Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34253 * 125.75223 * 2 1 4 4 C 1.38049 * 107.41621 * 179.97438 * 3 2 1 5 5 C 1.47434 * 126.41345 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99991 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99688 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99701 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46729 * 180.85308 * 8 7 5 10 10 N 1.46494 * 112.84928 * 292.10231 * 9 8 7 11 11 C 1.36933 * 120.00316 * 294.88813 * 10 9 8 12 12 H 1.07999 * 119.99741 * 353.69423 * 11 10 9 13 13 C 1.38817 * 120.00263 * 173.69010 * 11 10 9 14 14 N 1.31622 * 119.99652 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00038 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47534 * 59.99821 * 15 13 11 17 17 H 1.48504 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47040 * 299.99716 * 15 13 11 19 19 C 1.53780 * 113.61135 * 160.90739 * 9 8 7 20 20 C 1.53955 * 87.02274 * 220.04565 * 19 9 8 21 21 C 1.53777 * 113.61671 * 63.30439 * 9 8 7 22 22 C 1.41288 * 107.17071 * 0.23669 * 4 3 2 23 23 N 1.30452 * 108.02138 * 359.59689 * 22 4 3 24 24 H 1.08996 * 109.46634 * 90.00359 * 1 2 3 25 25 H 1.09001 * 109.47088 * 210.00375 * 1 2 3 26 26 H 1.08994 * 109.46955 * 330.00381 * 1 2 3 27 27 H 1.07995 * 126.29392 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99850 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.46526 * 300.85026 * 8 7 5 30 30 H 1.08993 * 109.47247 * 60.85067 * 8 7 5 31 31 H 0.97001 * 120.00077 * 114.88931 * 10 9 8 32 32 H 0.97003 * 119.99532 * 179.97438 * 14 13 11 33 33 H 1.09003 * 113.61805 * 334.57136 * 19 9 8 34 34 H 1.09004 * 113.61271 * 105.46955 * 19 9 8 35 35 H 1.08992 * 113.53752 * 270.81796 * 20 19 9 36 36 H 1.08997 * 113.66699 * 139.93139 * 20 19 9 37 37 H 1.09001 * 113.61607 * 254.53119 * 21 9 8 38 38 H 1.09009 * 113.61403 * 25.42843 * 21 9 8 39 39 H 1.08005 * 125.98922 * 179.73377 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0006 5 6 4.7639 1.5062 0.0003 6 8 4.6526 2.7171 -0.0011 7 7 5.9878 0.9419 0.0004 8 6 7.1842 1.7874 0.0007 9 6 8.4331 0.9038 -0.0207 10 7 8.6146 0.1453 1.2194 11 6 8.8625 0.8033 2.3944 12 1 9.0255 1.8709 2.3915 13 6 8.9044 0.0981 3.5894 14 7 8.7052 -1.2030 3.5930 15 14 9.2419 0.9958 5.1923 16 1 8.1906 2.0201 5.4170 17 1 9.2346 0.0238 6.3150 18 1 10.5697 1.6570 5.1193 19 6 9.7011 1.6406 -0.4833 20 6 10.0646 0.3613 -1.2588 21 6 8.5597 0.0467 -1.2912 22 6 3.5312 -0.7573 -0.0046 23 7 2.2827 -1.1356 0.0006 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.9166 2.1169 -0.0004 28 1 6.0765 -0.0241 0.0011 29 1 7.1768 2.4275 -0.8816 30 1 7.1919 2.4057 0.8982 31 1 8.5591 -0.8231 1.2082 32 1 8.7348 -1.6958 4.4280 33 1 9.4983 2.4977 -1.1255 34 1 10.3920 1.8720 0.3274 35 1 10.6471 -0.3511 -0.6746 36 1 10.4920 0.5528 -2.2430 37 1 8.3303 -1.0069 -1.1318 38 1 8.0442 0.4672 -2.1548 39 1 4.3920 -1.4096 -0.0096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717147216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = 50.981655 kcal Electronic energy + Delta-G solvation = -21586.194941 eV Core-core repulsion = 18337.654170 eV Total energy + Delta-G solvation = -3248.540771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31684 -40.65979 -39.50166 -35.28387 -35.16093 -34.25669 -31.91570 -31.39053 -29.09341 -27.48661 -26.68099 -25.67349 -23.91497 -22.82768 -21.87398 -21.01141 -19.73150 -19.12078 -18.84878 -17.03979 -16.82139 -16.65570 -16.50639 -16.02575 -15.71575 -15.53950 -15.40204 -15.03230 -14.59840 -14.21908 -13.85788 -13.69918 -13.43926 -13.39371 -13.04059 -12.92175 -12.86375 -12.54446 -12.19848 -12.09126 -11.90265 -11.55784 -11.44326 -10.99542 -10.84189 -10.68065 -10.57076 -10.01490 -9.56755 -8.94719 -7.91051 -5.17200 0.56000 1.15341 1.46512 1.47514 1.48149 1.53196 2.43207 2.56240 2.58019 3.40885 3.54421 3.79151 3.83073 3.86654 4.02657 4.10916 4.16953 4.18863 4.27826 4.43822 4.57977 4.65058 4.70204 4.80223 4.89199 4.95060 4.96701 5.06355 5.16972 5.35235 5.37742 5.46813 5.58122 5.68917 5.75703 5.89535 6.33391 6.49001 6.76116 7.39037 7.39887 8.14222 8.38007 9.31298 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005126 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.484331 B = 5461.335403 C = 6438.484714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.361 5.361 3 C 0.133 3.867 4 C -0.316 4.316 5 C 0.587 3.413 6 O -0.600 6.600 7 N -0.698 5.698 8 C 0.131 3.869 9 C 0.158 3.842 10 N -0.704 5.704 11 C -0.223 4.223 12 H 0.066 0.934 13 C -0.065 4.065 14 N -0.962 5.962 15 Si 0.956 3.044 16 H -0.288 1.288 17 H -0.296 1.296 18 H -0.279 1.279 19 C -0.149 4.149 20 C -0.120 4.120 21 C -0.127 4.127 22 C 0.083 3.917 23 N -0.323 5.323 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.211 0.789 28 H 0.405 0.595 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.377 0.623 32 H 0.249 0.751 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 1.990 -12.379 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.140 5.140 3 C -0.020 4.020 4 C -0.331 4.331 5 C 0.376 3.624 6 O -0.484 6.484 7 N -0.346 5.346 8 C 0.005 3.995 9 C 0.066 3.934 10 N -0.344 5.344 11 C -0.355 4.355 12 H 0.084 0.916 13 C -0.258 4.258 14 N -0.612 5.612 15 Si 0.786 3.214 16 H -0.215 1.215 17 H -0.223 1.223 18 H -0.206 1.206 19 C -0.189 4.189 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.104 4.104 23 N -0.144 5.144 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.228 0.772 28 H 0.240 0.760 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.211 0.789 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.818 1.921 -12.234 18.555 hybrid contribution 0.964 0.295 1.510 1.815 sum -12.854 2.216 -10.724 16.886 Atomic orbital electron populations 1.22413 0.70747 1.06577 1.05517 1.48804 1.08672 1.02981 1.53502 1.23294 0.89553 0.94785 0.94403 1.20310 0.93693 0.93891 1.25250 1.17584 0.83125 0.86633 0.75038 1.90685 1.87601 1.15754 1.54345 1.45503 1.04779 1.10783 1.73513 1.21676 0.84755 0.93331 0.99786 1.21123 0.91871 0.93313 0.87049 1.42084 1.84795 1.05043 1.02434 1.19279 1.38003 0.92399 0.85793 0.91607 1.25301 1.04050 0.96360 1.00075 1.69762 1.58615 1.06727 1.26122 0.85479 0.77970 0.77280 0.80652 1.21534 1.22262 1.20551 1.23362 0.98091 0.97863 0.99605 1.22586 0.96071 0.97027 1.00085 1.23100 0.97104 0.99801 0.96484 1.24319 0.95817 0.93915 0.96336 1.77120 1.02210 1.09065 1.26001 0.88413 0.88459 0.86354 0.77229 0.75989 0.91116 0.95196 0.78946 0.94256 0.88760 0.93421 0.92059 0.89633 0.91409 0.87777 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.44 127.77 1.46 2.33 16 2 N -0.36 -7.72 3.98 -367.78 -1.46 -9.19 16 3 C 0.13 3.16 11.30 84.28 0.95 4.11 16 4 C -0.32 -9.51 6.13 -20.15 -0.12 -9.64 16 5 C 0.59 21.24 7.81 86.67 0.68 21.92 16 6 O -0.60 -25.24 16.90 -4.04 -0.07 -25.30 16 7 N -0.70 -24.36 5.41 -466.37 -2.52 -26.89 16 8 C 0.13 4.86 5.08 86.38 0.44 5.30 16 9 C 0.16 5.71 0.80 4.13 0.00 5.71 16 10 N -0.70 -32.63 5.18 -300.98 -1.56 -34.19 16 11 C -0.22 -11.92 9.04 84.04 0.76 -11.16 16 12 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 13 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 14 N -0.96 -57.02 13.07 21.65 0.28 -56.74 16 15 Si 0.96 46.63 29.55 68.60 2.03 48.65 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 17 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 C -0.15 -4.90 7.29 31.18 0.23 -4.67 16 20 C -0.12 -3.45 8.00 31.18 0.25 -3.20 16 21 C -0.13 -3.59 7.05 31.12 0.22 -3.37 16 22 C 0.08 2.32 11.50 85.65 0.99 3.30 16 23 N -0.32 -8.81 12.50 -56.27 -0.70 -9.51 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.21 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.40 13.09 7.26 -92.71 -0.67 12.42 16 29 H 0.07 2.39 8.02 -2.39 -0.02 2.37 16 30 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 31 H 0.38 18.69 7.87 -92.71 -0.73 17.96 16 32 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.09 2.61 8.01 -2.39 -0.02 2.59 16 34 H 0.05 1.81 7.87 -2.38 -0.02 1.79 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.91 8.09 -2.39 -0.02 1.89 16 38 H 0.10 2.45 8.10 -2.38 -0.02 2.43 16 39 H 0.20 4.83 7.50 -2.91 -0.02 4.80 16 Total: -1.00 -72.71 334.28 1.98 -70.73 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.33 Total: 34.99 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.32 Total: 7.44 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -5.97 Total: -136.51 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.30 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -72.71 1.98 -70.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717147216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.714 kcal (2) G-P(sol) polarization free energy of solvation -72.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds