Wall clock time and date at job start Wed Apr 15 2020 11:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34262 * 125.75708 * 2 1 4 4 C 1.38044 * 107.41751 * 180.24714 * 3 2 1 5 5 C 1.47428 * 126.41013 * 179.74018 * 4 3 2 6 6 O 1.21605 * 120.00522 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99642 * 180.02562 * 5 4 3 8 8 C 1.46509 * 120.00027 * 179.97438 * 7 5 4 9 9 C 1.53038 * 109.45707 * 275.02559 * 8 7 5 10 10 C 1.53192 * 109.30888 * 178.60000 * 9 8 7 11 11 N 1.46925 * 108.76757 * 54.65679 * 10 9 8 12 12 C 1.36933 * 120.63603 * 126.40377 * 11 10 9 13 13 H 1.08000 * 120.00067 * 331.82934 * 12 11 10 14 14 C 1.38813 * 120.00320 * 151.82304 * 12 11 10 15 15 N 1.31621 * 119.99869 * 343.07914 * 14 12 11 16 16 Si 1.86804 * 119.99872 * 163.06809 * 14 12 11 17 17 H 1.48497 * 109.47397 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46699 * 120.00633 * 16 14 12 19 19 H 1.48497 * 109.47044 * 239.99987 * 16 14 12 20 20 C 1.46932 * 118.73772 * 306.38121 * 11 10 9 21 21 C 1.53036 * 109.45973 * 154.96638 * 8 7 5 22 22 C 1.41286 * 107.17214 * 359.64314 * 4 3 2 23 23 N 1.30452 * 108.02562 * 0.36000 * 22 4 3 24 24 H 1.08997 * 109.47414 * 90.00303 * 1 2 3 25 25 H 1.09004 * 109.47530 * 210.00069 * 1 2 3 26 26 H 1.09003 * 109.47219 * 329.99701 * 1 2 3 27 27 H 1.08000 * 126.28480 * 359.97438 * 3 2 1 28 28 H 0.97003 * 120.00267 * 359.97438 * 7 5 4 29 29 H 1.09000 * 109.46005 * 34.99416 * 8 7 5 30 30 H 1.09000 * 109.49643 * 298.56375 * 9 8 7 31 31 H 1.08990 * 109.50027 * 58.65946 * 9 8 7 32 32 H 1.08996 * 109.60184 * 294.86745 * 10 9 8 33 33 H 1.09003 * 109.70328 * 174.49996 * 10 9 8 34 34 H 0.96999 * 119.99964 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.58345 * 293.82776 * 20 11 10 36 36 H 1.08996 * 109.70451 * 173.46648 * 20 11 10 37 37 H 1.08997 * 109.50373 * 301.33683 * 21 8 7 38 38 H 1.09003 * 109.49696 * 61.40839 * 21 8 7 39 39 H 1.07997 * 125.99080 * 180.11650 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0057 5 6 4.7637 1.5061 -0.0131 6 8 4.6525 2.7170 -0.0152 7 7 5.9876 0.9418 -0.0187 8 6 7.1841 1.7873 -0.0266 9 6 7.5197 2.1821 -1.4666 10 6 8.7504 3.0944 -1.4680 11 7 9.8431 2.4152 -0.7585 12 6 11.0662 2.2531 -1.3524 13 1 11.1398 2.1874 -2.4279 14 6 12.2116 2.1733 -0.5723 15 7 12.1844 2.5778 0.6800 16 14 13.7914 1.4915 -1.2995 17 1 13.5599 1.1093 -2.7157 18 1 14.8537 2.5271 -1.2340 19 1 14.2167 0.2967 -0.5271 20 6 9.5986 1.9136 0.6008 21 6 8.3582 1.0149 0.5790 22 6 3.5310 -0.7574 -0.0007 23 7 2.2826 -1.1357 -0.0004 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9165 2.1169 -0.0004 28 1 6.0764 -0.0242 -0.0174 29 1 6.9979 2.6855 0.5621 30 1 7.7304 1.2857 -2.0499 31 1 6.6741 2.7116 -1.9052 32 1 8.5124 4.0301 -0.9623 33 1 9.0539 3.3005 -2.4944 34 1 12.9848 2.5223 1.2250 35 1 9.4297 2.7532 1.2751 36 1 10.4602 1.3392 0.9410 37 1 8.1095 0.7136 1.5966 38 1 8.5607 0.1293 -0.0234 39 1 4.3918 -1.4097 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049154734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:45 Heat of formation + Delta-G solvation = 36.528122 kcal Electronic energy + Delta-G solvation = -21321.902263 eV Core-core repulsion = 18072.734739 eV Total energy + Delta-G solvation = -3249.167523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32700 -40.53386 -38.77913 -35.94005 -34.47080 -33.75046 -31.87972 -31.49187 -30.85177 -28.07802 -26.77116 -24.41571 -23.83227 -23.00533 -21.91461 -21.18104 -20.76222 -19.11824 -18.47440 -17.13620 -16.78513 -16.66718 -16.57570 -15.72294 -15.58072 -15.43184 -15.31304 -14.91918 -14.61518 -14.23708 -14.10741 -13.81497 -13.48764 -13.42840 -13.17613 -12.99898 -12.61016 -12.50145 -12.24225 -12.04980 -11.97196 -11.84257 -11.51637 -11.31096 -10.83647 -10.57486 -10.54682 -10.04335 -9.60927 -8.68760 -7.86089 -5.31743 0.55314 1.17016 1.46177 1.49035 1.50805 1.61653 2.35147 2.51388 2.53598 3.29814 3.53548 3.68937 3.82911 3.92940 4.08291 4.16458 4.19062 4.37975 4.43603 4.49751 4.58736 4.68343 4.70760 4.72819 4.85773 4.90986 5.08985 5.09980 5.19247 5.33237 5.40297 5.50269 5.63030 5.67055 5.74140 5.88048 6.40919 6.50001 6.73507 7.16372 7.38212 7.85982 8.39053 9.21165 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046908 B = 0.003228 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.769072 B = 8670.731516 C = 8841.793848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.362 5.362 3 C 0.132 3.868 4 C -0.316 4.316 5 C 0.592 3.408 6 O -0.595 6.595 7 N -0.708 5.708 8 C 0.164 3.836 9 C -0.124 4.124 10 C 0.145 3.855 11 N -0.609 5.609 12 C -0.262 4.262 13 H 0.067 0.933 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.294 1.294 19 H -0.288 1.288 20 C 0.179 3.821 21 C -0.129 4.129 22 C 0.086 3.914 23 N -0.325 5.325 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.207 0.793 28 H 0.411 0.589 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.007 0.993 33 H 0.057 0.943 34 H 0.251 0.749 35 H -0.006 1.006 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.033 -8.059 -0.811 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.141 5.141 3 C -0.021 4.021 4 C -0.331 4.331 5 C 0.381 3.619 6 O -0.477 6.477 7 N -0.358 5.358 8 C 0.060 3.940 9 C -0.164 4.164 10 C 0.019 3.981 11 N -0.333 5.333 12 C -0.392 4.392 13 H 0.085 0.915 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.222 1.222 19 H -0.214 1.214 20 C 0.053 3.947 21 C -0.168 4.168 22 C -0.101 4.101 23 N -0.145 5.145 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.136 0.864 27 H 0.223 0.777 28 H 0.248 0.752 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.012 0.988 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -23.975 -8.239 -0.719 25.361 hybrid contribution 1.754 0.392 -0.082 1.799 sum -22.221 -7.847 -0.801 23.580 Atomic orbital electron populations 1.22395 0.70925 1.06627 1.05351 1.48790 1.08637 1.03074 1.53555 1.23311 0.89854 0.94732 0.94248 1.20238 0.93255 0.94041 1.25534 1.17596 0.83022 0.86639 0.74609 1.90742 1.87455 1.16063 1.53431 1.45802 1.04522 1.10759 1.74706 1.20629 0.83677 0.93475 0.96254 1.22170 0.97385 1.00234 0.96575 1.20966 0.88100 0.92982 0.96092 1.44364 1.08953 1.65189 1.14801 1.19554 0.84316 1.43454 0.91865 0.91501 1.25822 1.00590 1.01095 0.97074 1.70193 1.28797 1.50132 1.09081 0.85188 0.79425 0.77425 0.78267 1.19087 1.22158 1.21410 1.20560 0.94954 0.94077 0.85143 1.22259 0.94553 0.99168 1.00846 1.24454 0.95962 0.93614 0.96082 1.77140 1.02395 1.09024 1.25945 0.88831 0.88260 0.86407 0.77657 0.75239 0.92404 0.91513 0.92221 0.97471 0.92430 0.94032 0.98791 0.91871 0.90485 0.91021 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.44 127.77 1.46 2.00 16 2 N -0.36 -5.92 3.98 -367.79 -1.46 -7.38 16 3 C 0.13 2.46 11.30 84.28 0.95 3.41 16 4 C -0.32 -7.29 6.13 -20.15 -0.12 -7.41 16 5 C 0.59 17.53 7.78 86.66 0.67 18.20 16 6 O -0.59 -22.33 16.56 -4.05 -0.07 -22.40 16 7 N -0.71 -19.35 5.07 -445.66 -2.26 -21.61 16 8 C 0.16 5.69 2.42 45.01 0.11 5.80 16 9 C -0.12 -4.50 5.65 30.67 0.17 -4.32 16 10 C 0.14 6.36 6.52 86.36 0.56 6.92 16 11 N -0.61 -31.07 2.99 -699.08 -2.09 -33.16 16 12 C -0.26 -14.47 9.58 84.03 0.81 -13.66 16 13 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 14 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 15 N -0.94 -55.48 11.19 21.65 0.24 -55.23 16 16 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 C 0.18 8.61 5.30 86.36 0.46 9.07 16 21 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 22 C 0.09 1.68 11.50 85.65 0.99 2.66 16 23 N -0.32 -6.70 12.50 -56.28 -0.70 -7.40 16 24 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.21 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.41 8.48 7.56 -92.71 -0.70 7.78 16 29 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 36 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.21 2.75 7.50 -2.91 -0.02 2.72 16 Total: -1.00 -74.83 325.44 2.69 -72.14 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.35 Total: 12.48 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.65 Total: 15.82 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.28 Total: -124.79 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.83 2.69 -72.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049154734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.670 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds