Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28442 * 125.19008 * 2 1 4 4 C 1.30859 * 110.92686 * 179.97438 * 3 2 1 5 5 C 1.39671 * 107.86243 * 359.77139 * 4 3 2 6 6 C 1.36592 * 125.19025 * 179.97438 * 2 1 3 7 7 C 1.47163 * 126.88452 * 359.97438 * 6 2 1 8 8 O 1.21624 * 120.00072 * 351.84185 * 7 6 2 9 9 N 1.34775 * 120.00254 * 171.83991 * 7 6 2 10 10 C 1.47435 * 125.64690 * 357.47271 * 9 7 6 11 11 C 1.54911 * 104.82889 * 204.14708 * 10 9 7 12 12 C 1.55153 * 101.58247 * 322.98700 * 11 10 9 13 13 C 1.47024 * 125.65123 * 177.49033 * 9 7 6 14 14 H 1.08997 * 110.00845 * 59.43148 * 13 9 7 15 15 C 1.52997 * 109.88259 * 298.34311 * 13 9 7 16 16 N 1.46495 * 109.47484 * 76.85166 * 15 13 9 17 17 C 1.36934 * 120.00220 * 187.44059 * 16 15 13 18 18 H 1.08003 * 120.00118 * 7.65209 * 17 16 15 19 19 C 1.38813 * 120.00358 * 187.64183 * 17 16 15 20 20 N 1.31616 * 120.00362 * 189.03511 * 19 17 16 21 21 Si 1.86807 * 119.99656 * 9.03500 * 19 17 16 22 22 H 1.48502 * 109.46875 * 268.32116 * 21 19 17 23 23 H 1.48497 * 109.46834 * 28.32356 * 21 19 17 24 24 H 1.48496 * 109.46886 * 148.32540 * 21 19 17 25 25 H 1.08998 * 109.47234 * 264.20452 * 1 2 3 26 26 H 1.09001 * 109.46614 * 24.20464 * 1 2 3 27 27 H 1.08997 * 109.46685 * 144.20350 * 1 2 3 28 28 H 1.08009 * 126.06965 * 179.97438 * 4 3 2 29 29 H 1.07999 * 127.32286 * 180.22721 * 5 4 3 30 30 H 1.08994 * 110.36320 * 85.30934 * 10 9 7 31 31 H 1.09000 * 110.45600 * 323.03223 * 10 9 7 32 32 H 1.08999 * 111.00065 * 204.91576 * 11 10 9 33 33 H 1.09002 * 111.00676 * 81.06492 * 11 10 9 34 34 H 1.08999 * 110.72745 * 277.14003 * 12 11 10 35 35 H 1.09002 * 110.71999 * 153.86323 * 12 11 10 36 36 H 1.09000 * 109.47005 * 316.85141 * 15 13 9 37 37 H 1.09007 * 109.47012 * 196.85604 * 15 13 9 38 38 H 0.96998 * 120.00080 * 7.44991 * 16 15 13 39 39 H 0.96997 * 119.99943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5612 -0.6667 0.0062 6 6 2.2522 -1.1163 0.0005 7 6 1.7993 -2.5165 0.0017 8 8 0.6201 -2.7741 0.1517 9 7 2.6911 -3.5134 -0.1636 10 6 4.1351 -3.3429 -0.4071 11 6 4.5734 -4.6460 -1.1209 12 6 3.7048 -5.7065 -0.3942 13 6 2.3850 -4.9511 -0.1314 14 1 1.6576 -5.1950 -0.9056 15 6 1.8306 -5.3343 1.2422 16 7 0.4344 -4.9025 1.3432 17 6 -0.2279 -5.0004 2.5377 18 1 0.3100 -5.2780 3.4323 19 6 -1.5905 -4.7426 2.5991 20 7 -2.1930 -4.6614 3.7665 21 14 -2.5690 -4.5109 1.0248 22 1 -2.6006 -3.0695 0.6693 23 1 -1.9283 -5.2779 -0.0736 24 1 -3.9560 -5.0013 1.2275 25 1 -0.3633 -0.1038 1.0224 26 1 -0.3632 0.9374 -0.4214 27 1 -0.3632 -0.8335 -0.6011 28 1 4.3049 1.4167 0.0003 29 1 4.4594 -1.2662 0.0116 30 1 4.6681 -3.2296 0.5368 31 1 4.3139 -2.4802 -1.0490 32 1 5.6352 -4.8381 -0.9660 33 1 4.3358 -4.6082 -2.1840 34 1 4.1696 -6.0086 0.5443 35 1 3.5332 -6.5703 -1.0365 36 1 2.4187 -4.8474 2.0201 37 1 1.8866 -6.4157 1.3678 38 1 -0.0210 -4.5474 0.5639 39 1 -3.1452 -4.4817 3.8093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723885834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = 88.091468 kcal Electronic energy + Delta-G solvation = -22703.052152 eV Core-core repulsion = 19456.120583 eV Total energy + Delta-G solvation = -3246.931569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44991 -39.86638 -37.23503 -34.55012 -33.32557 -32.09499 -31.40796 -30.31536 -29.09869 -27.03510 -25.35714 -23.97093 -22.23525 -21.91450 -21.19661 -20.33170 -19.15768 -17.68939 -16.91519 -16.67587 -16.05560 -15.85788 -15.06705 -14.44625 -14.13620 -14.04972 -13.79285 -13.75978 -13.06102 -12.97958 -12.69365 -12.66194 -12.48957 -12.31883 -12.07295 -11.70980 -11.57817 -11.24288 -10.81676 -10.67158 -10.60490 -10.41976 -10.12127 -9.68074 -9.31380 -9.13631 -8.95529 -8.70578 -8.39525 -6.97138 -5.61605 -2.91804 1.43189 2.43259 2.66311 3.19165 3.45924 3.55476 3.59429 3.63400 4.36131 4.46857 4.60711 4.78653 4.80537 4.84191 5.16336 5.20908 5.23653 5.31609 5.40564 5.45277 5.60594 5.62851 5.66904 5.70335 5.73805 5.77240 5.87040 5.88425 6.05207 6.19179 6.25676 6.50897 6.67768 6.77205 6.80149 7.63120 8.09085 8.16544 8.41930 8.59918 9.46886 10.18700 10.41174 11.57223 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.008012 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.143431 B = 3493.789491 C = 4964.583123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.255 5.255 3 N -0.284 5.284 4 C -0.009 4.009 5 C -0.210 4.210 6 C -0.019 4.019 7 C 0.597 3.403 8 O -0.496 6.496 9 N -0.600 5.600 10 C 0.088 3.912 11 C -0.133 4.133 12 C -0.124 4.124 13 C 0.129 3.871 14 H 0.076 0.924 15 C 0.149 3.851 16 N -0.743 5.743 17 C -0.234 4.234 18 H 0.081 0.919 19 C 0.005 3.995 20 N -0.938 5.938 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.279 1.279 24 H -0.299 1.299 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.375 0.625 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.477 5.568 -12.755 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.042 5.042 3 N -0.118 5.118 4 C -0.184 4.184 5 C -0.238 4.238 6 C -0.148 4.148 7 C 0.383 3.617 8 O -0.369 6.369 9 N -0.336 5.336 10 C -0.034 4.034 11 C -0.171 4.171 12 C -0.162 4.162 13 C 0.026 3.974 14 H 0.094 0.906 15 C 0.020 3.980 16 N -0.393 5.393 17 C -0.364 4.364 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.587 5.587 21 Si 0.718 3.282 22 H -0.210 1.210 23 H -0.205 1.205 24 H -0.227 1.227 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.201 0.799 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.213 0.787 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.786 6.363 -12.445 20.347 hybrid contribution -0.181 -0.355 -0.811 0.903 sum 14.605 6.008 -13.256 20.618 Atomic orbital electron populations 1.22330 0.72206 1.04963 1.05734 1.45624 1.08012 1.01695 1.48882 1.73181 1.04394 1.13836 1.20345 1.23529 0.93458 0.95018 1.06427 1.22645 0.96046 0.95500 1.09618 1.21441 0.91364 0.89757 1.12256 1.16444 0.85206 0.82228 0.77817 1.90806 1.15842 1.82922 1.47357 1.48038 1.07895 1.05841 1.71840 1.22732 0.81568 0.98980 1.00160 1.22795 1.00151 0.94319 0.99878 1.22647 0.94340 0.97781 1.01467 1.21990 0.96932 0.78692 0.99760 0.90615 1.21005 0.87564 0.96930 0.92466 1.42905 1.08477 1.76606 1.11315 1.19002 0.91288 1.39206 0.86884 0.90074 1.24620 0.96476 1.01800 0.96083 1.69756 1.09957 1.56508 1.22506 0.86433 0.79050 0.78107 0.84594 1.21048 1.20518 1.22652 0.88994 0.88963 0.87786 0.79920 0.81527 0.90988 0.89642 0.89761 0.90664 0.89967 0.89886 0.95250 0.95377 0.78704 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.56 59.85 0.63 1.94 16 2 N -0.25 -4.12 3.75 -63.88 -0.24 -4.36 16 3 N -0.28 -4.32 11.90 30.59 0.36 -3.96 16 4 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 5 C -0.21 -2.66 9.25 -38.99 -0.36 -3.02 16 6 C -0.02 -0.31 6.88 -82.06 -0.56 -0.87 16 7 C 0.60 10.89 7.59 -12.64 -0.10 10.79 16 8 O -0.50 -11.08 11.48 5.26 0.06 -11.02 16 9 N -0.60 -9.10 3.06 -164.37 -0.50 -9.60 16 10 C 0.09 0.89 5.18 -2.52 -0.01 0.88 16 11 C -0.13 -1.08 7.08 -24.58 -0.17 -1.25 16 12 C -0.12 -1.29 6.43 -24.90 -0.16 -1.45 16 13 C 0.13 2.01 3.04 -66.95 -0.20 1.80 16 14 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 15 C 0.15 3.01 5.61 -4.05 -0.02 2.99 16 16 N -0.74 -19.21 4.03 -59.91 -0.24 -19.45 16 17 C -0.23 -7.10 10.45 -15.06 -0.16 -7.26 16 18 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.94 -31.11 13.97 55.49 0.78 -30.33 16 21 Si 0.89 24.39 27.53 -169.99 -4.68 19.71 16 22 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.28 -7.45 6.91 56.52 0.39 -7.06 16 24 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 25 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.10 1.64 6.86 -51.93 -0.36 1.28 16 28 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.17 1.57 5.01 -52.49 -0.26 1.31 16 30 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.09 0.75 5.72 -51.93 -0.30 0.45 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.37 9.84 3.45 -40.82 -0.14 9.70 16 39 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -37.83 312.67 -6.42 -44.25 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.24 Total: 5.75 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.43 Total: 4.31 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: 0.15 Total: -67.71 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.68 Total: 19.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.83 -6.42 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -37.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds