Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99932 * 2 1 4 4 C 1.50694 * 109.47066 * 293.95260 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.46907 * 111.00071 * 123.95245 * 2 1 3 13 13 H 1.08993 * 110.43201 * 295.34945 * 12 2 1 14 14 C 1.54630 * 110.48521 * 57.88810 * 12 2 1 15 15 C 1.54688 * 101.66729 * 143.39416 * 14 12 2 16 16 N 1.46759 * 105.53761 * 334.74157 * 15 14 12 17 17 C 1.40759 * 124.35332 * 196.90519 * 16 15 14 18 18 C 1.40255 * 126.07499 * 0.06780 * 17 16 15 19 19 N 1.30837 * 108.33349 * 179.97438 * 18 17 16 20 20 N 1.40065 * 108.36713 * 0.02562 * 19 18 17 21 21 C 1.46505 * 126.05228 * 179.97438 * 20 19 18 22 22 C 1.35756 * 126.08552 * 179.76479 * 17 16 15 23 23 C 1.34420 * 111.29752 * 16.92107 * 16 15 14 24 24 O 1.21310 * 124.93941 * 179.55700 * 23 16 15 25 25 H 1.09004 * 109.46699 * 60.00180 * 1 2 3 26 26 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 300.00034 * 1 2 3 28 28 H 1.09007 * 109.47052 * 173.94945 * 3 2 1 29 29 H 1.09003 * 109.46808 * 53.95638 * 3 2 1 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09001 * 110.96999 * 261.60046 * 14 12 2 32 32 H 1.09002 * 110.96869 * 25.35541 * 14 12 2 33 33 H 1.08996 * 110.29277 * 215.67739 * 15 14 12 34 34 H 1.08999 * 110.21081 * 93.76109 * 15 14 12 35 35 H 1.08004 * 125.83683 * 359.94718 * 18 17 16 36 36 H 1.09003 * 109.46623 * 90.02302 * 21 20 19 37 37 H 1.09002 * 109.47366 * 210.02346 * 21 20 19 38 38 H 1.08998 * 109.46921 * 330.02263 * 21 20 19 39 39 H 1.07996 * 126.21308 * 0.02720 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7128 4.0016 -0.6153 8 14 1.5839 4.1864 -3.1387 9 1 2.1159 5.5729 -3.1386 10 1 2.1757 3.4287 -4.2703 11 1 0.1067 4.2236 -3.2865 12 6 1.9954 -0.7660 1.1376 13 1 1.7236 -0.2863 2.0778 14 6 1.4705 -2.2200 1.1004 15 6 2.6981 -3.0090 1.6135 16 7 3.8626 -2.1740 1.2965 17 6 5.1910 -2.6390 1.2742 18 6 5.6120 -3.9494 1.5441 19 7 6.9140 -3.9963 1.4242 20 7 7.3713 -2.7194 1.0746 21 6 8.7665 -2.3365 0.8438 22 6 6.2920 -1.9004 0.9821 23 6 3.4977 -0.9079 1.0306 24 8 4.2620 -0.0096 0.7468 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.0797 1.3444 0.1083 29 1 1.5610 1.9273 0.8310 30 1 2.9880 4.9175 -0.7776 31 1 0.6176 -2.3440 1.7677 32 1 1.2142 -2.5162 0.0832 33 1 2.7716 -3.9686 1.1018 34 1 2.6249 -3.1610 2.6903 35 1 4.9710 -4.7781 1.8064 36 1 9.0126 -2.4779 -0.2086 37 1 8.9049 -1.2890 1.1117 38 1 9.4198 -2.9576 1.4564 39 1 6.3069 -0.8514 0.7256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177185817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = 73.012210 kcal Electronic energy + Delta-G solvation = -21903.838752 eV Core-core repulsion = 18656.253298 eV Total energy + Delta-G solvation = -3247.585455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34644 -39.94409 -36.25424 -36.00185 -33.27893 -32.46316 -31.27938 -28.78832 -27.40413 -27.10114 -26.32280 -24.39481 -22.15938 -21.78443 -20.75147 -20.07634 -18.85773 -17.42415 -16.56174 -16.20987 -15.80605 -15.45457 -14.96942 -14.48828 -14.39777 -14.04586 -13.72926 -13.51091 -13.25597 -12.98879 -12.82133 -12.59243 -12.31319 -12.21451 -11.85650 -11.77860 -11.18279 -11.01207 -10.92439 -10.83335 -10.56609 -10.44483 -10.04366 -9.91387 -9.40316 -9.31436 -8.79502 -8.25127 -7.47710 -7.29666 -5.89910 -3.90071 1.85232 2.37355 2.52630 3.16777 3.37250 3.39351 3.43099 3.46183 4.41563 4.48759 4.64384 4.67048 4.84318 4.99595 5.07668 5.10875 5.24502 5.31325 5.38468 5.45647 5.49860 5.64462 5.67999 5.78060 5.90544 6.05566 6.18059 6.21191 6.31287 6.71605 6.86322 7.10488 7.26701 7.41008 7.47309 7.66597 7.87475 8.23366 8.26592 8.58295 8.65604 9.16494 9.71219 11.21065 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.004907 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.569029 B = 5704.493116 C = 6858.626826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.523 5.523 3 C 0.169 3.831 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.054 3.946 13 H 0.070 0.930 14 C -0.125 4.125 15 C 0.109 3.891 16 N -0.543 5.543 17 C 0.017 3.983 18 C 0.033 3.967 19 N -0.288 5.288 20 N -0.376 5.376 21 C 0.108 3.892 22 C 0.036 3.964 23 C 0.526 3.474 24 O -0.489 6.489 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.014 0.986 28 H 0.075 0.925 29 H -0.014 1.014 30 H 0.260 0.740 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -16.148 6.419 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.248 5.248 3 C 0.044 3.956 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.058 4.058 13 H 0.088 0.912 14 C -0.164 4.164 15 C -0.015 4.015 16 N -0.272 5.272 17 C -0.085 4.085 18 C -0.155 4.155 19 N -0.110 5.110 20 N -0.162 5.162 21 C -0.033 4.033 22 C -0.110 4.110 23 C 0.314 3.686 24 O -0.361 6.361 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.004 0.996 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.201 0.799 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.621 -16.357 5.913 18.279 hybrid contribution -1.267 1.475 -0.155 1.951 sum 4.354 -14.882 5.759 16.540 Atomic orbital electron populations 1.22267 0.88240 0.99370 1.01274 1.62284 1.07056 1.18967 1.36538 1.20270 0.98927 0.80140 0.96240 1.21078 1.34694 0.96882 1.01688 0.92217 1.24955 0.95454 0.97380 0.96771 1.69976 1.38274 1.11309 1.33970 0.86608 0.78532 0.78375 0.84119 1.21422 1.20286 1.20392 1.22145 0.91813 0.95479 0.96383 0.91234 1.22786 0.96505 0.93573 1.03497 1.22124 0.84118 0.94688 1.00521 1.45202 1.03350 1.10852 1.67784 1.17563 0.84312 0.93456 1.13183 1.23558 0.92418 0.96112 1.03372 1.77196 1.11446 1.00600 1.21780 1.48280 1.06727 1.06402 1.54775 1.21828 0.77028 1.01791 1.02674 1.22583 0.85506 0.98532 1.04400 1.20853 0.91289 0.80965 0.75528 1.90667 1.58237 1.41963 1.45209 0.90415 0.93349 0.96766 0.90759 0.99603 0.93064 0.89421 0.88714 0.90165 0.90918 0.79914 0.90775 0.89262 0.89433 0.79202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.13 60.06 0.55 1.23 16 2 N -0.52 -11.36 4.60 -236.34 -1.09 -12.45 16 3 C 0.17 4.61 4.58 -4.98 -0.02 4.58 16 4 C -0.50 -14.73 8.51 -34.44 -0.29 -15.02 16 5 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 6 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 7 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.05 0.97 2.65 -67.72 -0.18 0.79 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.13 -1.52 5.47 -24.99 -0.14 -1.65 16 15 C 0.11 1.18 6.93 -3.01 -0.02 1.16 16 16 N -0.54 -8.42 3.16 -112.36 -0.36 -8.78 16 17 C 0.02 0.27 6.80 -83.88 -0.57 -0.30 16 18 C 0.03 0.43 11.53 -17.22 -0.20 0.23 16 19 N -0.29 -4.05 12.56 30.71 0.39 -3.66 16 20 N -0.38 -5.10 4.04 -67.82 -0.27 -5.37 16 21 C 0.11 0.96 11.48 59.85 0.69 1.65 16 22 C 0.04 0.57 10.69 -16.68 -0.18 0.40 16 23 C 0.53 10.27 7.54 -10.86 -0.08 10.19 16 24 O -0.49 -11.60 12.74 5.53 0.07 -11.53 16 25 H 0.08 1.57 6.86 -51.93 -0.36 1.21 16 26 H 0.05 0.71 6.73 -51.93 -0.35 0.36 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 2.24 5.00 -51.92 -0.26 1.98 16 29 H -0.01 -0.40 8.12 -51.93 -0.42 -0.83 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.19 7.75 -51.93 -0.40 0.78 16 33 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.19 3.23 6.51 -52.49 -0.34 2.89 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -36.32 321.58 -6.68 -43.01 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.44 Total: -1.09 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.54 Total: 4.78 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.59 Total: -57.31 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.32 -6.68 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177185817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.019 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds