Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99941 * 2 1 4 4 H 1.08003 * 119.99808 * 198.75665 * 3 2 1 5 5 C 1.38810 * 120.00213 * 18.75375 * 3 2 1 6 6 N 1.31612 * 120.00248 * 17.78885 * 5 3 2 7 7 Si 1.86802 * 119.99953 * 197.79459 * 5 3 2 8 8 H 1.48500 * 109.47399 * 89.99662 * 7 5 3 9 9 H 1.48500 * 109.46967 * 209.99983 * 7 5 3 10 10 H 1.48498 * 109.47075 * 329.99744 * 7 5 3 11 11 C 1.46496 * 119.99891 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.40202 * 179.97438 * 11 2 1 13 13 C 1.53072 * 109.40341 * 299.82795 * 11 2 1 14 14 C 1.53178 * 108.51517 * 169.01848 * 13 11 2 15 15 C 1.52930 * 108.62484 * 292.41558 * 14 13 11 16 16 N 1.45746 * 110.49001 * 50.74851 * 15 14 13 17 17 C 1.40160 * 117.94776 * 160.92328 * 16 15 14 18 18 C 1.40410 * 125.97604 * 192.18949 * 17 16 15 19 19 C 1.35232 * 107.86812 * 179.82850 * 18 17 16 20 20 N 1.34970 * 107.86238 * 0.42732 * 19 18 17 21 21 C 1.46498 * 125.97457 * 179.76206 * 20 19 18 22 22 N 1.31222 * 125.97243 * 12.49591 * 17 16 15 23 23 C 1.33359 * 124.10674 * 340.94990 * 16 15 14 24 24 O 1.21298 * 118.24337 * 182.20285 * 23 16 15 25 25 H 1.09009 * 109.46840 * 272.54649 * 1 2 3 26 26 H 1.08992 * 109.47115 * 32.54474 * 1 2 3 27 27 H 1.09002 * 109.47173 * 152.55006 * 1 2 3 28 28 H 0.97000 * 120.00632 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.67371 * 288.67439 * 13 11 2 30 30 H 1.09001 * 109.67223 * 49.20999 * 13 11 2 31 31 H 1.08989 * 109.63060 * 172.67111 * 14 13 11 32 32 H 1.09001 * 109.75535 * 52.23197 * 14 13 11 33 33 H 1.08991 * 109.29992 * 290.43604 * 15 14 13 34 34 H 1.09000 * 109.12613 * 170.95494 * 15 14 13 35 35 H 1.08008 * 126.06524 * 359.97438 * 18 17 16 36 36 H 1.08006 * 126.06879 * 180.15950 * 19 18 17 37 37 H 1.09001 * 109.47233 * 269.98144 * 21 20 19 38 38 H 1.08993 * 109.47212 * 29.98814 * 21 20 19 39 39 H 1.09000 * 109.46572 * 149.98355 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1867 1.2107 -0.3008 5 6 1.5109 2.3561 0.3865 6 7 0.3901 2.2980 1.0739 7 14 2.2421 4.0136 -0.0693 8 1 1.7040 4.4475 -1.3836 9 1 1.8835 5.0146 0.9674 10 1 3.7200 3.8963 -0.1538 11 6 2.1975 -1.2687 0.0006 12 1 3.2689 -1.0682 0.0000 13 6 1.8298 -2.0676 1.2534 14 6 2.3816 -3.4887 1.1035 15 6 1.6192 -4.1926 -0.0198 16 7 1.6013 -3.3662 -1.2202 17 6 1.3196 -3.9902 -2.4432 18 6 1.4909 -3.4241 -3.7167 19 6 1.1115 -4.3429 -4.6336 20 7 0.7056 -5.4463 -3.9706 21 6 0.2076 -6.6820 -4.5799 22 7 0.8444 -5.2035 -2.5981 23 6 1.8368 -2.0536 -1.2279 24 8 1.7546 -1.4618 -2.2836 25 1 -0.3633 0.0457 1.0267 26 1 -0.3633 0.8662 -0.5528 27 1 -0.3633 -0.9120 -0.4737 28 1 -0.0561 3.1157 1.3443 29 1 2.2702 -1.5958 2.1318 30 1 0.7457 -2.1039 1.3604 31 1 2.2446 -4.0350 2.0366 32 1 3.4423 -3.4478 0.8559 33 1 0.5954 -4.3813 0.3028 34 1 2.1073 -5.1414 -0.2428 35 1 1.8622 -2.4319 -3.9268 36 1 1.1262 -4.2149 -5.7059 37 1 -0.8739 -6.6177 -4.7000 38 1 0.6740 -6.8197 -5.5553 39 1 0.4522 -7.5279 -3.9376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173275881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 71.670218 kcal Electronic energy + Delta-G solvation = -22364.988529 eV Core-core repulsion = 19117.344881 eV Total energy + Delta-G solvation = -3247.643648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.55041 -41.13601 -37.70902 -37.44430 -34.95828 -33.29871 -32.30021 -31.02977 -29.75726 -28.11974 -27.41005 -25.83717 -24.17472 -23.31596 -21.88776 -21.41630 -19.53538 -18.89542 -18.25421 -17.36549 -17.25980 -17.15082 -16.60580 -16.00336 -15.58310 -15.38203 -15.14642 -14.71315 -14.41194 -14.33057 -14.25023 -13.74962 -13.51358 -13.29382 -13.08494 -12.93193 -12.69700 -12.50322 -12.35772 -12.16361 -12.08158 -11.95760 -11.72577 -11.68195 -11.10704 -10.79527 -10.45112 -9.80486 -9.08995 -8.91960 -7.89022 -5.30997 0.77596 1.24382 1.43645 1.46571 1.50409 1.57666 2.10145 2.20818 2.51484 3.26368 3.48791 3.56627 3.82146 3.86516 4.00291 4.06533 4.16079 4.43533 4.49967 4.51221 4.52616 4.63966 4.67996 4.73940 4.86593 4.88649 4.94015 5.07761 5.11842 5.18439 5.26990 5.38569 5.53153 5.62731 5.91579 6.11193 6.20009 6.25549 6.82096 7.03910 7.18010 7.75498 8.18589 9.17144 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.004872 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.671277 B = 5745.374853 C = 6358.966844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.587 5.587 3 C -0.267 4.267 4 H 0.072 0.928 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.968 3.032 8 H -0.293 1.293 9 H -0.289 1.289 10 H -0.265 1.265 11 C 0.170 3.830 12 H 0.101 0.899 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.115 3.885 16 N -0.520 5.520 17 C 0.272 3.728 18 C -0.303 4.303 19 C 0.078 3.922 20 N -0.373 5.373 21 C 0.098 3.902 22 N -0.343 5.343 23 C 0.501 3.499 24 O -0.552 6.552 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.002 0.998 28 H 0.251 0.749 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.220 0.780 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -20.013 -6.792 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.308 5.308 3 C -0.396 4.396 4 H 0.090 0.910 5 C -0.241 4.241 6 N -0.578 5.578 7 Si 0.796 3.204 8 H -0.220 1.220 9 H -0.216 1.216 10 H -0.190 1.190 11 C 0.059 3.941 12 H 0.119 0.881 13 C -0.166 4.166 14 C -0.157 4.157 15 C -0.006 4.006 16 N -0.250 5.250 17 C 0.019 3.981 18 C -0.333 4.333 19 C -0.069 4.069 20 N -0.157 5.157 21 C -0.041 4.041 22 N -0.174 5.174 23 C 0.288 3.712 24 O -0.427 6.427 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.162 0.838 36 H 0.236 0.764 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.624 -20.661 -6.686 21.776 hybrid contribution 0.126 2.030 -0.632 2.130 sum 1.750 -18.631 -7.319 20.093 Atomic orbital electron populations 1.20376 0.82766 0.94935 0.97446 1.43833 1.01792 1.00587 1.84596 1.19532 0.96421 0.85627 1.38046 0.90972 1.25613 0.98533 1.01312 0.98656 1.70236 1.20822 1.27273 1.39513 0.85254 0.78545 0.79654 0.76926 1.22038 1.21557 1.18994 1.20468 0.97817 0.85671 0.90173 0.88147 1.22102 1.01320 0.95476 0.97691 1.21883 1.00275 0.94497 0.99013 1.21699 1.02018 0.93893 0.83018 1.44941 1.66608 1.07613 1.05816 1.19672 0.98232 0.92180 0.88008 1.21962 1.17054 1.03591 0.90740 1.23087 0.97415 0.85836 1.00534 1.48518 1.50631 1.14164 1.02381 1.22235 1.00812 0.81680 0.99393 1.77192 1.28192 1.15999 0.96034 1.22305 0.75457 0.80497 0.92977 1.90560 1.50770 1.68327 1.33017 0.96345 0.96465 0.97981 0.94028 0.90277 0.92644 0.85978 0.89854 0.91187 0.88820 0.83834 0.76359 0.89813 0.86052 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.25 7.85 127.77 1.00 11.25 16 2 N -0.59 -31.13 2.57 -707.78 -1.82 -32.95 16 3 C -0.27 -15.26 9.62 84.03 0.81 -14.46 16 4 H 0.07 4.02 7.81 -2.91 -0.02 4.00 16 5 C -0.05 -2.63 4.99 84.86 0.42 -2.21 16 6 N -0.93 -56.02 10.76 21.65 0.23 -55.78 16 7 Si 0.97 46.52 29.59 68.60 2.03 48.55 16 8 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.17 7.26 2.80 44.11 0.12 7.38 16 12 H 0.10 4.17 7.83 -2.38 -0.02 4.15 16 13 C -0.13 -4.22 5.45 30.68 0.17 -4.05 16 14 C -0.12 -2.76 6.02 30.63 0.18 -2.58 16 15 C 0.11 3.07 6.07 86.50 0.52 3.59 16 16 N -0.52 -18.79 3.05 -640.75 -1.95 -20.75 16 17 C 0.27 9.92 7.35 133.32 0.98 10.90 16 18 C -0.30 -10.74 9.40 22.11 0.21 -10.54 16 19 C 0.08 1.93 11.48 83.52 0.96 2.89 16 20 N -0.37 -8.92 4.01 -369.62 -1.48 -10.40 16 21 C 0.10 1.12 11.47 127.77 1.47 2.59 16 22 N -0.34 -10.88 12.12 -54.45 -0.66 -11.54 16 23 C 0.50 21.52 6.10 87.71 0.53 22.05 16 24 O -0.55 -27.82 13.43 -3.09 -0.04 -27.87 16 25 H 0.02 1.02 7.58 -2.38 -0.02 1.00 16 26 H 0.02 1.00 7.00 -2.39 -0.02 0.98 16 27 H 0.00 0.09 7.28 -2.39 -0.02 0.07 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.05 2.00 7.33 -2.39 -0.02 1.98 16 31 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.79 8.13 -2.39 -0.02 1.78 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.19 8.02 -2.39 -0.02 2.17 16 35 H 0.14 5.91 5.92 -2.91 -0.02 5.90 16 36 H 0.22 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.95 317.55 4.73 -74.22 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.04 Total: 9.69 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 7.38 Total: 26.82 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -5.68 Total: -131.42 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.04 Total: -27.87 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.95 4.73 -74.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173275881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.895 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds