Wall clock time and date at job start Wed Apr 15 2020 11:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28442 * 125.19008 * 2 1 4 4 C 1.30859 * 110.92686 * 179.97438 * 3 2 1 5 5 C 1.39671 * 107.86243 * 359.77139 * 4 3 2 6 6 C 1.36592 * 125.19025 * 179.97438 * 2 1 3 7 7 C 1.47163 * 126.88452 * 359.97438 * 6 2 1 8 8 O 1.21624 * 120.00072 * 351.84185 * 7 6 2 9 9 N 1.34775 * 120.00254 * 171.83991 * 7 6 2 10 10 C 1.47435 * 125.64690 * 357.47271 * 9 7 6 11 11 C 1.54911 * 104.82889 * 204.14708 * 10 9 7 12 12 C 1.55153 * 101.58247 * 322.98700 * 11 10 9 13 13 C 1.47024 * 125.65123 * 177.49033 * 9 7 6 14 14 H 1.08997 * 110.00845 * 59.43148 * 13 9 7 15 15 C 1.52997 * 109.88259 * 298.34311 * 13 9 7 16 16 N 1.46495 * 109.47484 * 76.85166 * 15 13 9 17 17 C 1.36934 * 120.00220 * 187.44059 * 16 15 13 18 18 H 1.08003 * 120.00118 * 7.65209 * 17 16 15 19 19 C 1.38813 * 120.00358 * 187.64183 * 17 16 15 20 20 N 1.31616 * 120.00362 * 189.03511 * 19 17 16 21 21 Si 1.86807 * 119.99656 * 9.03500 * 19 17 16 22 22 H 1.48502 * 109.46875 * 268.32116 * 21 19 17 23 23 H 1.48497 * 109.46834 * 28.32356 * 21 19 17 24 24 H 1.48496 * 109.46886 * 148.32540 * 21 19 17 25 25 H 1.08998 * 109.47234 * 264.20452 * 1 2 3 26 26 H 1.09001 * 109.46614 * 24.20464 * 1 2 3 27 27 H 1.08997 * 109.46685 * 144.20350 * 1 2 3 28 28 H 1.08009 * 126.06965 * 179.97438 * 4 3 2 29 29 H 1.07999 * 127.32286 * 180.22721 * 5 4 3 30 30 H 1.08994 * 110.36320 * 85.30934 * 10 9 7 31 31 H 1.09000 * 110.45600 * 323.03223 * 10 9 7 32 32 H 1.08999 * 111.00065 * 204.91576 * 11 10 9 33 33 H 1.09002 * 111.00676 * 81.06492 * 11 10 9 34 34 H 1.08999 * 110.72745 * 277.14003 * 12 11 10 35 35 H 1.09002 * 110.71999 * 153.86323 * 12 11 10 36 36 H 1.09000 * 109.47005 * 316.85141 * 15 13 9 37 37 H 1.09007 * 109.47012 * 196.85604 * 15 13 9 38 38 H 0.96998 * 120.00080 * 7.44991 * 16 15 13 39 39 H 0.96997 * 119.99943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5612 -0.6667 0.0062 6 6 2.2522 -1.1163 0.0005 7 6 1.7993 -2.5165 0.0017 8 8 0.6201 -2.7741 0.1517 9 7 2.6911 -3.5134 -0.1636 10 6 4.1351 -3.3429 -0.4071 11 6 4.5734 -4.6460 -1.1209 12 6 3.7048 -5.7065 -0.3942 13 6 2.3850 -4.9511 -0.1314 14 1 1.6576 -5.1950 -0.9056 15 6 1.8306 -5.3343 1.2422 16 7 0.4344 -4.9025 1.3432 17 6 -0.2279 -5.0004 2.5377 18 1 0.3100 -5.2780 3.4323 19 6 -1.5905 -4.7426 2.5991 20 7 -2.1930 -4.6614 3.7665 21 14 -2.5690 -4.5109 1.0248 22 1 -2.6006 -3.0695 0.6693 23 1 -1.9283 -5.2779 -0.0736 24 1 -3.9560 -5.0013 1.2275 25 1 -0.3633 -0.1038 1.0224 26 1 -0.3632 0.9374 -0.4214 27 1 -0.3632 -0.8335 -0.6011 28 1 4.3049 1.4167 0.0003 29 1 4.4594 -1.2662 0.0116 30 1 4.6681 -3.2296 0.5368 31 1 4.3139 -2.4802 -1.0490 32 1 5.6352 -4.8381 -0.9660 33 1 4.3358 -4.6082 -2.1840 34 1 4.1696 -6.0086 0.5443 35 1 3.5332 -6.5703 -1.0365 36 1 2.4187 -4.8474 2.0201 37 1 1.8866 -6.4157 1.3678 38 1 -0.0210 -4.5474 0.5639 39 1 -3.1452 -4.4817 3.8093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723885834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:42 Heat of formation + Delta-G solvation = 60.031938 kcal Electronic energy + Delta-G solvation = -22704.268904 eV Core-core repulsion = 19456.120583 eV Total energy + Delta-G solvation = -3248.148321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.53922 -41.05847 -38.47687 -36.48675 -34.43968 -33.73084 -32.98903 -31.48756 -30.52695 -28.14558 -26.84841 -25.33806 -23.91846 -22.93321 -22.41162 -21.47385 -20.41485 -19.67025 -18.18747 -17.81637 -17.30111 -16.99211 -16.61853 -16.35094 -15.51891 -15.23563 -15.08734 -14.84688 -14.67823 -14.36961 -14.05362 -13.84272 -13.76760 -13.56249 -13.40457 -13.36030 -13.02996 -12.74489 -12.27696 -12.10619 -11.94673 -11.77717 -11.55876 -11.53665 -10.97895 -10.96264 -10.30118 -10.02156 -9.66283 -9.16257 -8.05362 -5.31087 0.25665 1.29839 1.32690 1.36619 1.43857 1.66539 2.05748 2.21281 2.48899 3.25870 3.35766 3.55100 3.60889 3.71790 3.96528 4.13834 4.18057 4.19743 4.24295 4.30782 4.33627 4.51022 4.58410 4.66204 4.74827 4.79062 4.83962 4.88854 5.03109 5.13071 5.20440 5.41646 5.45661 5.54413 5.70303 5.73619 6.20770 6.44993 6.98368 7.08201 7.21242 7.96148 8.16323 9.17029 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.008012 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.143431 B = 3493.789491 C = 4964.583123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.274 5.274 3 N -0.305 5.305 4 C -0.002 4.002 5 C -0.186 4.186 6 C -0.053 4.053 7 C 0.585 3.415 8 O -0.554 6.554 9 N -0.599 5.599 10 C 0.077 3.923 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.130 3.870 14 H 0.061 0.939 15 C 0.143 3.857 16 N -0.748 5.748 17 C -0.222 4.222 18 H 0.050 0.950 19 C -0.059 4.059 20 N -0.984 5.984 21 Si 0.954 3.046 22 H -0.284 1.284 23 H -0.268 1.268 24 H -0.296 1.296 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.226 0.774 29 H 0.203 0.797 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.017 0.983 37 H 0.038 0.962 38 H 0.374 0.626 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.951 5.907 -15.109 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.062 5.062 3 N -0.138 5.138 4 C -0.177 4.177 5 C -0.214 4.214 6 C -0.181 4.181 7 C 0.373 3.627 8 O -0.431 6.431 9 N -0.333 5.333 10 C -0.044 4.044 11 C -0.155 4.155 12 C -0.154 4.154 13 C 0.027 3.973 14 H 0.079 0.921 15 C 0.016 3.984 16 N -0.397 5.397 17 C -0.354 4.354 18 H 0.068 0.932 19 C -0.250 4.250 20 N -0.635 5.635 21 Si 0.783 3.217 22 H -0.210 1.210 23 H -0.193 1.193 24 H -0.223 1.223 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.243 0.757 29 H 0.220 0.780 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.212 0.788 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.355 6.681 -14.839 24.530 hybrid contribution -1.068 -0.441 -0.017 1.156 sum 17.287 6.240 -14.856 23.632 Atomic orbital electron populations 1.22218 0.72645 1.05753 1.04293 1.45710 1.08187 1.02046 1.50228 1.73173 1.05698 1.13916 1.20975 1.24316 0.93454 0.95715 1.04246 1.23117 0.95609 0.95927 1.06790 1.21540 0.92948 0.88941 1.14697 1.16921 0.84973 0.83618 0.77211 1.90745 1.18208 1.83877 1.50311 1.48198 1.09848 1.05052 1.70218 1.23135 0.78375 1.01225 1.01643 1.22820 1.01549 0.91494 0.99648 1.22669 0.91572 0.98421 1.02697 1.21988 0.99494 0.79940 0.95914 0.92097 1.21255 0.84622 0.97084 0.95461 1.43006 1.10546 1.76640 1.09552 1.19039 0.91435 1.37270 0.87641 0.93228 1.25339 0.97695 1.02831 0.99152 1.69904 1.10185 1.58726 1.24715 0.85379 0.77434 0.77999 0.80915 1.21048 1.19268 1.22268 0.91111 0.86255 0.89310 0.75743 0.78029 0.89599 0.87744 0.86167 0.89845 0.89253 0.88046 0.96446 0.94445 0.78768 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.56 127.77 1.35 4.19 16 2 N -0.27 -8.84 3.75 -356.02 -1.33 -10.18 16 3 N -0.30 -8.79 11.90 -57.14 -0.68 -9.47 16 4 C 0.00 -0.04 12.03 85.18 1.02 0.99 16 5 C -0.19 -4.11 9.25 22.66 0.21 -3.90 16 6 C -0.05 -1.67 6.88 40.79 0.28 -1.39 16 7 C 0.58 21.40 7.59 86.59 0.66 22.05 16 8 O -0.55 -25.62 11.48 -4.11 -0.05 -25.67 16 9 N -0.60 -17.22 3.06 -792.18 -2.43 -19.65 16 10 C 0.08 1.23 5.18 86.85 0.45 1.68 16 11 C -0.12 -1.29 7.08 31.99 0.23 -1.06 16 12 C -0.12 -1.96 6.43 31.78 0.20 -1.76 16 13 C 0.13 3.86 3.04 45.34 0.14 4.00 16 14 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 15 C 0.14 5.80 5.61 86.38 0.48 6.28 16 16 N -0.75 -39.55 4.03 -343.46 -1.38 -40.93 16 17 C -0.22 -14.02 10.45 84.03 0.88 -13.14 16 18 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 19 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 20 N -0.98 -67.64 13.97 21.65 0.30 -67.34 16 21 Si 0.95 52.33 27.53 68.60 1.89 54.22 16 22 H -0.28 -15.45 7.11 99.48 0.71 -14.75 16 23 H -0.27 -13.96 6.91 99.48 0.69 -13.27 16 24 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 25 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.09 3.00 6.86 -2.39 -0.02 2.98 16 28 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.20 2.78 5.01 -2.91 -0.01 2.77 16 30 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 31 H 0.10 1.31 5.72 -2.39 -0.01 1.29 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.04 1.46 8.07 -2.38 -0.02 1.44 16 38 H 0.37 20.03 3.45 -92.71 -0.32 19.71 16 39 H 0.26 16.71 8.31 -92.71 -0.77 15.94 16 Total: -1.00 -87.54 312.67 3.41 -84.13 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.73 Total: 20.29 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.37 Total: 14.59 kcal Atomic # 7 Polarization: -142.05 SS G_CDS: -5.52 Total: -147.57 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.89 Total: 54.22 kcal Total: -87.54 3.41 -84.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723885834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.162 kcal (2) G-P(sol) polarization free energy of solvation -87.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds