Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35030 * 124.88160 * 2 1 4 4 C 1.35363 * 107.22918 * 179.72656 * 3 2 1 5 5 C 1.41500 * 105.50068 * 0.41808 * 4 3 2 6 6 C 1.47710 * 126.52095 * 179.84663 * 5 4 3 7 7 O 1.21573 * 119.99567 * 359.70657 * 6 5 4 8 8 N 1.34773 * 120.00621 * 179.71288 * 6 5 4 9 9 C 1.46500 * 120.00509 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.46593 * 324.99907 * 9 8 6 11 11 C 1.52998 * 109.47003 * 204.99732 * 9 8 6 12 12 N 1.46500 * 109.47071 * 55.00255 * 11 9 8 13 13 C 1.36942 * 120.00244 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99523 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00458 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00350 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99966 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47029 * 89.99755 * 17 15 13 19 19 H 1.48499 * 109.47003 * 209.99518 * 17 15 13 20 20 H 1.48496 * 109.46747 * 330.00003 * 17 15 13 21 21 C 1.52996 * 109.47073 * 84.99721 * 9 8 6 22 22 C 1.53002 * 117.49888 * 231.25527 * 21 9 8 23 23 C 1.53000 * 117.50107 * 299.91289 * 21 9 8 24 24 N 1.28463 * 124.88636 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47351 * 269.97167 * 1 2 3 26 26 H 1.09000 * 109.47353 * 29.97394 * 1 2 3 27 27 H 1.09000 * 109.47460 * 149.97582 * 1 2 3 28 28 H 1.08004 * 126.38799 * 0.02562 * 3 2 1 29 29 H 1.08004 * 127.25170 * 180.26097 * 4 3 2 30 30 H 0.97006 * 119.99568 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47096 * 174.99683 * 11 9 8 32 32 H 1.08996 * 109.47337 * 294.99987 * 11 9 8 33 33 H 0.96999 * 120.00125 * 359.97438 * 12 11 9 34 34 H 0.97001 * 120.00478 * 180.02562 * 16 15 13 35 35 H 1.09002 * 115.54951 * 85.58501 * 21 9 8 36 36 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 37 37 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 38 38 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 39 39 H 1.08999 * 117.49942 * 144.97366 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.1077 0.0000 4 6 3.5271 0.6972 0.0062 5 6 3.4740 -0.7168 -0.0001 6 6 4.6272 -1.6397 -0.0001 7 8 5.7597 -1.1975 0.0003 8 7 4.4242 -2.9721 -0.0008 9 6 5.5680 -3.8875 -0.0013 10 1 6.3775 -3.4569 -0.5907 11 6 5.1492 -5.2266 -0.6115 12 7 4.5815 -5.0003 -1.9429 13 6 4.1338 -6.0601 -2.6856 14 1 4.1996 -7.0629 -2.2899 15 6 3.5954 -5.8457 -3.9469 16 7 3.1656 -6.8644 -4.6609 17 14 3.4821 -4.1113 -4.6316 18 1 4.7244 -3.7926 -5.3800 19 1 2.3154 -4.0151 -5.5452 20 1 3.3166 -3.1478 -3.5139 21 6 6.0449 -4.1086 1.4355 22 6 7.5338 -3.9069 1.7246 23 6 6.5115 -2.8818 2.2217 24 7 2.1997 -1.0538 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.8904 2.1305 0.0004 29 1 4.4107 1.3182 0.0119 30 1 3.5206 -3.3249 -0.0008 31 1 6.0202 -5.8766 -0.6937 32 1 4.4022 -5.6988 0.0265 33 1 4.5220 -4.0996 -2.2981 34 1 2.7897 -6.7146 -5.5424 35 1 5.5268 -4.8929 1.9873 36 1 7.9952 -4.5585 2.4665 37 1 8.1734 -3.6162 0.8912 38 1 6.4791 -1.9171 1.7151 39 1 6.3000 -2.8588 3.2907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670556372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 90.206791 kcal Electronic energy + Delta-G solvation = -21755.490475 eV Core-core repulsion = 18508.650634 eV Total energy + Delta-G solvation = -3246.839841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65850 -39.61990 -37.12057 -35.11106 -33.65110 -33.27768 -31.34588 -30.72901 -28.71414 -27.29490 -24.07618 -23.03451 -22.08402 -21.52940 -21.25156 -20.23210 -19.84892 -18.04494 -17.44794 -16.49740 -16.36660 -15.97592 -15.20773 -14.88767 -14.34466 -14.17164 -13.89707 -13.60642 -13.35523 -13.17952 -12.86443 -12.78124 -12.73142 -12.16913 -11.86405 -11.24405 -11.22499 -11.02135 -10.90413 -10.83036 -10.19249 -10.13002 -9.94920 -9.73011 -9.57593 -9.32167 -9.11599 -8.90377 -8.65730 -7.23042 -5.75838 -3.11356 1.63118 2.09672 2.36856 3.36259 3.40182 3.45709 3.47600 3.59027 4.12535 4.27940 4.61319 4.65934 4.79896 4.80730 4.85604 5.10345 5.16324 5.22724 5.31226 5.41122 5.54346 5.59009 5.66595 5.72093 5.82017 5.87504 5.98125 6.12990 6.32604 6.35903 6.45729 6.51947 6.63325 6.64974 6.89420 7.69159 7.97624 8.00133 8.42650 8.47810 9.22031 9.94612 10.14185 11.42359 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.007200 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.899555 B = 3887.778619 C = 5785.603902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.286 5.286 3 C -0.024 4.024 4 C -0.180 4.180 5 C -0.015 4.015 6 C 0.605 3.395 7 O -0.539 6.539 8 N -0.697 5.697 9 C 0.164 3.836 10 H 0.090 0.910 11 C 0.153 3.847 12 N -0.755 5.755 13 C -0.243 4.243 14 H 0.092 0.908 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.276 1.276 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.185 4.185 24 N -0.255 5.255 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.410 0.590 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 16.057 14.068 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.075 5.075 3 C -0.167 4.167 4 C -0.208 4.208 5 C -0.175 4.175 6 C 0.390 3.610 7 O -0.416 6.416 8 N -0.347 5.347 9 C 0.059 3.941 10 H 0.108 0.892 11 C 0.026 3.974 12 N -0.401 5.401 13 C -0.373 4.373 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.711 3.289 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.183 4.183 22 C -0.207 4.207 23 C -0.222 4.222 24 N -0.092 5.092 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.198 0.802 29 H 0.179 0.821 30 H 0.246 0.754 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.004 15.181 13.982 20.857 hybrid contribution -0.264 1.731 -0.628 1.860 sum -3.268 16.912 13.354 21.795 Atomic orbital electron populations 1.22180 0.73253 1.05625 1.04366 1.45421 1.07838 1.03142 1.51080 1.22835 0.91053 0.93693 1.09078 1.21771 0.97262 0.93562 1.08216 1.22027 0.90826 0.94253 1.10384 1.16858 0.86460 0.81700 0.76003 1.90692 1.22405 1.77275 1.51188 1.45896 1.11033 1.04917 1.72877 1.20918 0.88762 0.90702 0.93681 0.89214 1.20899 0.97226 0.92378 0.86942 1.42706 1.75515 1.06368 1.15530 1.19044 1.32795 0.88546 0.96878 0.89068 1.24628 1.00858 0.96507 0.96872 1.69697 1.47262 1.28870 1.12308 0.86597 0.77451 0.85944 0.78913 1.21070 1.21811 1.20263 1.22622 0.97597 1.01154 0.96906 1.22904 0.91541 1.02868 1.03419 1.23267 1.03508 0.96048 0.99378 1.73595 1.03089 1.13946 1.18543 0.89726 0.88693 0.88304 0.80198 0.82085 0.75396 0.93647 0.94861 0.80393 0.93094 0.87663 0.89118 0.88693 0.86510 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.31 59.85 0.68 1.23 16 2 N -0.29 -3.27 3.70 -68.13 -0.25 -3.52 16 3 C -0.02 -0.25 11.46 -17.17 -0.20 -0.44 16 4 C -0.18 -2.37 10.81 -39.37 -0.43 -2.79 16 5 C -0.01 -0.23 7.13 -82.77 -0.59 -0.82 16 6 C 0.61 10.71 7.16 -12.39 -0.09 10.63 16 7 O -0.54 -10.31 13.95 5.30 0.07 -10.24 16 8 N -0.70 -12.06 4.49 -54.80 -0.25 -12.31 16 9 C 0.16 2.80 2.43 -67.93 -0.17 2.64 16 10 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 11 C 0.15 2.99 5.80 -4.04 -0.02 2.96 16 12 N -0.76 -18.30 5.24 -59.91 -0.31 -18.62 16 13 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 14 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 15 C 0.01 0.21 5.50 -17.44 -0.10 0.12 16 16 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 17 Si 0.88 23.00 27.74 -169.99 -4.71 18.29 16 18 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 19 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 20 H -0.28 -6.99 6.52 56.52 0.37 -6.63 16 21 C -0.16 -2.36 5.36 -90.62 -0.49 -2.85 16 22 C -0.17 -2.24 10.18 -26.69 -0.27 -2.51 16 23 C -0.19 -2.60 9.73 -26.70 -0.26 -2.86 16 24 N -0.26 -3.89 11.67 33.42 0.39 -3.50 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.41 7.13 8.33 -40.82 -0.34 6.79 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.36 8.92 5.19 -40.82 -0.21 8.71 16 34 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 35 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 38 H 0.12 1.89 5.02 -51.92 -0.26 1.63 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -35.40 330.32 -6.82 -42.22 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.43 Total: 13.36 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.08 Total: -1.80 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: 0.35 Total: -66.80 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.40 -6.82 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670556372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.426 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds