Wall clock time and date at job start Wed Apr 15 2020 11:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34262 * 125.75708 * 2 1 4 4 C 1.38044 * 107.41751 * 180.24714 * 3 2 1 5 5 C 1.47428 * 126.41013 * 179.74018 * 4 3 2 6 6 O 1.21605 * 120.00522 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99642 * 180.02562 * 5 4 3 8 8 C 1.46509 * 120.00027 * 179.97438 * 7 5 4 9 9 C 1.53038 * 109.45707 * 275.02559 * 8 7 5 10 10 C 1.53192 * 109.30888 * 178.60000 * 9 8 7 11 11 N 1.46925 * 108.76757 * 54.65679 * 10 9 8 12 12 C 1.36933 * 120.63603 * 126.40377 * 11 10 9 13 13 H 1.08000 * 120.00067 * 331.82934 * 12 11 10 14 14 C 1.38813 * 120.00320 * 151.82304 * 12 11 10 15 15 N 1.31621 * 119.99869 * 343.07914 * 14 12 11 16 16 Si 1.86804 * 119.99872 * 163.06809 * 14 12 11 17 17 H 1.48497 * 109.47397 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46699 * 120.00633 * 16 14 12 19 19 H 1.48497 * 109.47044 * 239.99987 * 16 14 12 20 20 C 1.46932 * 118.73772 * 306.38121 * 11 10 9 21 21 C 1.53036 * 109.45973 * 154.96638 * 8 7 5 22 22 C 1.41286 * 107.17214 * 359.64314 * 4 3 2 23 23 N 1.30452 * 108.02562 * 0.36000 * 22 4 3 24 24 H 1.08997 * 109.47414 * 90.00303 * 1 2 3 25 25 H 1.09004 * 109.47530 * 210.00069 * 1 2 3 26 26 H 1.09003 * 109.47219 * 329.99701 * 1 2 3 27 27 H 1.08000 * 126.28480 * 359.97438 * 3 2 1 28 28 H 0.97003 * 120.00267 * 359.97438 * 7 5 4 29 29 H 1.09000 * 109.46005 * 34.99416 * 8 7 5 30 30 H 1.09000 * 109.49643 * 298.56375 * 9 8 7 31 31 H 1.08990 * 109.50027 * 58.65946 * 9 8 7 32 32 H 1.08996 * 109.60184 * 294.86745 * 10 9 8 33 33 H 1.09003 * 109.70328 * 174.49996 * 10 9 8 34 34 H 0.96999 * 119.99964 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.58345 * 293.82776 * 20 11 10 36 36 H 1.08996 * 109.70451 * 173.46648 * 20 11 10 37 37 H 1.08997 * 109.50373 * 301.33683 * 21 8 7 38 38 H 1.09003 * 109.49696 * 61.40839 * 21 8 7 39 39 H 1.07997 * 125.99080 * 180.11650 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0057 5 6 4.7637 1.5061 -0.0131 6 8 4.6525 2.7170 -0.0152 7 7 5.9876 0.9418 -0.0187 8 6 7.1841 1.7873 -0.0266 9 6 7.5197 2.1821 -1.4666 10 6 8.7504 3.0944 -1.4680 11 7 9.8431 2.4152 -0.7585 12 6 11.0662 2.2531 -1.3524 13 1 11.1398 2.1874 -2.4279 14 6 12.2116 2.1733 -0.5723 15 7 12.1844 2.5778 0.6800 16 14 13.7914 1.4915 -1.2995 17 1 13.5599 1.1093 -2.7157 18 1 14.8537 2.5271 -1.2340 19 1 14.2167 0.2967 -0.5271 20 6 9.5986 1.9136 0.6008 21 6 8.3582 1.0149 0.5790 22 6 3.5310 -0.7574 -0.0007 23 7 2.2826 -1.1357 -0.0004 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9165 2.1169 -0.0004 28 1 6.0764 -0.0242 -0.0174 29 1 6.9979 2.6855 0.5621 30 1 7.7304 1.2857 -2.0499 31 1 6.6741 2.7116 -1.9052 32 1 8.5124 4.0301 -0.9623 33 1 9.0539 3.3005 -2.4944 34 1 12.9848 2.5223 1.2250 35 1 9.4297 2.7532 1.2751 36 1 10.4602 1.3392 0.9410 37 1 8.1095 0.7136 1.5966 38 1 8.5607 0.1293 -0.0234 39 1 4.3918 -1.4097 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049154734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:47 Heat of formation + Delta-G solvation = 60.393318 kcal Electronic energy + Delta-G solvation = -21320.867390 eV Core-core repulsion = 18072.734739 eV Total energy + Delta-G solvation = -3248.132651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51551 -39.23235 -37.16157 -34.35702 -33.68150 -32.05001 -30.59151 -30.02401 -29.32050 -27.31950 -25.01179 -23.08897 -22.16348 -21.66096 -21.06135 -19.94557 -19.26648 -17.93875 -16.74695 -15.90256 -15.80946 -15.66255 -14.79436 -14.75290 -14.44029 -13.93133 -13.61314 -13.48766 -13.17945 -13.05729 -12.94944 -12.85497 -12.48966 -12.28668 -11.42274 -11.28439 -11.08485 -10.79637 -10.70617 -10.42701 -10.22170 -9.99406 -9.84018 -9.81287 -9.64903 -9.42486 -8.93080 -8.57090 -8.41094 -6.64927 -5.76810 -3.18818 1.38825 2.04346 2.09049 3.38506 3.46768 3.49098 3.52835 3.60614 4.19326 4.52004 4.54348 4.70324 4.73494 4.97938 5.05733 5.24807 5.37781 5.43465 5.54715 5.61965 5.67495 5.94702 6.13309 6.18711 6.33709 6.41281 6.54686 6.58918 6.63524 6.66097 6.85018 7.00570 7.04881 7.29055 7.36034 7.64654 7.81629 7.87506 8.47578 8.54261 9.23818 9.87150 10.44386 11.32120 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046908 B = 0.003228 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.769072 B = 8670.731516 C = 8841.793848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.368 5.368 3 C 0.124 3.876 4 C -0.288 4.288 5 C 0.590 3.410 6 O -0.553 6.553 7 N -0.719 5.719 8 C 0.153 3.847 9 C -0.139 4.139 10 C 0.147 3.853 11 N -0.593 5.593 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.289 1.289 20 C 0.175 3.825 21 C -0.147 4.147 22 C 0.082 3.918 23 N -0.301 5.301 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.188 0.812 28 H 0.394 0.606 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.253 0.747 35 H 0.021 0.979 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 -6.467 -0.114 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.147 5.147 3 C -0.027 4.027 4 C -0.303 4.303 5 C 0.377 3.623 6 O -0.432 6.432 7 N -0.368 5.368 8 C 0.050 3.950 9 C -0.179 4.179 10 C 0.021 3.979 11 N -0.316 5.316 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.216 1.216 20 C 0.048 3.952 21 C -0.187 4.187 22 C -0.106 4.106 23 N -0.121 5.121 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.205 0.795 28 H 0.227 0.773 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.220 -6.591 -0.008 23.177 hybrid contribution 1.350 -0.164 -0.299 1.393 sum -20.870 -6.755 -0.307 21.938 Atomic orbital electron populations 1.21972 0.73594 1.04921 1.03850 1.48410 1.07178 1.03919 1.55221 1.22984 0.90174 0.93674 0.95895 1.20423 0.93777 0.93574 1.22503 1.17230 0.82322 0.86916 0.75809 1.90764 1.86898 1.14149 1.51394 1.46108 1.05659 1.10208 1.74874 1.21027 0.82700 0.93903 0.97403 1.22372 0.99049 1.00727 0.95761 1.20877 0.87596 0.92874 0.96603 1.44106 1.08728 1.64451 1.14317 1.19237 0.83197 1.43974 0.91570 0.91621 1.25057 0.97531 1.00523 0.96644 1.70037 1.28160 1.48800 1.07801 0.86232 0.83551 0.78496 0.78547 1.20276 1.21767 1.21596 1.20736 0.93676 0.94567 0.86223 1.22536 0.96851 1.00189 0.99082 1.24100 0.95288 0.94069 0.97135 1.77170 1.01983 1.07827 1.25134 0.90273 0.88932 0.89035 0.79496 0.77269 0.89999 0.92349 0.92701 0.96190 0.92615 0.93686 0.96130 0.89070 0.92714 0.92172 0.79291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.44 59.84 0.68 1.14 16 2 N -0.37 -3.47 3.98 -67.60 -0.27 -3.74 16 3 C 0.12 1.29 11.30 -16.56 -0.19 1.10 16 4 C -0.29 -3.58 6.13 -105.07 -0.64 -4.23 16 5 C 0.59 9.09 7.78 -12.52 -0.10 8.99 16 6 O -0.55 -10.48 16.56 5.27 0.09 -10.39 16 7 N -0.72 -10.45 5.07 -54.84 -0.28 -10.72 16 8 C 0.15 2.71 2.42 -67.89 -0.16 2.54 16 9 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 10 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 11 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 12 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 13 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 14 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 15 N -0.90 -26.17 11.19 55.49 0.62 -25.55 16 16 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 21 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 22 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16 23 N -0.30 -3.45 12.50 30.86 0.39 -3.06 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.39 4.58 7.56 -40.82 -0.31 4.27 16 29 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.19 1.49 7.50 -52.49 -0.39 1.10 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -34.21 325.44 -6.87 -41.08 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.60 Total: 1.46 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.17 Total: 4.87 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.06 Total: -58.52 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.21 -6.87 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049154734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.475 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds