Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00655 * 2 1 4 4 H 1.07998 * 120.00371 * 225.37283 * 3 2 1 5 5 C 1.38814 * 119.99811 * 45.36538 * 3 2 1 6 6 N 1.31617 * 120.00103 * 179.07565 * 5 3 2 7 7 Si 1.86803 * 119.99796 * 359.08062 * 5 3 2 8 8 H 1.48497 * 109.46750 * 274.31334 * 7 5 3 9 9 H 1.48494 * 109.47285 * 34.31797 * 7 5 3 10 10 H 1.48507 * 109.46824 * 154.31849 * 7 5 3 11 11 C 1.46507 * 119.99491 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.40089 * 6.99600 * 11 2 1 13 13 C 1.53070 * 109.39654 * 247.17254 * 11 2 1 14 14 C 1.53340 * 108.42658 * 288.77216 * 13 11 2 15 15 C 1.52924 * 108.67629 * 292.47167 * 14 13 11 16 16 N 1.45754 * 110.48712 * 50.75095 * 15 14 13 17 17 C 1.40153 * 117.94891 * 160.93210 * 16 15 14 18 18 C 1.40413 * 125.97018 * 4.71083 * 17 16 15 19 19 C 1.35235 * 107.86841 * 179.86991 * 18 17 16 20 20 N 1.34977 * 107.85668 * 0.39347 * 19 18 17 21 21 C 1.46506 * 125.97231 * 179.74873 * 20 19 18 22 22 N 1.31221 * 125.97582 * 185.02542 * 17 16 15 23 23 C 1.33180 * 124.05491 * 340.95329 * 16 15 14 24 24 O 1.21298 * 118.11448 * 182.18469 * 23 16 15 25 25 H 1.09006 * 109.47304 * 96.05656 * 1 2 3 26 26 H 1.08993 * 109.47573 * 216.06294 * 1 2 3 27 27 H 1.09010 * 109.47011 * 336.06540 * 1 2 3 28 28 H 0.96994 * 120.00201 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.67413 * 48.50312 * 13 11 2 30 30 H 1.08996 * 109.67447 * 168.99906 * 13 11 2 31 31 H 1.09001 * 109.60369 * 52.22395 * 14 13 11 32 32 H 1.08999 * 109.60728 * 172.55250 * 14 13 11 33 33 H 1.08992 * 109.30336 * 171.06521 * 15 14 13 34 34 H 1.09004 * 109.29428 * 290.64799 * 15 14 13 35 35 H 1.07999 * 126.06875 * 0.02562 * 18 17 16 36 36 H 1.08003 * 126.07407 * 180.14409 * 19 18 17 37 37 H 1.08995 * 109.47459 * 269.97468 * 21 20 19 38 38 H 1.09007 * 109.47010 * 29.98084 * 21 20 19 39 39 H 1.08999 * 109.46718 * 149.97246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 2.9888 1.3249 -0.6656 5 6 1.7654 2.2092 0.8555 6 7 2.4348 3.3424 0.8685 7 14 0.2982 1.9780 1.9883 8 1 -0.9483 2.3293 1.2617 9 1 0.2317 0.5617 2.4295 10 1 0.4449 2.8596 3.1744 11 6 2.1974 -1.2689 -0.0006 12 1 1.4946 -2.0925 -0.1262 13 6 2.9366 -1.4297 1.3301 14 6 4.1017 -0.4332 1.3608 15 6 5.1322 -0.8521 0.3115 16 7 4.4883 -1.0674 -0.9783 17 6 5.2939 -1.0536 -2.1251 18 6 6.6934 -0.9422 -2.1486 19 6 7.0903 -0.9707 -3.4411 20 7 5.9872 -1.0865 -4.2103 21 6 5.9613 -1.1487 -5.6738 22 7 4.8717 -1.1368 -3.3647 23 6 3.1822 -1.2759 -1.1342 24 8 2.7662 -1.4830 -2.2547 25 1 -0.3634 -0.1084 -1.0220 26 1 -0.3634 -0.8307 0.6049 27 1 -0.3633 0.9394 0.4170 28 1 2.1665 4.0573 1.4665 29 1 2.2554 -1.2233 2.1556 30 1 3.3202 -2.4463 1.4163 31 1 3.7335 0.5671 1.1328 32 1 4.5606 -0.4374 2.3495 33 1 5.8842 -0.0694 0.2125 34 1 5.6142 -1.7767 0.6290 35 1 7.3387 -0.8524 -1.2872 36 1 8.1086 -0.9076 -3.7952 37 1 5.8763 -0.1404 -6.0789 38 1 6.8814 -1.6088 -6.0343 39 1 5.1069 -1.7434 -5.9971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173275892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 78.327500 kcal Electronic energy + Delta-G solvation = -22902.196717 eV Core-core repulsion = 19654.841750 eV Total energy + Delta-G solvation = -3247.354966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44952 -41.10652 -37.99153 -37.16908 -34.66045 -33.67112 -32.51002 -31.06054 -30.06166 -27.98446 -27.32380 -26.10486 -24.06600 -23.55578 -21.57318 -21.47605 -19.41918 -18.88127 -18.37353 -17.41326 -17.22676 -16.99549 -16.62637 -16.22917 -15.56184 -15.36599 -14.94752 -14.69557 -14.42771 -14.40225 -14.14116 -14.04865 -13.74214 -13.55889 -13.39481 -13.19371 -12.95706 -12.44244 -12.17215 -12.05355 -11.93630 -11.57965 -11.53234 -11.35280 -11.08867 -10.66564 -10.45332 -9.73597 -9.02800 -8.75200 -8.13279 -5.73062 0.98397 1.35502 1.37127 1.43440 1.49793 1.56700 2.19372 2.37117 2.42842 3.11982 3.31456 3.62269 3.86438 3.98871 4.06350 4.12891 4.21279 4.43285 4.44767 4.51846 4.57629 4.65227 4.66327 4.70671 4.75644 4.79914 4.89969 4.92923 4.99751 5.17797 5.26520 5.34576 5.83864 5.90010 5.96433 6.16263 6.26613 6.32429 6.86771 6.96502 7.29268 7.49988 7.94724 9.00697 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.005880 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.034922 B = 4760.903920 C = 4807.405143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.608 5.608 3 C -0.245 4.245 4 H 0.024 0.976 5 C -0.013 4.013 6 N -0.951 5.951 7 Si 0.971 3.029 8 H -0.285 1.285 9 H -0.240 1.240 10 H -0.312 1.312 11 C 0.167 3.833 12 H 0.103 0.897 13 C -0.119 4.119 14 C -0.157 4.157 15 C 0.124 3.876 16 N -0.515 5.515 17 C 0.260 3.740 18 C -0.304 4.304 19 C 0.083 3.917 20 N -0.389 5.389 21 C 0.099 3.901 22 N -0.338 5.338 23 C 0.503 3.497 24 O -0.564 6.564 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.173 0.827 36 H 0.230 0.770 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -11.802 -2.138 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.334 5.334 3 C -0.374 4.374 4 H 0.042 0.958 5 C -0.210 4.210 6 N -0.594 5.594 7 Si 0.801 3.199 8 H -0.213 1.213 9 H -0.164 1.164 10 H -0.241 1.241 11 C 0.058 3.942 12 H 0.121 0.879 13 C -0.158 4.158 14 C -0.194 4.194 15 C 0.003 3.997 16 N -0.244 5.244 17 C 0.006 3.994 18 C -0.335 4.335 19 C -0.064 4.064 20 N -0.173 5.173 21 C -0.041 4.041 22 N -0.168 5.168 23 C 0.290 3.710 24 O -0.438 6.438 25 H 0.034 0.966 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.191 0.809 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.124 -11.895 -3.510 15.397 hybrid contribution -0.195 0.888 0.556 1.066 sum 8.930 -11.007 -2.954 14.479 Atomic orbital electron populations 1.21621 0.83426 0.99896 0.99032 1.43982 1.01256 1.01119 1.87064 1.18126 1.12632 0.91169 1.15502 0.95821 1.26179 1.00990 0.95786 0.98049 1.69909 1.42373 1.06168 1.40918 0.85538 0.78513 0.78843 0.77020 1.21291 1.16381 1.24091 1.20577 0.92178 0.89702 0.91761 0.87897 1.22047 0.97725 0.99606 0.96429 1.22236 0.95702 1.02853 0.98636 1.21688 0.95855 1.02406 0.79702 1.44943 1.06228 1.67343 1.05884 1.20100 0.91824 1.00110 0.87379 1.21495 0.91180 1.21343 0.99501 1.23212 0.94788 0.98465 0.89921 1.48903 1.03672 1.56823 1.07932 1.22124 1.05914 1.03955 0.72107 1.78073 1.08496 1.29782 1.00496 1.21800 0.82793 0.74377 0.91986 1.90660 1.77229 1.48687 1.27244 0.96625 0.90961 0.94557 0.92632 0.90647 0.89158 0.89724 0.88089 0.90384 0.88350 0.80921 0.75347 0.90396 0.85052 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.47 8.83 127.77 1.13 5.60 16 2 N -0.61 -29.47 2.45 -707.77 -1.73 -31.20 16 3 C -0.24 -13.85 6.30 84.03 0.53 -13.32 16 4 H 0.02 1.60 7.54 -2.91 -0.02 1.58 16 5 C -0.01 -0.75 5.29 84.86 0.45 -0.30 16 6 N -0.95 -58.24 13.97 21.65 0.30 -57.94 16 7 Si 0.97 45.16 24.56 68.60 1.68 46.84 16 8 H -0.28 -13.04 6.73 99.48 0.67 -12.37 16 9 H -0.24 -10.00 6.71 99.48 0.67 -9.33 16 10 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 11 C 0.17 6.97 3.07 44.10 0.14 7.11 16 12 H 0.10 3.86 7.92 -2.39 -0.02 3.84 16 13 C -0.12 -3.96 5.63 30.73 0.17 -3.79 16 14 C -0.16 -5.50 5.85 30.68 0.18 -5.32 16 15 C 0.12 4.02 5.80 86.49 0.50 4.52 16 16 N -0.52 -21.49 3.05 -640.99 -1.95 -23.44 16 17 C 0.26 10.76 7.38 133.33 0.98 11.74 16 18 C -0.30 -9.13 9.82 22.11 0.22 -8.91 16 19 C 0.08 1.99 11.48 83.52 0.96 2.95 16 20 N -0.39 -12.01 4.01 -369.59 -1.48 -13.49 16 21 C 0.10 1.94 11.47 127.77 1.47 3.41 16 22 N -0.34 -15.03 10.45 -54.45 -0.57 -15.60 16 23 C 0.50 23.71 5.93 87.74 0.52 24.23 16 24 O -0.56 -31.04 15.24 -3.09 -0.05 -31.09 16 25 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 27 H 0.04 1.64 2.76 -2.38 -0.01 1.64 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.35 8.13 -2.39 -0.02 2.33 16 31 H 0.08 3.98 4.55 -2.39 -0.01 3.97 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.08 2.44 7.39 -2.39 -0.02 2.43 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.17 4.02 7.56 -2.91 -0.02 4.00 16 36 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -86.08 308.45 4.42 -81.66 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.98 Total: 16.34 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 7.24 Total: 27.93 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -5.44 Total: -141.68 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.09 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.68 Total: 46.84 kcal Total: -86.08 4.42 -81.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173275892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.990 kcal (2) G-P(sol) polarization free energy of solvation -86.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds