Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99833 * 2 1 4 4 C 1.50695 * 109.47119 * 66.04239 * 3 2 1 5 5 H 1.07995 * 120.00496 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99572 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99951 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 59.99744 * 8 6 4 10 10 H 1.48503 * 109.47261 * 299.99924 * 8 6 4 11 11 H 1.48500 * 109.47454 * 179.97438 * 8 6 4 12 12 C 1.46895 * 111.00352 * 236.04541 * 2 1 3 13 13 H 1.09001 * 110.44054 * 66.49377 * 12 2 1 14 14 C 1.54631 * 110.48482 * 303.95198 * 12 2 1 15 15 C 1.54475 * 101.76607 * 216.52412 * 14 12 2 16 16 N 1.46762 * 105.47464 * 25.41458 * 15 14 12 17 17 C 1.40767 * 124.35114 * 162.97956 * 16 15 14 18 18 C 1.40248 * 126.08128 * 359.70123 * 17 16 15 19 19 N 1.30827 * 108.33708 * 179.81300 * 18 17 16 20 20 N 1.40070 * 108.36817 * 0.43944 * 19 18 17 21 21 C 1.46499 * 126.05296 * 179.74338 * 20 19 18 22 22 C 1.35753 * 126.07827 * 179.97438 * 17 16 15 23 23 C 1.34422 * 111.29956 * 342.98528 * 16 15 14 24 24 O 1.21309 * 124.93959 * 180.44456 * 23 16 15 25 25 H 1.08997 * 109.47053 * 60.00609 * 1 2 3 26 26 H 1.08996 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47062 * 300.00238 * 1 2 3 28 28 H 1.09002 * 109.46929 * 306.04189 * 3 2 1 29 29 H 1.08998 * 109.47035 * 186.05001 * 3 2 1 30 30 H 0.97006 * 119.99995 * 359.97438 * 7 6 4 31 31 H 1.08997 * 110.96611 * 334.64198 * 14 12 2 32 32 H 1.08997 * 110.97166 * 98.40249 * 14 12 2 33 33 H 1.09002 * 110.24778 * 144.41809 * 15 14 12 34 34 H 1.09001 * 110.25040 * 266.32723 * 15 14 12 35 35 H 1.08010 * 125.83177 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.46743 * 269.96935 * 21 20 19 37 37 H 1.09001 * 109.47445 * 29.96926 * 21 20 19 38 38 H 1.09001 * 109.47023 * 149.97413 * 21 20 19 39 39 H 1.08001 * 126.22451 * 0.04360 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0267 3.3496 1.5283 7 7 2.7110 4.0023 0.6144 8 14 1.5828 4.1870 3.1380 9 1 2.1755 3.4300 4.2698 10 1 0.1057 4.2232 3.2863 11 1 2.1149 5.5735 3.1379 12 6 1.9955 -0.7659 -1.1375 13 1 1.7517 -0.2691 -2.0765 14 6 1.4342 -2.2067 -1.1260 15 6 2.6467 -3.0212 -1.6289 16 7 3.8271 -2.2216 -1.2806 17 6 5.1420 -2.7226 -1.2399 18 6 5.5322 -4.0416 -1.5137 19 7 6.8307 -4.1235 -1.3769 20 7 7.3153 -2.8641 -1.0014 21 6 8.7156 -2.5219 -0.7401 22 6 6.2572 -2.0162 -0.9236 23 6 3.4913 -0.9495 -1.0054 24 8 4.2740 -0.0756 -0.6967 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5611 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1083 30 1 2.9418 3.5673 -0.2214 31 1 1.1536 -2.5079 -0.1167 32 1 0.5900 -2.3020 -1.8088 33 1 2.6852 -3.9886 -1.1281 34 1 2.5875 -3.1582 -2.7086 35 1 4.8735 -4.8509 -1.7927 36 1 8.9383 -2.6838 0.3145 37 1 9.3635 -3.1522 -1.3492 38 1 8.8867 -1.4751 -0.9910 39 1 6.2960 -0.9702 -0.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177185834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 68.397678 kcal Electronic energy + Delta-G solvation = -21937.353760 eV Core-core repulsion = 18689.568204 eV Total energy + Delta-G solvation = -3247.785556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41223 -40.03406 -36.39078 -36.12117 -33.38406 -32.64828 -31.32293 -28.81822 -27.48208 -26.80968 -26.38551 -24.21452 -22.22298 -21.89774 -20.94995 -20.15482 -18.97191 -17.50459 -16.67406 -16.58378 -15.90121 -15.51836 -15.11576 -14.45448 -14.33807 -13.95655 -13.64290 -13.59529 -13.32750 -13.04235 -12.88376 -12.84074 -12.44437 -12.37619 -11.97651 -11.61563 -11.13460 -11.05591 -10.96741 -10.88334 -10.64195 -10.47381 -10.11848 -10.01319 -9.45504 -9.19241 -8.52630 -8.20621 -7.55081 -7.40346 -6.24937 -3.91609 1.79791 2.31656 2.45312 3.09240 3.29159 3.49117 3.53087 3.70903 4.34134 4.51314 4.60113 4.62322 4.75538 4.93834 5.03603 5.04672 5.16185 5.27485 5.28290 5.42527 5.51947 5.56428 5.60830 5.70905 5.82005 5.96774 6.09098 6.14814 6.20854 6.63742 6.79899 7.02728 7.10919 7.19684 7.28477 7.60970 7.83404 8.03452 8.38734 8.51360 8.67114 8.99084 9.78131 11.14861 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.004880 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.583273 B = 5735.965143 C = 6867.223764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.516 5.516 3 C 0.161 3.839 4 C -0.585 4.585 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.915 5.915 8 Si 1.072 2.928 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.284 1.284 12 C 0.052 3.948 13 H 0.070 0.930 14 C -0.126 4.126 15 C 0.108 3.892 16 N -0.542 5.542 17 C 0.016 3.984 18 C 0.034 3.966 19 N -0.287 5.287 20 N -0.375 5.375 21 C 0.108 3.892 22 C 0.037 3.963 23 C 0.527 3.473 24 O -0.494 6.494 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.079 0.921 28 H -0.025 1.025 29 H 0.063 0.937 30 H 0.268 0.732 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -16.827 -6.213 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.241 5.241 3 C 0.036 3.964 4 C -0.624 4.624 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.551 5.551 8 Si 0.900 3.100 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.209 1.209 12 C -0.060 4.060 13 H 0.087 0.913 14 C -0.164 4.164 15 C -0.015 4.015 16 N -0.270 5.270 17 C -0.087 4.087 18 C -0.154 4.154 19 N -0.109 5.109 20 N -0.161 5.161 21 C -0.033 4.033 22 C -0.110 4.110 23 C 0.315 3.685 24 O -0.366 6.366 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.098 0.902 28 H -0.007 1.007 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.289 -15.842 -4.801 17.378 hybrid contribution -1.212 -0.562 -1.585 2.072 sum 4.077 -16.404 -6.386 18.069 Atomic orbital electron populations 1.22271 0.87920 0.99531 1.01351 1.62171 1.07248 1.18147 1.36557 1.20310 0.97978 0.81476 0.96613 1.21912 1.38681 0.99662 1.02156 0.92792 1.25784 0.94619 0.94730 1.03877 1.70751 1.36479 1.39952 1.07961 0.83510 0.75871 0.76051 0.74534 1.21509 1.21595 1.20903 1.22180 0.91925 0.95665 0.96255 0.91253 1.22757 0.96661 0.93380 1.03590 1.22101 0.83656 0.95286 1.00411 1.45181 1.03904 1.10928 1.67031 1.17562 0.84516 0.93340 1.13235 1.23559 0.92708 0.95791 1.03334 1.77201 1.10733 1.01678 1.21284 1.48290 1.07085 1.06578 1.54177 1.21836 0.76734 1.02262 1.02516 1.22570 0.85911 0.98152 1.04336 1.20830 0.91220 0.80893 0.75568 1.90653 1.56705 1.44146 1.45120 0.96819 0.93135 0.90242 1.00727 0.91963 0.92186 0.88655 0.89334 0.90047 0.90806 0.79871 0.90710 0.89385 0.89263 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.10 60.07 0.55 1.25 16 2 N -0.52 -11.29 4.60 -236.35 -1.09 -12.38 16 3 C 0.16 4.39 3.91 -4.97 -0.02 4.37 16 4 C -0.59 -17.28 8.51 -34.44 -0.29 -17.57 16 5 H 0.05 1.57 7.10 -52.49 -0.37 1.20 16 6 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 7 N -0.91 -29.12 13.65 55.43 0.76 -28.36 16 8 Si 1.07 26.20 29.90 -169.99 -5.08 21.11 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.05 0.93 2.66 -67.73 -0.18 0.75 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 14 C -0.13 -1.52 5.43 -25.10 -0.14 -1.65 16 15 C 0.11 1.17 6.93 -3.13 -0.02 1.14 16 16 N -0.54 -8.35 3.16 -112.48 -0.36 -8.70 16 17 C 0.02 0.24 6.80 -83.88 -0.57 -0.33 16 18 C 0.03 0.43 11.53 -17.22 -0.20 0.23 16 19 N -0.29 -4.00 12.56 30.70 0.39 -3.61 16 20 N -0.38 -5.04 4.04 -67.82 -0.27 -5.32 16 21 C 0.11 0.95 11.48 59.85 0.69 1.63 16 22 C 0.04 0.58 10.69 -16.68 -0.18 0.40 16 23 C 0.53 10.25 7.55 -10.86 -0.08 10.16 16 24 O -0.49 -11.62 12.86 5.53 0.07 -11.55 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 0.74 6.61 -51.93 -0.34 0.40 16 27 H 0.08 1.64 6.86 -51.93 -0.36 1.28 16 28 H -0.02 -0.71 7.99 -51.93 -0.41 -1.13 16 29 H 0.06 1.86 5.01 -51.93 -0.26 1.60 16 30 H 0.27 8.63 7.22 -40.82 -0.29 8.33 16 31 H 0.09 1.19 7.63 -51.93 -0.40 0.80 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.18 1.66 8.06 -52.48 -0.42 1.23 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.19 3.20 6.51 -52.49 -0.34 2.85 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -37.13 320.24 -6.68 -43.81 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.38 Total: -0.52 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.54 Total: 0.69 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.57 Total: -58.37 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.13 -6.68 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177185834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.212 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds