Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40069 * 126.03865 * 2 1 4 4 C 1.30837 * 108.38687 * 180.23429 * 3 2 1 5 5 C 1.39776 * 108.32390 * 359.77534 * 4 3 2 6 6 C 1.35247 * 126.04415 * 179.83945 * 2 1 3 7 7 N 1.39207 * 126.22257 * 0.04616 * 6 2 1 8 8 C 1.46852 * 110.99738 * 216.43758 * 7 6 2 9 9 C 1.53034 * 109.51202 * 174.15281 * 8 7 6 10 10 C 1.53115 * 109.28270 * 59.17927 * 9 8 7 11 11 C 1.53116 * 109.16368 * 302.34744 * 10 9 8 12 12 H 1.09003 * 109.49903 * 297.71177 * 11 10 9 13 13 N 1.46495 * 109.50694 * 177.58918 * 11 10 9 14 14 C 1.34783 * 119.99621 * 85.00061 * 13 11 10 15 15 O 1.21681 * 120.00110 * 359.97438 * 14 13 11 16 16 C 1.46372 * 119.99879 * 180.02562 * 14 13 11 17 17 H 1.08003 * 120.00024 * 0.02562 * 16 14 13 18 18 C 1.40050 * 119.99945 * 179.97438 * 16 14 13 19 19 N 1.30672 * 119.99968 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99935 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47453 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47147 * 119.99927 * 20 18 16 23 23 H 1.48496 * 109.47480 * 240.00417 * 20 18 16 24 24 C 1.46845 * 110.99434 * 92.22979 * 7 6 2 25 25 H 1.09004 * 109.47086 * 265.02192 * 1 2 3 26 26 H 1.08995 * 109.47175 * 25.02703 * 1 2 3 27 27 H 1.09004 * 109.46713 * 145.02656 * 1 2 3 28 28 H 1.08000 * 125.83731 * 179.80352 * 4 3 2 29 29 H 1.08005 * 126.09417 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.46251 * 54.14179 * 8 7 6 31 31 H 1.08997 * 109.45796 * 294.15806 * 8 7 6 32 32 H 1.08998 * 109.50484 * 179.12635 * 9 8 7 33 33 H 1.09007 * 109.50177 * 299.23993 * 9 8 7 34 34 H 1.09009 * 109.51768 * 62.25111 * 10 9 8 35 35 H 1.09002 * 109.52448 * 182.37382 * 10 9 8 36 36 H 0.96999 * 120.00635 * 265.00500 * 13 11 10 37 37 H 0.97004 * 119.99647 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.47170 * 65.83732 * 24 7 6 39 39 H 1.08997 * 109.45227 * 305.85300 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5359 0.7359 -0.0051 5 6 3.5523 -0.6618 -0.0033 6 6 2.2608 -1.0936 0.0031 7 7 1.8368 -2.4195 0.0059 8 6 2.7266 -3.2547 0.8227 9 6 2.1512 -4.6693 0.9219 10 6 2.0150 -5.2595 -0.4844 11 6 1.1231 -4.3453 -1.3289 12 1 0.1266 -4.3019 -0.8892 13 7 1.0343 -4.8726 -2.6928 14 6 0.1234 -5.8203 -2.9908 15 8 -0.6248 -6.2382 -2.1270 16 6 0.0350 -6.3476 -4.3534 17 1 0.6998 -5.9776 -5.1198 18 6 -0.9111 -7.3327 -4.6630 19 7 -1.7152 -7.7808 -3.7355 20 14 -1.0245 -8.0052 -6.4021 21 1 -0.0111 -7.3376 -7.2580 22 1 -0.7706 -9.4682 -6.3846 23 1 -2.3814 -7.7447 -6.9461 24 6 1.7283 -2.9400 -1.3629 25 1 -0.3633 -0.0892 1.0238 26 1 -0.3633 0.9311 -0.4347 27 1 -0.3633 -0.8421 -0.5891 28 1 4.4039 1.3785 -0.0094 29 1 4.4324 -1.2877 -0.0060 30 1 2.8114 -2.8263 1.8214 31 1 3.7126 -3.2954 0.3599 32 1 2.8196 -5.2933 1.5152 33 1 1.1709 -4.6310 1.3970 34 1 3.0001 -5.3341 -0.9451 35 1 1.5663 -6.2509 -0.4215 36 1 1.6309 -4.5398 -3.3813 37 1 -2.3703 -8.4634 -3.9499 38 1 2.7191 -2.9822 -1.8152 39 1 1.0880 -2.2830 -1.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365700139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 21.846865 kcal Electronic energy + Delta-G solvation = -21799.168086 eV Core-core repulsion = 18549.363936 eV Total energy + Delta-G solvation = -3249.804150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41452 -40.32447 -38.76447 -35.54558 -34.52288 -34.18683 -33.47215 -30.86840 -29.61878 -28.06487 -27.66380 -25.40762 -24.05346 -22.36227 -21.78686 -21.03867 -20.55695 -19.17204 -18.45060 -17.48713 -16.65786 -16.57846 -16.18688 -15.88485 -15.67991 -15.36870 -15.14429 -14.77614 -14.55333 -14.37539 -14.11753 -13.97646 -13.64102 -13.51444 -13.27371 -13.03563 -12.81282 -12.62018 -12.34805 -12.01085 -11.93341 -11.81468 -11.76872 -11.47221 -10.93935 -10.48711 -9.84594 -9.79632 -9.46774 -9.32651 -8.28504 -6.84741 0.78500 1.40168 1.40484 1.42724 1.58206 1.83620 2.24131 2.48253 2.59677 3.24766 3.58211 3.68614 3.73646 3.88840 4.01248 4.17015 4.26573 4.27793 4.37172 4.42712 4.51833 4.60079 4.63928 4.66288 4.69998 4.84478 4.87868 5.03718 5.07749 5.29585 5.33044 5.37439 5.50148 5.72832 5.76908 5.89500 6.24070 6.29170 6.30981 6.78426 6.88072 7.55393 8.50972 8.68687 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.003914 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.472569 B = 7151.275560 C = 7519.132030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.373 5.373 3 N -0.325 5.325 4 C 0.055 3.945 5 C -0.304 4.304 6 C 0.256 3.744 7 N -0.494 5.494 8 C 0.075 3.925 9 C -0.106 4.106 10 C -0.124 4.124 11 C 0.163 3.837 12 H 0.044 0.956 13 N -0.751 5.751 14 C 0.543 3.457 15 O -0.627 6.627 16 C -0.573 4.573 17 H 0.086 0.914 18 C 0.030 3.970 19 N -0.821 5.821 20 Si 0.996 3.004 21 H -0.248 1.248 22 H -0.269 1.269 23 H -0.270 1.270 24 C 0.082 3.918 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.215 0.785 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.393 0.607 37 H 0.274 0.726 38 H 0.062 0.938 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.498 12.626 6.080 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.157 5.157 3 N -0.148 5.148 4 C -0.130 4.130 5 C -0.336 4.336 6 C 0.034 3.966 7 N -0.217 5.217 8 C -0.051 4.051 9 C -0.144 4.144 10 C -0.163 4.163 11 C 0.057 3.943 12 H 0.063 0.937 13 N -0.404 5.404 14 C 0.347 3.653 15 O -0.514 6.514 16 C -0.610 4.610 17 H 0.104 0.896 18 C -0.185 4.185 19 N -0.451 5.451 20 Si 0.815 3.185 21 H -0.170 1.170 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.045 4.045 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.231 0.769 29 H 0.182 0.818 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.385 13.205 6.981 17.641 hybrid contribution 0.835 -1.078 -1.171 1.797 sum 10.220 12.127 5.811 16.890 Atomic orbital electron populations 1.21926 0.73389 1.04578 1.04062 1.48802 1.07390 1.02861 1.56636 1.77376 1.02883 1.07474 1.27023 1.24218 0.95474 0.95273 0.97996 1.21786 0.96279 0.96133 1.19410 1.19291 0.89933 0.86086 1.01326 1.58268 1.52512 0.98039 1.12887 1.22197 0.93601 0.91846 0.97467 1.21542 1.02058 0.95083 0.95737 1.21926 0.99553 0.98377 0.96473 1.20443 0.98144 0.91606 0.84101 0.93725 1.45805 1.40318 1.44113 1.10208 1.18529 0.78874 0.78368 0.89574 1.90558 1.46482 1.62980 1.51366 1.21461 1.20923 1.23774 0.94858 0.89555 1.26929 0.93109 0.95102 1.03365 1.70193 1.15684 1.23014 1.36178 0.84999 0.79167 0.78242 0.76051 1.17049 1.19391 1.19478 1.22089 1.00611 0.94411 0.87414 0.89845 0.88381 0.90012 0.76863 0.81788 0.88904 0.91793 0.88400 0.92343 0.90993 0.94861 0.77329 0.91644 0.91980 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 11.39 127.77 1.46 3.64 16 2 N -0.37 -9.67 4.02 -366.64 -1.47 -11.15 16 3 N -0.32 -8.40 12.56 -57.09 -0.72 -9.12 16 4 C 0.06 1.13 12.01 85.21 1.02 2.16 16 5 C -0.30 -6.46 9.91 22.16 0.22 -6.24 16 6 C 0.26 6.41 5.83 131.43 0.77 7.18 16 7 N -0.49 -12.70 4.63 -702.09 -3.25 -15.95 16 8 C 0.08 1.61 4.88 86.32 0.42 2.03 16 9 C -0.11 -2.65 6.09 30.64 0.19 -2.46 16 10 C -0.12 -4.15 5.58 30.67 0.17 -3.98 16 11 C 0.16 6.11 2.61 45.05 0.12 6.22 16 12 H 0.04 2.03 7.58 -2.39 -0.02 2.01 16 13 N -0.75 -32.75 5.08 -446.57 -2.27 -35.01 16 14 C 0.54 30.95 7.71 86.36 0.67 31.61 16 15 O -0.63 -41.48 14.68 -4.29 -0.06 -41.55 16 16 C -0.57 -32.12 9.54 24.83 0.24 -31.89 16 17 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 18 C 0.03 1.66 5.50 85.31 0.47 2.13 16 19 N -0.82 -50.01 11.83 21.84 0.26 -49.75 16 20 Si 1.00 40.65 29.56 68.60 2.03 42.68 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 C 0.08 2.36 4.87 86.33 0.42 2.78 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.21 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.16 2.75 7.42 -2.91 -0.02 2.73 16 30 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 31 H 0.06 1.17 7.37 -2.39 -0.02 1.15 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.39 14.76 8.58 -92.71 -0.80 13.96 16 37 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -77.31 326.12 0.93 -76.38 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.26 Total: 30.29 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.15 Total: 13.17 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -7.45 Total: -120.98 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.06 Total: -41.55 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -77.31 0.93 -76.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365700139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.227 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds