Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35030 * 124.88160 * 2 1 4 4 C 1.35363 * 107.22918 * 179.72656 * 3 2 1 5 5 C 1.41500 * 105.50068 * 0.41808 * 4 3 2 6 6 C 1.47710 * 126.52095 * 179.84663 * 5 4 3 7 7 O 1.21573 * 119.99567 * 359.70657 * 6 5 4 8 8 N 1.34773 * 120.00621 * 179.71288 * 6 5 4 9 9 C 1.46500 * 120.00509 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.46593 * 324.99907 * 9 8 6 11 11 C 1.52998 * 109.47003 * 204.99732 * 9 8 6 12 12 N 1.46500 * 109.47071 * 55.00255 * 11 9 8 13 13 C 1.36942 * 120.00244 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99523 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00458 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00350 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99966 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47029 * 89.99755 * 17 15 13 19 19 H 1.48499 * 109.47003 * 209.99518 * 17 15 13 20 20 H 1.48496 * 109.46747 * 330.00003 * 17 15 13 21 21 C 1.52996 * 109.47073 * 84.99721 * 9 8 6 22 22 C 1.53002 * 117.49888 * 231.25527 * 21 9 8 23 23 C 1.53000 * 117.50107 * 299.91289 * 21 9 8 24 24 N 1.28463 * 124.88636 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47351 * 269.97167 * 1 2 3 26 26 H 1.09000 * 109.47353 * 29.97394 * 1 2 3 27 27 H 1.09000 * 109.47460 * 149.97582 * 1 2 3 28 28 H 1.08004 * 126.38799 * 0.02562 * 3 2 1 29 29 H 1.08004 * 127.25170 * 180.26097 * 4 3 2 30 30 H 0.97006 * 119.99568 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47096 * 174.99683 * 11 9 8 32 32 H 1.08996 * 109.47337 * 294.99987 * 11 9 8 33 33 H 0.96999 * 120.00125 * 359.97438 * 12 11 9 34 34 H 0.97001 * 120.00478 * 180.02562 * 16 15 13 35 35 H 1.09002 * 115.54951 * 85.58501 * 21 9 8 36 36 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 37 37 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 38 38 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 39 39 H 1.08999 * 117.49942 * 144.97366 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.1077 0.0000 4 6 3.5271 0.6972 0.0062 5 6 3.4740 -0.7168 -0.0001 6 6 4.6272 -1.6397 -0.0001 7 8 5.7597 -1.1975 0.0003 8 7 4.4242 -2.9721 -0.0008 9 6 5.5680 -3.8875 -0.0013 10 1 6.3775 -3.4569 -0.5907 11 6 5.1492 -5.2266 -0.6115 12 7 4.5815 -5.0003 -1.9429 13 6 4.1338 -6.0601 -2.6856 14 1 4.1996 -7.0629 -2.2899 15 6 3.5954 -5.8457 -3.9469 16 7 3.1656 -6.8644 -4.6609 17 14 3.4821 -4.1113 -4.6316 18 1 4.7244 -3.7926 -5.3800 19 1 2.3154 -4.0151 -5.5452 20 1 3.3166 -3.1478 -3.5139 21 6 6.0449 -4.1086 1.4355 22 6 7.5338 -3.9069 1.7246 23 6 6.5115 -2.8818 2.2217 24 7 2.1997 -1.0538 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.8904 2.1305 0.0004 29 1 4.4107 1.3182 0.0119 30 1 3.5206 -3.3249 -0.0008 31 1 6.0202 -5.8766 -0.6937 32 1 4.4022 -5.6988 0.0265 33 1 4.5220 -4.0996 -2.2981 34 1 2.7897 -6.7146 -5.5424 35 1 5.5268 -4.8929 1.9873 36 1 7.9952 -4.5585 2.4665 37 1 8.1734 -3.6162 0.8912 38 1 6.4791 -1.9171 1.7151 39 1 6.3000 -2.8588 3.2907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670556372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 64.527692 kcal Electronic energy + Delta-G solvation = -21756.604005 eV Core-core repulsion = 18508.650634 eV Total energy + Delta-G solvation = -3247.953371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.58648 -40.94398 -38.42235 -36.77192 -35.08433 -34.33079 -33.32220 -31.72955 -30.24596 -28.22546 -25.83480 -24.25909 -23.16766 -22.98332 -22.41496 -21.47315 -21.08220 -19.84776 -18.71524 -17.68234 -17.29037 -17.12979 -16.71363 -16.44749 -16.06555 -15.45179 -15.04972 -14.81333 -14.77163 -14.66157 -14.20622 -13.81722 -13.60959 -13.49291 -13.36842 -12.96745 -12.74464 -12.62344 -12.29623 -12.13002 -11.91310 -11.86820 -11.41376 -11.16948 -11.06976 -10.94021 -10.27929 -10.10227 -9.92870 -9.35115 -8.06669 -5.39295 0.52608 1.21026 1.31159 1.32976 1.39460 1.61663 2.13829 2.35800 2.41889 3.00789 3.25498 3.37768 3.42414 3.82134 3.95926 4.01711 4.04162 4.14676 4.25601 4.39629 4.39943 4.47300 4.59300 4.68509 4.75122 4.76671 4.83723 4.86871 5.03719 5.06185 5.28636 5.32613 5.35580 5.51781 5.72607 5.91092 6.17165 6.43980 6.90074 7.02422 7.16713 7.78113 7.96407 9.14667 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.007200 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.899555 B = 3887.778619 C = 5785.603902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.282 5.282 3 C 0.002 3.998 4 C -0.204 4.204 5 C -0.051 4.051 6 C 0.601 3.399 7 O -0.562 6.562 8 N -0.699 5.699 9 C 0.174 3.826 10 H 0.072 0.928 11 C 0.153 3.847 12 N -0.758 5.758 13 C -0.229 4.229 14 H 0.067 0.933 15 C -0.054 4.054 16 N -0.978 5.978 17 Si 0.946 3.054 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.267 1.267 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.183 4.183 24 N -0.286 5.286 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.166 0.834 30 H 0.409 0.591 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.362 0.638 34 H 0.258 0.742 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 18.379 15.366 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.071 5.071 3 C -0.141 4.141 4 C -0.233 4.233 5 C -0.209 4.209 6 C 0.387 3.613 7 O -0.441 6.441 8 N -0.348 5.348 9 C 0.069 3.931 10 H 0.090 0.910 11 C 0.027 3.973 12 N -0.403 5.403 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.246 4.246 16 N -0.629 5.629 17 Si 0.775 3.225 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.192 1.192 21 C -0.189 4.189 22 C -0.196 4.196 23 C -0.220 4.220 24 N -0.124 5.124 25 H 0.123 0.877 26 H 0.150 0.850 27 H 0.108 0.892 28 H 0.248 0.752 29 H 0.184 0.816 30 H 0.244 0.756 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.195 0.805 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.838 17.508 15.325 23.582 hybrid contribution -0.058 1.012 -0.952 1.390 sum -3.896 18.520 14.373 23.764 Atomic orbital electron populations 1.22632 0.70473 1.07074 1.06221 1.45944 1.09405 1.02714 1.49012 1.23528 0.89684 0.95250 1.05678 1.22028 0.99135 0.92464 1.09625 1.21963 0.90797 0.95216 1.12959 1.17175 0.86925 0.81830 0.75354 1.90665 1.23462 1.77623 1.52305 1.45904 1.10807 1.05076 1.73045 1.20724 0.88192 0.89064 0.95100 0.91035 1.21042 0.97218 0.94120 0.84924 1.42719 1.75509 1.05169 1.16926 1.19056 1.31262 0.88665 0.96974 0.91528 1.25314 1.01597 1.00176 0.97532 1.69844 1.49123 1.31063 1.12822 0.85548 0.77202 0.81538 0.78261 1.21019 1.21671 1.19211 1.22545 0.98953 1.02077 0.95285 1.23004 0.90647 1.02410 1.03508 1.23201 1.03944 0.94858 1.00040 1.73521 1.03090 1.15909 1.19844 0.87659 0.84993 0.89178 0.75176 0.81639 0.75568 0.93199 0.93906 0.80494 0.93265 0.86222 0.86531 0.89473 0.88762 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 11.31 127.77 1.44 2.15 16 2 N -0.28 -5.70 3.70 -369.45 -1.37 -7.06 16 3 C 0.00 0.03 11.46 83.54 0.96 0.99 16 4 C -0.20 -5.11 10.81 22.41 0.24 -4.87 16 5 C -0.05 -1.63 7.13 42.46 0.30 -1.33 16 6 C 0.60 21.55 7.16 86.75 0.62 22.18 16 7 O -0.56 -21.97 13.95 -3.95 -0.06 -22.03 16 8 N -0.70 -24.31 4.49 -445.55 -2.00 -26.31 16 9 C 0.17 5.92 2.43 44.99 0.11 6.03 16 10 H 0.07 2.71 7.33 -2.39 -0.02 2.69 16 11 C 0.15 5.94 5.80 86.38 0.50 6.44 16 12 N -0.76 -36.72 5.24 -343.46 -1.80 -38.51 16 13 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 14 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 15 C -0.05 -3.26 5.50 84.86 0.47 -2.80 16 16 N -0.98 -63.20 13.97 21.65 0.30 -62.89 16 17 Si 0.95 48.08 27.74 68.60 1.90 49.98 16 18 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 20 H -0.27 -12.96 6.52 99.48 0.65 -12.31 16 21 C -0.17 -4.70 5.36 -10.79 -0.06 -4.75 16 22 C -0.16 -3.91 10.18 30.62 0.31 -3.60 16 23 C -0.18 -4.95 9.73 30.62 0.30 -4.65 16 24 N -0.29 -8.43 11.67 -48.18 -0.56 -8.99 16 25 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.13 0.29 8.13 -2.39 -0.02 0.27 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16 29 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.41 14.32 8.33 -92.70 -0.77 13.54 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.36 17.69 5.19 -92.71 -0.48 17.21 16 34 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.12 2.99 8.11 -2.39 -0.02 2.97 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.30 8.05 -2.39 -0.02 2.28 16 38 H 0.09 3.06 5.02 -2.38 -0.01 3.05 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -78.41 330.32 2.26 -76.15 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.24 Total: 36.24 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.08 Total: 3.43 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -5.43 Total: -143.77 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.90 Total: 49.98 kcal Total: -78.41 2.26 -76.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670556372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.673 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds