Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99941 * 2 1 4 4 H 1.08003 * 119.99808 * 198.75665 * 3 2 1 5 5 C 1.38810 * 120.00213 * 18.75375 * 3 2 1 6 6 N 1.31612 * 120.00248 * 17.78885 * 5 3 2 7 7 Si 1.86802 * 119.99953 * 197.79459 * 5 3 2 8 8 H 1.48500 * 109.47399 * 89.99662 * 7 5 3 9 9 H 1.48500 * 109.46967 * 209.99983 * 7 5 3 10 10 H 1.48498 * 109.47075 * 329.99744 * 7 5 3 11 11 C 1.46496 * 119.99891 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.40202 * 179.97438 * 11 2 1 13 13 C 1.53072 * 109.40341 * 299.82795 * 11 2 1 14 14 C 1.53178 * 108.51517 * 169.01848 * 13 11 2 15 15 C 1.52930 * 108.62484 * 292.41558 * 14 13 11 16 16 N 1.45746 * 110.49001 * 50.74851 * 15 14 13 17 17 C 1.40160 * 117.94776 * 160.92328 * 16 15 14 18 18 C 1.40410 * 125.97604 * 192.18949 * 17 16 15 19 19 C 1.35232 * 107.86812 * 179.82850 * 18 17 16 20 20 N 1.34970 * 107.86238 * 0.42732 * 19 18 17 21 21 C 1.46498 * 125.97457 * 179.76206 * 20 19 18 22 22 N 1.31222 * 125.97243 * 12.49591 * 17 16 15 23 23 C 1.33359 * 124.10674 * 340.94990 * 16 15 14 24 24 O 1.21298 * 118.24337 * 182.20285 * 23 16 15 25 25 H 1.09009 * 109.46840 * 272.54649 * 1 2 3 26 26 H 1.08992 * 109.47115 * 32.54474 * 1 2 3 27 27 H 1.09002 * 109.47173 * 152.55006 * 1 2 3 28 28 H 0.97000 * 120.00632 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.67371 * 288.67439 * 13 11 2 30 30 H 1.09001 * 109.67223 * 49.20999 * 13 11 2 31 31 H 1.08989 * 109.63060 * 172.67111 * 14 13 11 32 32 H 1.09001 * 109.75535 * 52.23197 * 14 13 11 33 33 H 1.08991 * 109.29992 * 290.43604 * 15 14 13 34 34 H 1.09000 * 109.12613 * 170.95494 * 15 14 13 35 35 H 1.08008 * 126.06524 * 359.97438 * 18 17 16 36 36 H 1.08006 * 126.06879 * 180.15950 * 19 18 17 37 37 H 1.09001 * 109.47233 * 269.98144 * 21 20 19 38 38 H 1.08993 * 109.47212 * 29.98814 * 21 20 19 39 39 H 1.09000 * 109.46572 * 149.98355 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1867 1.2107 -0.3008 5 6 1.5109 2.3561 0.3865 6 7 0.3901 2.2980 1.0739 7 14 2.2421 4.0136 -0.0693 8 1 1.7040 4.4475 -1.3836 9 1 1.8835 5.0146 0.9674 10 1 3.7200 3.8963 -0.1538 11 6 2.1975 -1.2687 0.0006 12 1 3.2689 -1.0682 0.0000 13 6 1.8298 -2.0676 1.2534 14 6 2.3816 -3.4887 1.1035 15 6 1.6192 -4.1926 -0.0198 16 7 1.6013 -3.3662 -1.2202 17 6 1.3196 -3.9902 -2.4432 18 6 1.4909 -3.4241 -3.7167 19 6 1.1115 -4.3429 -4.6336 20 7 0.7056 -5.4463 -3.9706 21 6 0.2076 -6.6820 -4.5799 22 7 0.8444 -5.2035 -2.5981 23 6 1.8368 -2.0536 -1.2279 24 8 1.7546 -1.4618 -2.2836 25 1 -0.3633 0.0457 1.0267 26 1 -0.3633 0.8662 -0.5528 27 1 -0.3633 -0.9120 -0.4737 28 1 -0.0561 3.1157 1.3443 29 1 2.2702 -1.5958 2.1318 30 1 0.7457 -2.1039 1.3604 31 1 2.2446 -4.0350 2.0366 32 1 3.4423 -3.4478 0.8559 33 1 0.5954 -4.3813 0.3028 34 1 2.1073 -5.1414 -0.2428 35 1 1.8622 -2.4319 -3.9268 36 1 1.1262 -4.2149 -5.7059 37 1 -0.8739 -6.6177 -4.7000 38 1 0.6740 -6.8197 -5.5553 39 1 0.4522 -7.5279 -3.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173275881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 94.100585 kcal Electronic energy + Delta-G solvation = -22364.015875 eV Core-core repulsion = 19117.344881 eV Total energy + Delta-G solvation = -3246.670994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26872 -39.71745 -36.10861 -35.75747 -33.50625 -31.86043 -30.69604 -29.82175 -28.13998 -26.41575 -26.00284 -24.29243 -22.72272 -21.69866 -20.67952 -20.06010 -18.12813 -17.10861 -16.77946 -16.00546 -15.75828 -15.72085 -15.14707 -14.53965 -13.95790 -13.90941 -13.67543 -13.42348 -13.07141 -12.74925 -12.64636 -12.58524 -12.46609 -12.16927 -11.41788 -11.04377 -10.92036 -10.88556 -10.73323 -10.50219 -10.42069 -10.40249 -10.01718 -9.90604 -9.81245 -9.00929 -8.57991 -8.48011 -7.82190 -6.86673 -5.75208 -3.15102 1.98102 2.37712 2.85065 3.35079 3.44323 3.49636 3.50166 3.58403 4.51030 4.59366 4.87361 5.01528 5.04117 5.08838 5.13320 5.25886 5.30603 5.44228 5.52873 5.65303 5.78566 5.83172 5.95088 6.02457 6.09758 6.16064 6.24211 6.45030 6.62092 6.72819 6.80930 7.15750 7.28842 7.37900 7.50051 7.66539 7.82642 8.11656 8.32375 8.72484 9.19542 9.81178 10.27306 11.31609 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.004872 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.671277 B = 5745.374853 C = 6358.966844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.569 5.569 3 C -0.255 4.255 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.177 3.823 12 H 0.100 0.900 13 C -0.137 4.137 14 C -0.133 4.133 15 C 0.120 3.880 16 N -0.522 5.522 17 C 0.301 3.699 18 C -0.255 4.255 19 C 0.050 3.950 20 N -0.383 5.383 21 C 0.111 3.889 22 N -0.331 5.331 23 C 0.500 3.500 24 O -0.510 6.510 25 H 0.031 0.969 26 H 0.051 0.949 27 H -0.006 1.006 28 H 0.253 0.747 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -17.425 -6.040 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.288 5.288 3 C -0.384 4.384 4 H 0.090 0.910 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.064 3.936 12 H 0.117 0.883 13 C -0.177 4.177 14 C -0.172 4.172 15 C -0.002 4.002 16 N -0.254 5.254 17 C 0.046 3.954 18 C -0.286 4.286 19 C -0.095 4.095 20 N -0.167 5.167 21 C -0.031 4.031 22 N -0.161 5.161 23 C 0.287 3.713 24 O -0.382 6.382 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.190 0.810 36 H 0.190 0.810 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.023 -17.969 -5.956 18.958 hybrid contribution 0.336 1.436 -0.721 1.642 sum 1.359 -16.533 -6.677 17.882 Atomic orbital electron populations 1.20782 0.82012 0.96278 0.98891 1.43724 1.01959 0.99287 1.83865 1.19237 0.96212 0.84321 1.38669 0.90971 1.24868 0.97841 0.98233 0.98394 1.70114 1.19528 1.26824 1.38346 0.86223 0.78619 0.83684 0.77831 1.21424 1.21833 1.20391 1.20188 0.98180 0.86797 0.88471 0.88262 1.22284 1.01991 0.93293 1.00154 1.21899 1.00190 0.97400 0.97699 1.21416 1.01206 0.93580 0.84039 1.45097 1.67745 1.08234 1.04315 1.19506 0.96573 0.91301 0.87970 1.22043 1.13782 1.03289 0.89463 1.22571 1.00626 0.87215 0.99100 1.47990 1.52531 1.12804 1.03406 1.21718 0.99616 0.83916 0.97860 1.77283 1.28238 1.16950 0.93666 1.22635 0.75407 0.79418 0.93856 1.90563 1.48689 1.67043 1.31857 0.95091 0.93068 0.98768 0.93657 0.90319 0.91320 0.89905 0.91072 0.91594 0.90736 0.81008 0.81009 0.91261 0.89804 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.26 7.85 59.85 0.47 4.73 16 2 N -0.57 -14.61 2.57 -175.06 -0.45 -15.06 16 3 C -0.26 -7.12 9.62 -15.06 -0.14 -7.27 16 4 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 5 C 0.01 0.14 4.99 -17.43 -0.09 0.05 16 6 N -0.90 -26.37 10.76 55.49 0.60 -25.77 16 7 Si 0.91 22.21 29.59 -169.99 -5.03 17.18 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.18 3.71 2.80 -69.30 -0.19 3.51 16 12 H 0.10 2.02 7.83 -51.93 -0.41 1.61 16 13 C -0.14 -2.34 5.45 -26.60 -0.14 -2.49 16 14 C -0.13 -1.72 6.02 -26.68 -0.16 -1.88 16 15 C 0.12 1.72 6.07 -4.48 -0.03 1.69 16 16 N -0.52 -9.47 3.05 -116.21 -0.35 -9.82 16 17 C 0.30 5.53 7.35 -154.38 -1.13 4.39 16 18 C -0.26 -4.50 9.40 -39.83 -0.37 -4.88 16 19 C 0.05 0.67 11.48 -17.24 -0.20 0.48 16 20 N -0.38 -5.14 4.01 -68.18 -0.27 -5.42 16 21 C 0.11 0.87 11.47 59.85 0.69 1.55 16 22 N -0.33 -5.53 12.12 31.44 0.38 -5.15 16 23 C 0.50 10.48 6.10 -11.87 -0.07 10.41 16 24 O -0.51 -12.27 13.43 5.54 0.07 -12.19 16 25 H 0.03 0.82 7.58 -51.92 -0.39 0.43 16 26 H 0.05 1.45 7.00 -51.93 -0.36 1.09 16 27 H -0.01 -0.15 7.28 -51.93 -0.38 -0.53 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.25 7.33 -51.93 -0.38 0.87 16 31 H 0.08 0.85 8.14 -51.94 -0.42 0.43 16 32 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 35 H 0.17 3.34 5.92 -52.48 -0.31 3.03 16 36 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -34.49 317.55 -7.23 -41.72 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.58 Total: -0.58 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -1.38 Total: 10.31 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.10 Total: -61.22 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.49 -7.23 -41.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173275881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.817 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds