Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34253 * 125.75223 * 2 1 4 4 C 1.38049 * 107.41621 * 179.97438 * 3 2 1 5 5 C 1.47434 * 126.41345 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99991 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99688 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99701 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46729 * 180.85308 * 8 7 5 10 10 N 1.46494 * 112.84928 * 292.10231 * 9 8 7 11 11 C 1.36933 * 120.00316 * 294.88813 * 10 9 8 12 12 H 1.07999 * 119.99741 * 353.69423 * 11 10 9 13 13 C 1.38817 * 120.00263 * 173.69010 * 11 10 9 14 14 N 1.31622 * 119.99652 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00038 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47534 * 59.99821 * 15 13 11 17 17 H 1.48504 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47040 * 299.99716 * 15 13 11 19 19 C 1.53780 * 113.61135 * 160.90739 * 9 8 7 20 20 C 1.53955 * 87.02274 * 220.04565 * 19 9 8 21 21 C 1.53777 * 113.61671 * 63.30439 * 9 8 7 22 22 C 1.41288 * 107.17071 * 0.23669 * 4 3 2 23 23 N 1.30452 * 108.02138 * 359.59689 * 22 4 3 24 24 H 1.08996 * 109.46634 * 90.00359 * 1 2 3 25 25 H 1.09001 * 109.47088 * 210.00375 * 1 2 3 26 26 H 1.08994 * 109.46955 * 330.00381 * 1 2 3 27 27 H 1.07995 * 126.29392 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99850 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.46526 * 300.85026 * 8 7 5 30 30 H 1.08993 * 109.47247 * 60.85067 * 8 7 5 31 31 H 0.97001 * 120.00077 * 114.88931 * 10 9 8 32 32 H 0.97003 * 119.99532 * 179.97438 * 14 13 11 33 33 H 1.09003 * 113.61805 * 334.57136 * 19 9 8 34 34 H 1.09004 * 113.61271 * 105.46955 * 19 9 8 35 35 H 1.08992 * 113.53752 * 270.81796 * 20 19 9 36 36 H 1.08997 * 113.66699 * 139.93139 * 20 19 9 37 37 H 1.09001 * 113.61607 * 254.53119 * 21 9 8 38 38 H 1.09009 * 113.61403 * 25.42843 * 21 9 8 39 39 H 1.08005 * 125.98922 * 179.73377 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0006 5 6 4.7639 1.5062 0.0003 6 8 4.6526 2.7171 -0.0011 7 7 5.9878 0.9419 0.0004 8 6 7.1842 1.7874 0.0007 9 6 8.4331 0.9038 -0.0207 10 7 8.6146 0.1453 1.2194 11 6 8.8625 0.8033 2.3944 12 1 9.0255 1.8709 2.3915 13 6 8.9044 0.0981 3.5894 14 7 8.7052 -1.2030 3.5930 15 14 9.2419 0.9958 5.1923 16 1 8.1906 2.0201 5.4170 17 1 9.2346 0.0238 6.3150 18 1 10.5697 1.6570 5.1193 19 6 9.7011 1.6406 -0.4833 20 6 10.0646 0.3613 -1.2588 21 6 8.5597 0.0467 -1.2912 22 6 3.5312 -0.7573 -0.0046 23 7 2.2827 -1.1356 0.0006 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9166 2.1169 -0.0004 28 1 6.0765 -0.0241 0.0011 29 1 7.1768 2.4275 -0.8816 30 1 7.1919 2.4057 0.8982 31 1 8.5591 -0.8231 1.2082 32 1 8.7348 -1.6958 4.4280 33 1 9.4983 2.4977 -1.1255 34 1 10.3920 1.8720 0.3274 35 1 10.6471 -0.3511 -0.6746 36 1 10.4920 0.5528 -2.2430 37 1 8.3303 -1.0069 -1.1318 38 1 8.0442 0.4672 -2.1548 39 1 4.3920 -1.4096 -0.0096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717147216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 74.864410 kcal Electronic energy + Delta-G solvation = -21585.159307 eV Core-core repulsion = 18337.654170 eV Total energy + Delta-G solvation = -3247.505137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27683 -39.22729 -38.07481 -33.88386 -33.35786 -33.18199 -30.37576 -29.94019 -27.88006 -26.41352 -25.24863 -23.84287 -22.63597 -21.50684 -20.87095 -19.72047 -18.31317 -17.67589 -17.06313 -15.80098 -15.69566 -15.43865 -15.01844 -14.55105 -14.36701 -14.29477 -13.89025 -13.32682 -13.21458 -12.94693 -12.87942 -12.68542 -12.49838 -11.95669 -11.70549 -11.19996 -11.03204 -10.96743 -10.79998 -10.34127 -10.21820 -10.05840 -9.69234 -9.60425 -9.49795 -9.39431 -8.83805 -8.72144 -8.29140 -7.00315 -5.79166 -3.08485 1.60703 2.29961 2.30833 3.44955 3.49569 3.50885 3.76835 3.88519 4.40222 4.57445 4.74971 4.87297 4.96463 5.13384 5.23270 5.26618 5.32124 5.36177 5.47589 5.47988 5.59533 5.79986 5.85815 6.12555 6.18431 6.23469 6.36427 6.43835 6.44813 6.61474 6.76476 6.76796 6.96970 7.03476 7.14747 7.52804 7.73133 8.13883 8.39902 8.79166 9.51085 10.04946 10.40232 11.42905 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005126 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.484331 B = 5461.335403 C = 6438.484714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.120 3.880 4 C -0.283 4.283 5 C 0.589 3.411 6 O -0.565 6.565 7 N -0.700 5.700 8 C 0.122 3.878 9 C 0.174 3.826 10 N -0.699 5.699 11 C -0.235 4.235 12 H 0.070 0.930 13 C -0.008 4.008 14 N -0.931 5.931 15 Si 0.904 3.096 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.151 4.151 20 C -0.129 4.129 21 C -0.144 4.144 22 C 0.086 3.914 23 N -0.302 5.302 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.186 0.814 28 H 0.399 0.601 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 1.542 -10.822 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.031 4.031 4 C -0.298 4.298 5 C 0.376 3.624 6 O -0.446 6.446 7 N -0.348 5.348 8 C -0.004 4.004 9 C 0.080 3.920 10 N -0.339 5.339 11 C -0.366 4.366 12 H 0.088 0.912 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.735 3.265 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.191 4.191 20 C -0.166 4.166 21 C -0.182 4.182 22 C -0.101 4.101 23 N -0.122 5.122 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.233 0.767 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.221 0.779 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -12.608 1.476 -10.641 16.564 hybrid contribution 0.703 0.370 1.107 1.362 sum -11.905 1.846 -9.535 15.364 Atomic orbital electron populations 1.21932 0.73822 1.04838 1.03607 1.48384 1.07057 1.03981 1.55519 1.22921 0.90209 0.93557 0.96421 1.20407 0.93726 0.93624 1.22051 1.17193 0.82401 0.86774 0.76035 1.90719 1.87087 1.14268 1.52511 1.45525 1.05014 1.10606 1.73664 1.21841 0.84190 0.93409 1.00952 1.20820 0.91472 0.92307 0.87365 1.42044 1.84915 1.05306 1.01683 1.19058 1.40472 0.92556 0.84536 0.91188 1.24706 1.02473 0.95673 0.97529 1.69641 1.56330 1.05734 1.26197 0.86319 0.78094 0.78500 0.83596 1.21246 1.21781 1.21252 1.23342 0.99825 0.96179 0.99754 1.22661 0.96014 0.98788 0.99144 1.23142 0.97134 1.00119 0.97833 1.24147 0.95249 0.94154 0.96584 1.77168 1.02026 1.07666 1.25334 0.90450 0.88994 0.89200 0.79668 0.76688 0.92752 0.91348 0.77939 0.93488 0.91327 0.90743 0.90077 0.92788 0.91654 0.90411 0.79172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.44 59.85 0.68 1.34 16 2 N -0.37 -4.37 3.98 -67.60 -0.27 -4.63 16 3 C 0.12 1.54 11.30 -16.56 -0.19 1.35 16 4 C -0.28 -4.36 6.13 -105.06 -0.64 -5.00 16 5 C 0.59 10.70 7.81 -12.51 -0.10 10.60 16 6 O -0.57 -11.87 16.90 5.28 0.09 -11.78 16 7 N -0.70 -12.29 5.41 -61.38 -0.33 -12.62 16 8 C 0.12 2.29 5.08 -4.04 -0.02 2.27 16 9 C 0.17 3.20 0.80 -131.01 -0.10 3.09 16 10 N -0.70 -16.04 5.18 -46.48 -0.24 -16.28 16 11 C -0.24 -6.20 9.04 -15.06 -0.14 -6.34 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 13 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -27.06 13.07 55.49 0.73 -26.34 16 15 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.15 -2.58 7.29 -25.83 -0.19 -2.77 16 20 C -0.13 -1.99 8.00 -25.83 -0.21 -2.20 16 21 C -0.14 -2.21 7.05 -25.92 -0.18 -2.39 16 22 C 0.09 1.23 11.50 -16.98 -0.20 1.04 16 23 N -0.30 -4.31 12.50 30.86 0.39 -3.92 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.40 6.50 7.26 -40.82 -0.30 6.20 16 29 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 30 H 0.07 1.49 7.80 -51.93 -0.41 1.09 16 31 H 0.39 9.43 7.87 -40.82 -0.32 9.10 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 34 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.08 1.06 8.10 -51.92 -0.42 0.64 16 39 H 0.19 2.32 7.50 -52.48 -0.39 1.92 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -33.20 334.28 -6.58 -39.78 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -5.58 Total: 12.80 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.37 Total: 0.68 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.27 Total: -63.80 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.20 -6.58 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717147216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.648 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds