Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40069 * 126.03865 * 2 1 4 4 C 1.30837 * 108.38687 * 180.23429 * 3 2 1 5 5 C 1.39776 * 108.32390 * 359.77534 * 4 3 2 6 6 C 1.35247 * 126.04415 * 179.83945 * 2 1 3 7 7 N 1.39207 * 126.22257 * 0.04616 * 6 2 1 8 8 C 1.46852 * 110.99738 * 216.43758 * 7 6 2 9 9 C 1.53034 * 109.51202 * 174.15281 * 8 7 6 10 10 C 1.53115 * 109.28270 * 59.17927 * 9 8 7 11 11 C 1.53116 * 109.16368 * 302.34744 * 10 9 8 12 12 H 1.09003 * 109.49903 * 297.71177 * 11 10 9 13 13 N 1.46495 * 109.50694 * 177.58918 * 11 10 9 14 14 C 1.34783 * 119.99621 * 85.00061 * 13 11 10 15 15 O 1.21681 * 120.00110 * 359.97438 * 14 13 11 16 16 C 1.46372 * 119.99879 * 180.02562 * 14 13 11 17 17 H 1.08003 * 120.00024 * 0.02562 * 16 14 13 18 18 C 1.40050 * 119.99945 * 179.97438 * 16 14 13 19 19 N 1.30672 * 119.99968 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99935 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47453 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47147 * 119.99927 * 20 18 16 23 23 H 1.48496 * 109.47480 * 240.00417 * 20 18 16 24 24 C 1.46845 * 110.99434 * 92.22979 * 7 6 2 25 25 H 1.09004 * 109.47086 * 265.02192 * 1 2 3 26 26 H 1.08995 * 109.47175 * 25.02703 * 1 2 3 27 27 H 1.09004 * 109.46713 * 145.02656 * 1 2 3 28 28 H 1.08000 * 125.83731 * 179.80352 * 4 3 2 29 29 H 1.08005 * 126.09417 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.46251 * 54.14179 * 8 7 6 31 31 H 1.08997 * 109.45796 * 294.15806 * 8 7 6 32 32 H 1.08998 * 109.50484 * 179.12635 * 9 8 7 33 33 H 1.09007 * 109.50177 * 299.23993 * 9 8 7 34 34 H 1.09009 * 109.51768 * 62.25111 * 10 9 8 35 35 H 1.09002 * 109.52448 * 182.37382 * 10 9 8 36 36 H 0.96999 * 120.00635 * 265.00500 * 13 11 10 37 37 H 0.97004 * 119.99647 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.47170 * 65.83732 * 24 7 6 39 39 H 1.08997 * 109.45227 * 305.85300 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5359 0.7359 -0.0051 5 6 3.5523 -0.6618 -0.0033 6 6 2.2608 -1.0936 0.0031 7 7 1.8368 -2.4195 0.0059 8 6 2.7266 -3.2547 0.8227 9 6 2.1512 -4.6693 0.9219 10 6 2.0150 -5.2595 -0.4844 11 6 1.1231 -4.3453 -1.3289 12 1 0.1266 -4.3019 -0.8892 13 7 1.0343 -4.8726 -2.6928 14 6 0.1234 -5.8203 -2.9908 15 8 -0.6248 -6.2382 -2.1270 16 6 0.0350 -6.3476 -4.3534 17 1 0.6998 -5.9776 -5.1198 18 6 -0.9111 -7.3327 -4.6630 19 7 -1.7152 -7.7808 -3.7355 20 14 -1.0245 -8.0052 -6.4021 21 1 -0.0111 -7.3376 -7.2580 22 1 -0.7706 -9.4682 -6.3846 23 1 -2.3814 -7.7447 -6.9461 24 6 1.7283 -2.9400 -1.3629 25 1 -0.3633 -0.0892 1.0238 26 1 -0.3633 0.9311 -0.4347 27 1 -0.3633 -0.8421 -0.5891 28 1 4.4039 1.3785 -0.0094 29 1 4.4324 -1.2877 -0.0060 30 1 2.8114 -2.8263 1.8214 31 1 3.7126 -3.2954 0.3599 32 1 2.8196 -5.2933 1.5152 33 1 1.1709 -4.6310 1.3970 34 1 3.0001 -5.3341 -0.9451 35 1 1.5663 -6.2509 -0.4215 36 1 1.6309 -4.5398 -3.3813 37 1 -2.3703 -8.4634 -3.9499 38 1 2.7191 -2.9822 -1.8152 39 1 1.0880 -2.2830 -1.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365700139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 46.772508 kcal Electronic energy + Delta-G solvation = -21798.087229 eV Core-core repulsion = 18549.363936 eV Total energy + Delta-G solvation = -3248.723293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44303 -38.95474 -36.95477 -33.95365 -33.23549 -32.49262 -32.05754 -29.41463 -28.46896 -26.77472 -26.07905 -24.23358 -22.72527 -21.21266 -20.46240 -19.44535 -19.39017 -17.43915 -17.23824 -15.69195 -15.43694 -15.33858 -14.73132 -14.64855 -14.27108 -14.14052 -13.74668 -13.61461 -13.31811 -13.11147 -12.67585 -12.52908 -12.43039 -12.32086 -12.08529 -11.22903 -11.10373 -11.05070 -10.81455 -10.67148 -10.49762 -10.40149 -10.22650 -10.18836 -9.47113 -8.88755 -8.83128 -8.34528 -7.64896 -7.56949 -6.21661 -4.67223 1.76616 2.34535 2.73294 3.10981 3.19531 3.23640 3.66243 4.09559 4.54933 4.55827 4.78338 4.88903 5.09578 5.10784 5.16012 5.22107 5.35450 5.42620 5.46047 5.49003 5.55478 5.62749 5.75331 5.77586 5.87938 5.93418 5.98094 6.24572 6.30226 6.48419 6.60233 6.71674 6.75180 6.84378 7.28806 7.40850 7.71783 7.88415 8.06030 8.29794 8.99965 9.48882 10.56815 10.75301 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.003914 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.472569 B = 7151.275560 C = 7519.132030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.361 5.361 3 N -0.299 5.299 4 C 0.053 3.947 5 C -0.308 4.308 6 C 0.274 3.726 7 N -0.487 5.487 8 C 0.071 3.929 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.162 3.838 12 H 0.085 0.915 13 N -0.763 5.763 14 C 0.557 3.443 15 O -0.577 6.577 16 C -0.545 4.545 17 H 0.067 0.933 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.907 3.093 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.063 3.937 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.145 0.855 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.046 0.954 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 11.622 6.905 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.144 5.144 3 N -0.121 5.121 4 C -0.132 4.132 5 C -0.340 4.340 6 C 0.051 3.949 7 N -0.210 5.210 8 C -0.056 4.056 9 C -0.153 4.153 10 C -0.170 4.170 11 C 0.055 3.945 12 H 0.103 0.897 13 N -0.417 5.417 14 C 0.361 3.639 15 O -0.460 6.460 16 C -0.582 4.582 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.064 4.064 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.198 0.802 29 H 0.162 0.838 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.010 12.152 7.796 16.049 hybrid contribution 1.526 -0.828 -1.495 2.292 sum 8.536 11.323 6.301 15.517 Atomic orbital electron populations 1.21845 0.74009 1.04330 1.03545 1.48579 1.06728 1.02765 1.56340 1.77398 1.01834 1.06899 1.25995 1.23610 0.95191 0.94840 0.99584 1.21486 0.96306 0.95644 1.20604 1.19153 0.89191 0.86457 1.00077 1.58397 1.51313 0.97449 1.13793 1.22155 0.93407 0.93299 0.96699 1.21596 1.01910 0.93689 0.98136 1.22042 0.99865 1.00892 0.94205 1.20399 0.99316 0.88858 0.85912 0.89729 1.46171 1.41599 1.45602 1.08350 1.18206 0.78503 0.77619 0.89600 1.90600 1.44299 1.61005 1.50080 1.20919 1.20036 1.23039 0.94249 0.91441 1.25695 0.94163 0.95258 0.98054 1.70028 1.14589 1.22020 1.32948 0.86336 0.78672 0.78988 0.82875 1.18805 1.20164 1.20167 1.22416 1.00481 0.97297 0.86158 0.90698 0.89561 0.89109 0.80190 0.83760 0.90526 0.93659 0.91091 0.90841 0.92658 0.90594 0.79010 0.92163 0.93621 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 11.39 59.85 0.68 1.82 16 2 N -0.36 -4.90 4.02 -67.24 -0.27 -5.17 16 3 N -0.30 -4.14 12.56 30.60 0.38 -3.75 16 4 C 0.05 0.62 12.01 -17.40 -0.21 0.41 16 5 C -0.31 -3.77 9.91 -39.75 -0.39 -4.16 16 6 C 0.27 3.70 5.83 -153.41 -0.89 2.80 16 7 N -0.49 -6.59 4.63 -173.27 -0.80 -7.39 16 8 C 0.07 0.85 4.88 -3.83 -0.02 0.84 16 9 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 10 C -0.13 -2.17 5.58 -26.61 -0.15 -2.31 16 11 C 0.16 2.95 2.61 -67.85 -0.18 2.77 16 12 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 13 N -0.76 -16.28 5.08 -55.14 -0.28 -16.56 16 14 C 0.56 15.30 7.71 -12.99 -0.10 15.20 16 15 O -0.58 -18.07 14.68 5.21 0.08 -18.00 16 16 C -0.55 -15.08 9.54 -35.63 -0.34 -15.42 16 17 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 18 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 19 N -0.77 -22.63 11.83 55.55 0.66 -21.97 16 20 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 16 21 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 C 0.06 0.94 4.87 -3.83 -0.02 0.92 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.14 1.52 7.42 -52.48 -0.39 1.14 16 30 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.38 7.17 8.58 -40.82 -0.35 6.82 16 37 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -34.10 326.12 -7.93 -42.03 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.71 Total: 7.54 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.88 Total: 3.53 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.31 Total: -54.84 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.08 Total: -18.00 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.10 -7.93 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365700139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.800 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds