Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99833 * 2 1 4 4 C 1.50695 * 109.47119 * 66.04239 * 3 2 1 5 5 H 1.07995 * 120.00496 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99572 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99951 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 59.99744 * 8 6 4 10 10 H 1.48503 * 109.47261 * 299.99924 * 8 6 4 11 11 H 1.48500 * 109.47454 * 179.97438 * 8 6 4 12 12 C 1.46895 * 111.00352 * 236.04541 * 2 1 3 13 13 H 1.09001 * 110.44054 * 66.49377 * 12 2 1 14 14 C 1.54631 * 110.48482 * 303.95198 * 12 2 1 15 15 C 1.54475 * 101.76607 * 216.52412 * 14 12 2 16 16 N 1.46762 * 105.47464 * 25.41458 * 15 14 12 17 17 C 1.40767 * 124.35114 * 162.97956 * 16 15 14 18 18 C 1.40248 * 126.08128 * 359.70123 * 17 16 15 19 19 N 1.30827 * 108.33708 * 179.81300 * 18 17 16 20 20 N 1.40070 * 108.36817 * 0.43944 * 19 18 17 21 21 C 1.46499 * 126.05296 * 179.74338 * 20 19 18 22 22 C 1.35753 * 126.07827 * 179.97438 * 17 16 15 23 23 C 1.34422 * 111.29956 * 342.98528 * 16 15 14 24 24 O 1.21309 * 124.93959 * 180.44456 * 23 16 15 25 25 H 1.08997 * 109.47053 * 60.00609 * 1 2 3 26 26 H 1.08996 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47062 * 300.00238 * 1 2 3 28 28 H 1.09002 * 109.46929 * 306.04189 * 3 2 1 29 29 H 1.08998 * 109.47035 * 186.05001 * 3 2 1 30 30 H 0.97006 * 119.99995 * 359.97438 * 7 6 4 31 31 H 1.08997 * 110.96611 * 334.64198 * 14 12 2 32 32 H 1.08997 * 110.97166 * 98.40249 * 14 12 2 33 33 H 1.09002 * 110.24778 * 144.41809 * 15 14 12 34 34 H 1.09001 * 110.25040 * 266.32723 * 15 14 12 35 35 H 1.08010 * 125.83177 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.46743 * 269.96935 * 21 20 19 37 37 H 1.09001 * 109.47445 * 29.96926 * 21 20 19 38 38 H 1.09001 * 109.47023 * 149.97413 * 21 20 19 39 39 H 1.08001 * 126.22451 * 0.04360 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0267 3.3496 1.5283 7 7 2.7110 4.0023 0.6144 8 14 1.5828 4.1870 3.1380 9 1 2.1755 3.4300 4.2698 10 1 0.1057 4.2232 3.2863 11 1 2.1149 5.5735 3.1379 12 6 1.9955 -0.7659 -1.1375 13 1 1.7517 -0.2691 -2.0765 14 6 1.4342 -2.2067 -1.1260 15 6 2.6467 -3.0212 -1.6289 16 7 3.8271 -2.2216 -1.2806 17 6 5.1420 -2.7226 -1.2399 18 6 5.5322 -4.0416 -1.5137 19 7 6.8307 -4.1235 -1.3769 20 7 7.3153 -2.8641 -1.0014 21 6 8.7156 -2.5219 -0.7401 22 6 6.2572 -2.0162 -0.9236 23 6 3.4913 -0.9495 -1.0054 24 8 4.2740 -0.0756 -0.6967 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5611 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1083 30 1 2.9418 3.5673 -0.2214 31 1 1.1536 -2.5079 -0.1167 32 1 0.5900 -2.3020 -1.8088 33 1 2.6852 -3.9886 -1.1281 34 1 2.5875 -3.1582 -2.7086 35 1 4.8735 -4.8509 -1.7927 36 1 8.9383 -2.6838 0.3145 37 1 9.3635 -3.1522 -1.3492 38 1 8.8867 -1.4751 -0.9910 39 1 6.2960 -0.9702 -0.6575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177185834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 40.002629 kcal Electronic energy + Delta-G solvation = -21938.585061 eV Core-core repulsion = 18689.568204 eV Total energy + Delta-G solvation = -3249.016857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54249 -41.30422 -38.01145 -37.55116 -35.03482 -34.11102 -32.58925 -29.99134 -28.74031 -28.69739 -27.42890 -25.99909 -23.61905 -23.31257 -22.35308 -21.24254 -20.30933 -18.90103 -18.57942 -17.94641 -17.04163 -16.75752 -16.49480 -15.72587 -15.60336 -15.51063 -15.28142 -15.01153 -14.72105 -14.49358 -14.00425 -13.95795 -13.58231 -13.47466 -13.41472 -13.32604 -12.91639 -12.65032 -12.40280 -12.29323 -12.21144 -11.99268 -11.92238 -11.18233 -10.86550 -10.67773 -10.48015 -10.37991 -9.19664 -8.69969 -8.65975 -6.34399 0.66660 1.18099 1.34223 1.50690 1.61324 1.80055 1.95488 2.08896 2.57106 3.16798 3.18814 3.23697 3.57838 3.65947 3.88265 4.02817 4.13358 4.21458 4.35830 4.37766 4.49380 4.54948 4.61039 4.63115 4.64085 4.70401 4.92111 4.95824 5.01784 5.14174 5.16455 5.28880 5.75710 5.78968 5.94094 5.96611 6.05276 6.36382 6.41585 6.55633 6.61477 7.11713 7.46499 8.72143 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.004880 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.583273 B = 5735.965143 C = 6867.223764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.528 5.528 3 C 0.174 3.826 4 C -0.596 4.596 5 H 0.055 0.945 6 C -0.043 4.043 7 N -0.940 5.940 8 Si 1.123 2.877 9 H -0.273 1.273 10 H -0.263 1.263 11 H -0.284 1.284 12 C 0.044 3.956 13 H 0.067 0.933 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.533 5.533 17 C -0.005 4.005 18 C 0.050 3.950 19 N -0.298 5.298 20 N -0.376 5.376 21 C 0.097 3.903 22 C 0.015 3.985 23 C 0.508 3.492 24 O -0.555 6.555 25 H 0.013 0.987 26 H 0.101 0.899 27 H 0.055 0.945 28 H -0.054 1.054 29 H 0.032 0.968 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -20.042 -6.118 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.253 5.253 3 C 0.048 3.952 4 C -0.634 4.634 5 H 0.073 0.927 6 C -0.239 4.239 7 N -0.577 5.577 8 Si 0.944 3.056 9 H -0.199 1.199 10 H -0.187 1.187 11 H -0.209 1.209 12 C -0.068 4.068 13 H 0.085 0.915 14 C -0.147 4.147 15 C -0.017 4.017 16 N -0.260 5.260 17 C -0.108 4.108 18 C -0.137 4.137 19 N -0.120 5.120 20 N -0.161 5.161 21 C -0.043 4.043 22 C -0.133 4.133 23 C 0.296 3.704 24 O -0.432 6.432 25 H 0.031 0.969 26 H 0.120 0.880 27 H 0.074 0.926 28 H -0.037 1.037 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.243 0.757 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.859 -19.150 -4.735 20.101 hybrid contribution -0.706 0.331 -1.681 1.853 sum 3.152 -18.819 -6.416 20.131 Atomic orbital electron populations 1.22313 0.85872 1.02426 1.00153 1.61997 1.09115 1.14905 1.39308 1.19906 0.96175 0.84509 0.94613 1.22293 1.38075 1.00096 1.02953 0.92656 1.27501 0.93715 0.96080 1.06652 1.70901 1.38561 1.40222 1.08060 0.82878 0.77256 0.74962 0.70529 1.19872 1.18749 1.20938 1.22378 0.91400 0.98620 0.94421 0.91507 1.22837 0.98379 0.88543 1.04989 1.22562 0.80730 0.95572 1.02882 1.45270 1.05366 1.10094 1.65232 1.17866 0.84247 0.94531 1.14119 1.24119 0.92578 0.95432 1.01609 1.77174 1.11497 1.01807 1.21559 1.48623 1.07923 1.06035 1.53549 1.22181 0.74975 1.03383 1.03714 1.22447 0.87606 0.97775 1.05441 1.21309 0.91784 0.81794 0.75500 1.90617 1.58109 1.46344 1.48138 0.96864 0.88035 0.92611 1.03695 0.95051 0.94202 0.88549 0.85292 0.86513 0.87539 0.75698 0.89559 0.87476 0.88354 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.10 127.69 1.16 2.61 16 2 N -0.53 -23.40 4.60 -901.67 -4.14 -27.54 16 3 C 0.17 10.03 3.91 85.55 0.33 10.36 16 4 C -0.60 -36.34 8.51 25.60 0.22 -36.12 16 5 H 0.06 3.28 7.10 -2.91 -0.02 3.26 16 6 C -0.04 -2.65 5.46 84.66 0.46 -2.19 16 7 N -0.94 -62.47 13.65 21.45 0.29 -62.18 16 8 Si 1.12 53.11 29.90 68.60 2.05 55.16 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.04 1.54 2.66 44.91 0.12 1.66 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.11 -2.20 5.43 31.65 0.17 -2.03 16 15 C 0.10 1.76 6.93 86.83 0.60 2.36 16 16 N -0.53 -15.71 3.16 -628.37 -1.99 -17.70 16 17 C 0.00 -0.15 6.80 37.62 0.26 0.11 16 18 C 0.05 1.13 11.53 85.33 0.98 2.12 16 19 N -0.30 -7.72 12.56 -56.77 -0.71 -8.43 16 20 N -0.38 -9.95 4.04 -368.48 -1.49 -11.44 16 21 C 0.10 1.66 11.48 127.77 1.47 3.13 16 22 C 0.01 0.48 10.69 83.50 0.89 1.37 16 23 C 0.51 20.29 7.55 87.90 0.66 20.96 16 24 O -0.55 -28.23 12.86 -3.12 -0.04 -28.27 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.10 2.63 6.61 -2.39 -0.02 2.61 16 27 H 0.06 2.27 6.86 -2.39 -0.02 2.26 16 28 H -0.05 -3.35 7.99 -2.39 -0.02 -3.37 16 29 H 0.03 2.03 5.01 -2.39 -0.01 2.02 16 30 H 0.25 17.14 7.22 -92.70 -0.67 16.47 16 31 H 0.10 1.98 7.63 -2.39 -0.02 1.96 16 32 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.23 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.17 6.15 6.51 -2.91 -0.02 6.14 16 Total: -1.00 -88.05 320.24 2.45 -85.59 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.15 Total: 10.48 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 7.33 Total: 4.33 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -8.04 Total: -127.29 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.04 Total: -28.27 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 2.05 Total: 55.16 kcal Total: -88.05 2.45 -85.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177185834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.597 kcal (2) G-P(sol) polarization free energy of solvation -88.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds