Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00655 * 2 1 4 4 H 1.07998 * 120.00371 * 225.37283 * 3 2 1 5 5 C 1.38814 * 119.99811 * 45.36538 * 3 2 1 6 6 N 1.31617 * 120.00103 * 179.07565 * 5 3 2 7 7 Si 1.86803 * 119.99796 * 359.08062 * 5 3 2 8 8 H 1.48497 * 109.46750 * 274.31334 * 7 5 3 9 9 H 1.48494 * 109.47285 * 34.31797 * 7 5 3 10 10 H 1.48507 * 109.46824 * 154.31849 * 7 5 3 11 11 C 1.46507 * 119.99491 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.40089 * 6.99600 * 11 2 1 13 13 C 1.53070 * 109.39654 * 247.17254 * 11 2 1 14 14 C 1.53340 * 108.42658 * 288.77216 * 13 11 2 15 15 C 1.52924 * 108.67629 * 292.47167 * 14 13 11 16 16 N 1.45754 * 110.48712 * 50.75095 * 15 14 13 17 17 C 1.40153 * 117.94891 * 160.93210 * 16 15 14 18 18 C 1.40413 * 125.97018 * 4.71083 * 17 16 15 19 19 C 1.35235 * 107.86841 * 179.86991 * 18 17 16 20 20 N 1.34977 * 107.85668 * 0.39347 * 19 18 17 21 21 C 1.46506 * 125.97231 * 179.74873 * 20 19 18 22 22 N 1.31221 * 125.97582 * 185.02542 * 17 16 15 23 23 C 1.33180 * 124.05491 * 340.95329 * 16 15 14 24 24 O 1.21298 * 118.11448 * 182.18469 * 23 16 15 25 25 H 1.09006 * 109.47304 * 96.05656 * 1 2 3 26 26 H 1.08993 * 109.47573 * 216.06294 * 1 2 3 27 27 H 1.09010 * 109.47011 * 336.06540 * 1 2 3 28 28 H 0.96994 * 120.00201 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.67413 * 48.50312 * 13 11 2 30 30 H 1.08996 * 109.67447 * 168.99906 * 13 11 2 31 31 H 1.09001 * 109.60369 * 52.22395 * 14 13 11 32 32 H 1.08999 * 109.60728 * 172.55250 * 14 13 11 33 33 H 1.08992 * 109.30336 * 171.06521 * 15 14 13 34 34 H 1.09004 * 109.29428 * 290.64799 * 15 14 13 35 35 H 1.07999 * 126.06875 * 0.02562 * 18 17 16 36 36 H 1.08003 * 126.07407 * 180.14409 * 19 18 17 37 37 H 1.08995 * 109.47459 * 269.97468 * 21 20 19 38 38 H 1.09007 * 109.47010 * 29.98084 * 21 20 19 39 39 H 1.08999 * 109.46718 * 149.97246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 2.9888 1.3249 -0.6656 5 6 1.7654 2.2092 0.8555 6 7 2.4348 3.3424 0.8685 7 14 0.2982 1.9780 1.9883 8 1 -0.9483 2.3293 1.2617 9 1 0.2317 0.5617 2.4295 10 1 0.4449 2.8596 3.1744 11 6 2.1974 -1.2689 -0.0006 12 1 1.4946 -2.0925 -0.1262 13 6 2.9366 -1.4297 1.3301 14 6 4.1017 -0.4332 1.3608 15 6 5.1322 -0.8521 0.3115 16 7 4.4883 -1.0674 -0.9783 17 6 5.2939 -1.0536 -2.1251 18 6 6.6934 -0.9422 -2.1486 19 6 7.0903 -0.9707 -3.4411 20 7 5.9872 -1.0865 -4.2103 21 6 5.9613 -1.1487 -5.6738 22 7 4.8717 -1.1368 -3.3647 23 6 3.1822 -1.2759 -1.1342 24 8 2.7662 -1.4830 -2.2547 25 1 -0.3634 -0.1084 -1.0220 26 1 -0.3634 -0.8307 0.6049 27 1 -0.3633 0.9394 0.4170 28 1 2.1665 4.0573 1.4665 29 1 2.2554 -1.2233 2.1556 30 1 3.3202 -2.4463 1.4163 31 1 3.7335 0.5671 1.1328 32 1 4.5606 -0.4374 2.3495 33 1 5.8842 -0.0694 0.2125 34 1 5.6142 -1.7767 0.6290 35 1 7.3387 -0.8524 -1.2872 36 1 8.1086 -0.9076 -3.7952 37 1 5.8763 -0.1404 -6.0789 38 1 6.8814 -1.6088 -6.0343 39 1 5.1069 -1.7434 -5.9971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173275892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = 104.369853 kcal Electronic energy + Delta-G solvation = -22901.067435 eV Core-core repulsion = 19654.841750 eV Total energy + Delta-G solvation = -3246.225685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09069 -39.60100 -36.22388 -35.55437 -33.16562 -31.83552 -31.07529 -29.76244 -28.47114 -26.21713 -26.02071 -24.53929 -22.56693 -21.84613 -20.32856 -20.02754 -17.81757 -17.16322 -16.86822 -15.78344 -15.62600 -15.49786 -15.06496 -14.79779 -14.07681 -13.79130 -13.59087 -13.23645 -12.82147 -12.76306 -12.61325 -12.41955 -12.35413 -12.32752 -12.06936 -11.76546 -11.13786 -10.70800 -10.53596 -10.44581 -10.28800 -10.16406 -9.81373 -9.69894 -9.51872 -8.95020 -8.50754 -8.43510 -7.65031 -6.81134 -6.01740 -3.61128 2.21474 2.62818 2.90986 3.26626 3.38777 3.44104 3.55734 3.80299 4.42801 4.74767 4.94395 5.03561 5.18177 5.24949 5.35088 5.37628 5.48533 5.55448 5.64538 5.74844 5.86858 5.91996 5.93464 6.05439 6.18515 6.25107 6.35481 6.41414 6.52577 6.59282 6.69556 6.75753 7.27057 7.31330 7.44363 7.76064 8.02932 8.32894 8.37054 8.81805 8.93887 9.57410 9.99319 11.09200 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.005880 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.034922 B = 4760.903920 C = 4807.405143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.595 5.595 3 C -0.269 4.269 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.903 5.903 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.268 1.268 10 H -0.306 1.306 11 C 0.175 3.825 12 H 0.086 0.914 13 C -0.129 4.129 14 C -0.159 4.159 15 C 0.127 3.873 16 N -0.512 5.512 17 C 0.297 3.703 18 C -0.288 4.288 19 C 0.060 3.940 20 N -0.386 5.386 21 C 0.109 3.891 22 N -0.268 5.268 23 C 0.514 3.486 24 O -0.514 6.514 25 H 0.020 0.980 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.148 0.852 36 H 0.171 0.829 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -9.837 -3.117 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.321 5.321 3 C -0.397 4.397 4 H 0.097 0.903 5 C -0.164 4.164 6 N -0.543 5.543 7 Si 0.742 3.258 8 H -0.215 1.215 9 H -0.193 1.193 10 H -0.235 1.235 11 C 0.064 3.936 12 H 0.104 0.896 13 C -0.168 4.168 14 C -0.195 4.195 15 C 0.004 3.996 16 N -0.242 5.242 17 C 0.040 3.960 18 C -0.320 4.320 19 C -0.087 4.087 20 N -0.170 5.170 21 C -0.033 4.033 22 N -0.097 5.097 23 C 0.301 3.699 24 O -0.385 6.385 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.188 0.812 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.688 -9.895 -4.495 13.312 hybrid contribution 0.089 0.293 1.082 1.125 sum 7.777 -9.602 -3.413 12.819 Atomic orbital electron populations 1.21500 0.84584 0.98935 0.98470 1.43848 1.00346 1.01069 1.86789 1.18615 1.14282 0.89596 1.17220 0.90333 1.25551 0.98035 0.96362 0.96414 1.69761 1.40065 1.05055 1.39417 0.86545 0.82202 0.77636 0.79431 1.21502 1.19337 1.23497 1.20283 0.91914 0.90817 0.90538 0.89559 1.22114 0.98226 0.97666 0.98825 1.22379 0.94878 1.05687 0.96606 1.21456 0.96322 1.00315 0.81491 1.44858 1.06521 1.68477 1.04330 1.19609 0.89918 0.98771 0.87655 1.21091 0.93029 1.20562 0.97290 1.22321 0.93268 1.02045 0.91037 1.48533 1.04181 1.57780 1.06498 1.21719 1.03801 1.03102 0.74661 1.78252 1.04721 1.27762 0.98944 1.21438 0.81589 0.74745 0.92172 1.90702 1.76115 1.46175 1.25466 0.96189 0.94824 0.93564 0.92453 0.90989 0.92986 0.84584 0.91365 0.90682 0.92461 0.83475 0.81174 0.91135 0.89978 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 8.83 59.85 0.53 2.95 16 2 N -0.60 -14.39 2.45 -175.06 -0.43 -14.82 16 3 C -0.27 -7.34 6.30 -15.06 -0.09 -7.43 16 4 H 0.08 2.45 7.54 -52.49 -0.40 2.05 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 6 N -0.90 -26.58 13.97 55.49 0.78 -25.80 16 7 Si 0.91 21.92 24.56 -169.99 -4.18 17.75 16 8 H -0.29 -6.86 6.73 56.52 0.38 -6.48 16 9 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16 10 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 11 C 0.18 3.70 3.07 -69.30 -0.21 3.49 16 12 H 0.09 1.68 7.92 -51.93 -0.41 1.26 16 13 C -0.13 -2.30 5.63 -26.52 -0.15 -2.45 16 14 C -0.16 -2.88 5.85 -26.59 -0.16 -3.04 16 15 C 0.13 2.13 5.80 -4.48 -0.03 2.10 16 16 N -0.51 -10.54 3.05 -116.26 -0.35 -10.90 16 17 C 0.30 6.04 7.38 -154.39 -1.14 4.90 16 18 C -0.29 -4.56 9.82 -39.83 -0.39 -4.95 16 19 C 0.06 0.81 11.48 -17.24 -0.20 0.61 16 20 N -0.39 -6.16 4.01 -68.17 -0.27 -6.43 16 21 C 0.11 1.16 11.47 59.85 0.69 1.85 16 22 N -0.27 -5.77 10.45 31.44 0.33 -5.44 16 23 C 0.51 11.81 5.93 -11.95 -0.07 11.74 16 24 O -0.51 -13.50 15.24 5.54 0.08 -13.42 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.05 1.08 2.76 -51.92 -0.14 0.94 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.14 3.14 4.55 -51.93 -0.24 2.90 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.20 7.39 -51.93 -0.38 0.81 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.15 1.91 7.56 -52.49 -0.40 1.51 16 36 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -35.95 308.45 -6.08 -42.03 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.37 Total: 1.66 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -1.32 Total: 10.73 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.05 Total: -63.40 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.18 Total: 17.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.95 -6.08 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173275892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.400 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds