Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35038 * 124.88272 * 2 1 4 4 C 1.35370 * 107.22529 * 179.72971 * 3 2 1 5 5 C 1.41493 * 105.50577 * 0.41415 * 4 3 2 6 6 C 1.47709 * 126.52011 * 179.84478 * 5 4 3 7 7 O 1.21568 * 119.99825 * 359.71478 * 6 5 4 8 8 N 1.34777 * 119.99988 * 179.71134 * 6 5 4 9 9 C 1.46502 * 119.99798 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47175 * 180.02562 * 9 8 6 11 11 N 1.46502 * 109.47175 * 179.97438 * 10 9 8 12 12 C 1.36931 * 120.00148 * 270.00359 * 11 10 9 13 13 H 1.08001 * 120.00479 * 141.42504 * 12 11 10 14 14 C 1.38820 * 119.99908 * 321.42178 * 12 11 10 15 15 N 1.31619 * 119.99801 * 157.76854 * 14 12 11 16 16 Si 1.86797 * 119.99936 * 337.76961 * 14 12 11 17 17 H 1.48494 * 109.47472 * 95.67983 * 16 14 12 18 18 H 1.48510 * 109.47018 * 215.68151 * 16 14 12 19 19 H 1.48501 * 109.46998 * 335.67461 * 16 14 12 20 20 C 1.46497 * 119.99869 * 90.00163 * 11 10 9 21 21 C 1.52998 * 117.49918 * 183.18981 * 20 11 10 22 22 C 1.53005 * 117.50024 * 114.52945 * 20 11 10 23 23 N 1.28467 * 124.88768 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.46641 * 269.97095 * 1 2 3 25 25 H 1.08991 * 109.47541 * 29.97151 * 1 2 3 26 26 H 1.09003 * 109.47096 * 149.97480 * 1 2 3 27 27 H 1.08005 * 126.38675 * 359.97438 * 3 2 1 28 28 H 1.08004 * 127.24041 * 180.25934 * 4 3 2 29 29 H 0.97001 * 120.00032 * 0.02562 * 8 6 5 30 30 H 1.09007 * 109.46911 * 60.00006 * 9 8 6 31 31 H 1.08995 * 109.47227 * 300.00501 * 9 8 6 32 32 H 1.09003 * 109.46868 * 60.00495 * 10 9 8 33 33 H 1.08995 * 109.47415 * 300.00340 * 10 9 8 34 34 H 0.96999 * 119.99752 * 179.97438 * 15 14 12 35 35 H 1.08998 * 115.55168 * 328.86417 * 20 11 10 36 36 H 1.08993 * 117.49883 * 0.02562 * 21 20 11 37 37 H 1.09008 * 117.49720 * 145.02293 * 21 20 11 38 38 H 1.08998 * 117.49713 * 214.98178 * 22 20 11 39 39 H 1.08994 * 117.49515 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5272 0.6971 0.0061 5 6 3.4741 -0.7168 -0.0001 6 6 4.6273 -1.6397 -0.0002 7 8 5.7597 -1.1975 0.0002 8 7 4.4242 -2.9721 -0.0008 9 6 5.5680 -3.8875 -0.0014 10 6 5.0649 -5.3323 -0.0026 11 7 6.2088 -6.2477 -0.0038 12 6 6.7430 -6.6744 -1.1903 13 1 7.8126 -6.7833 -1.2928 14 6 5.9097 -6.9670 -2.2613 15 7 6.3844 -6.9480 -3.4888 16 14 4.1147 -7.3875 -1.9604 17 1 3.2858 -6.1666 -2.1254 18 1 3.6775 -8.4183 -2.9361 19 1 3.9539 -7.9124 -0.5806 20 6 6.7811 -6.7066 1.2642 21 6 8.0203 -7.6014 1.1973 22 6 6.6666 -8.1965 1.5930 23 7 2.1998 -1.0538 -0.0005 24 1 -0.3633 -0.0005 1.0278 25 1 -0.3634 0.8901 -0.5133 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8904 2.1306 -0.0004 28 1 4.4108 1.3182 0.0117 29 1 3.5206 -3.3249 -0.0014 30 1 6.1729 -3.7136 0.8886 31 1 6.1726 -3.7129 -0.8914 32 1 4.4603 -5.5058 -0.8928 33 1 4.4601 -5.5072 0.8872 34 1 5.8022 -7.1528 -4.2371 35 1 6.7135 -6.0017 2.0929 36 1 8.4099 -7.8484 0.2098 37 1 8.7678 -7.4856 1.9822 38 1 6.5240 -8.4717 2.6380 39 1 6.1650 -8.8351 0.8660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567454154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 77.907384 kcal Electronic energy + Delta-G solvation = -21225.952256 eV Core-core repulsion = 17978.579072 eV Total energy + Delta-G solvation = -3247.373184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.59091 -40.50224 -39.01462 -36.44515 -35.01900 -34.37314 -33.29442 -31.73863 -29.90825 -28.11575 -26.23230 -24.59494 -23.35170 -22.88630 -22.41493 -21.49283 -21.05406 -19.05143 -18.27326 -17.50273 -17.48356 -17.26291 -17.17950 -16.46329 -16.20039 -15.47964 -15.21574 -14.87368 -14.71124 -14.37585 -14.21728 -13.99302 -13.61865 -13.53124 -13.34808 -13.31569 -12.70570 -12.54359 -12.11724 -11.96508 -11.84576 -11.76497 -11.37055 -11.32224 -10.97357 -10.66234 -10.34659 -10.15168 -9.94926 -8.70721 -8.23364 -5.64560 0.49990 1.20728 1.26280 1.38377 1.50292 1.60640 2.12285 2.34376 2.38340 2.99819 3.20064 3.32885 3.38655 3.97089 4.01540 4.08032 4.18524 4.28218 4.39327 4.42638 4.46049 4.48190 4.56093 4.71394 4.76085 4.77474 4.89021 4.95594 5.01756 5.06678 5.27739 5.32047 5.39411 5.55001 5.90890 5.91410 6.18807 6.40640 6.88262 6.93860 7.13265 7.57194 7.97420 8.95458 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.004305 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.333284 B = 6502.973251 C = 7002.949979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.279 5.279 3 C 0.005 3.995 4 C -0.206 4.206 5 C -0.048 4.048 6 C 0.596 3.404 7 O -0.576 6.576 8 N -0.706 5.706 9 C 0.117 3.883 10 C 0.133 3.867 11 N -0.581 5.581 12 C -0.259 4.259 13 H 0.046 0.954 14 C -0.016 4.016 15 N -0.944 5.944 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.308 1.308 19 H -0.252 1.252 20 C 0.100 3.900 21 C -0.187 4.187 22 C -0.206 4.206 23 N -0.281 5.281 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.095 0.905 27 H 0.233 0.767 28 H 0.162 0.838 29 H 0.412 0.588 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.263 0.737 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 14.952 11.422 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.068 5.068 3 C -0.138 4.138 4 C -0.234 4.234 5 C -0.206 4.206 6 C 0.381 3.619 7 O -0.454 6.454 8 N -0.357 5.357 9 C -0.009 4.009 10 C 0.008 3.992 11 N -0.301 5.301 12 C -0.388 4.388 13 H 0.064 0.936 14 C -0.213 4.213 15 N -0.587 5.587 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.237 1.237 19 H -0.175 1.175 20 C -0.007 4.007 21 C -0.225 4.225 22 C -0.246 4.246 23 N -0.119 5.119 24 H 0.122 0.878 25 H 0.150 0.850 26 H 0.114 0.886 27 H 0.250 0.750 28 H 0.180 0.820 29 H 0.248 0.752 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.224 14.279 11.250 24.366 hybrid contribution -0.088 -0.097 -0.777 0.788 sum -16.312 14.183 10.473 24.019 Atomic orbital electron populations 1.22659 0.70149 1.07300 1.06240 1.45973 1.09472 1.02618 1.48776 1.23512 0.89441 0.95338 1.05489 1.22037 0.99293 0.92511 1.09570 1.21778 0.90579 0.94971 1.13285 1.17356 0.87020 0.81869 0.75607 1.90746 1.24417 1.77781 1.52505 1.45808 1.10993 1.05273 1.73612 1.21882 0.88217 0.89819 1.00948 1.21343 0.89901 0.87263 1.00737 1.43594 1.36008 1.49030 1.01477 1.18570 0.91533 1.40296 0.88434 0.93641 1.26113 1.02315 0.98116 0.94781 1.70002 1.38290 1.51498 0.98957 0.85939 0.81640 0.77600 0.78322 1.19765 1.23707 1.17522 1.21539 0.99379 0.90939 0.88838 1.23056 0.91709 1.05764 1.02014 1.23352 1.00519 0.99444 1.01281 1.73459 1.02655 1.15835 1.19961 0.87824 0.84996 0.88637 0.75031 0.82001 0.75231 0.91426 0.94516 0.93977 0.89794 0.92779 0.85720 0.91366 0.86956 0.86835 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.31 127.77 1.44 1.87 16 2 N -0.28 -4.79 3.70 -369.44 -1.37 -6.15 16 3 C 0.01 0.08 11.46 83.54 0.96 1.04 16 4 C -0.21 -5.02 10.81 22.41 0.24 -4.78 16 5 C -0.05 -1.49 7.13 42.45 0.30 -1.19 16 6 C 0.60 22.65 7.82 86.75 0.68 23.33 16 7 O -0.58 -25.85 16.93 -3.93 -0.07 -25.91 16 8 N -0.71 -25.59 5.55 -466.10 -2.59 -28.18 16 9 C 0.12 4.82 6.00 86.38 0.52 5.33 16 10 C 0.13 5.52 4.66 86.38 0.40 5.93 16 11 N -0.58 -27.16 2.39 -678.04 -1.62 -28.78 16 12 C -0.26 -14.68 8.95 84.04 0.75 -13.93 16 13 H 0.05 2.89 6.86 -2.91 -0.02 2.87 16 14 C -0.02 -0.95 5.30 84.86 0.45 -0.50 16 15 N -0.94 -59.73 13.97 21.65 0.30 -59.42 16 16 Si 0.94 45.68 25.08 68.60 1.72 47.40 16 17 H -0.27 -12.46 6.69 99.48 0.67 -11.80 16 18 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 19 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 20 C 0.10 3.86 6.56 44.99 0.30 4.16 16 21 C -0.19 -7.02 9.80 30.62 0.30 -6.72 16 22 C -0.21 -7.34 10.36 30.62 0.32 -7.03 16 23 N -0.28 -7.40 11.67 -48.18 -0.56 -7.96 16 24 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 25 H 0.13 -0.17 8.13 -2.39 -0.02 -0.19 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.23 0.90 8.06 -2.91 -0.02 0.88 16 28 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.41 13.12 8.20 -92.71 -0.76 12.36 16 30 H 0.07 2.69 8.14 -2.38 -0.02 2.68 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.91 3.40 -2.39 -0.01 1.90 16 33 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 36 H 0.07 3.06 6.44 -2.39 -0.02 3.04 16 37 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 38 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -80.57 331.02 2.74 -77.83 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.26 Total: 23.66 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.66 Total: 7.53 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.84 Total: -130.50 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.07 Total: -25.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.72 Total: 47.40 kcal Total: -80.57 2.74 -77.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567454154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.739 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds