3.27 16 2 N -0.61 -25.14 2.86 -869.32 -2.48 -27.62 16 3 C 0.28 14.42 5.16 85.63 0.44 14.86 16 4 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.70 29.81 8.24 179.05 1.48 31.29 16 13 O -0.60 -31.61 13.05 -4.01 -0.05 -31.66 16 14 N -0.65 -20.47 5.28 -322.31 -1.70 -22.17 16 15 C 0.33 11.16 7.66 131.31 1.01 12.16 16 16 C -0.31 -12.04 8.95 22.14 0.20 -11.84 16 17 C 0.11 3.73 6.85 43.08 0.29 4.02 16 18 C -0.09 -2.39 6.33 -11.54 -0.07 -2.46 16 19 C -0.17 -4.16 10.02 30.62 0.31 -3.85 16 20 C -0.15 -3.38 10.24 30.62 0.31 -3.07 16 21 N -0.31 -9.73 12.56 -47.44 -0.60 -10.33 16 22 N -0.39 -10.80 4.02 -366.43 -1.47 -12.28 16 23 C 0.09 1.32 11.28 127.77 1.44 2.77 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 26 H 0.08 1.62 6.36 -2.38 -0.02 1.60 16 27 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 28 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.42 9.17 5.70 -92.71 -0.53 8.65 16 31 H 0.14 6.59 5.15 -2.91 -0.01 6.58 16 32 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.08 2.37 7.15 -2.39 -0.02 2.35 16 34 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.01 7.50 -2.39 -0.02 1.00 16 Total: -1.00 -78.41 330.23 3.96 -74.45 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.54 Total: 19.89 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.41 Total: 17.86 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -5.97 Total: -127.12 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -78.41 3.96 -74.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476625413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.663 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds