Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28437 * 125.18810 * 2 1 4 4 C 1.30868 * 110.92708 * 179.73719 * 3 2 1 5 5 C 1.39672 * 107.85830 * 0.02562 * 4 3 2 6 6 C 1.36596 * 125.18686 * 179.69884 * 2 1 3 7 7 C 1.47163 * 126.89081 * 0.26232 * 6 2 1 8 8 O 1.21628 * 119.99155 * 5.71357 * 7 6 2 9 9 N 1.34769 * 120.00108 * 185.70614 * 7 6 2 10 10 C 1.46504 * 119.99835 * 185.14221 * 9 7 6 11 11 C 1.52996 * 109.47478 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46866 * 65.00152 * 11 10 9 13 13 N 1.46505 * 109.47039 * 305.00555 * 11 10 9 14 14 C 1.36932 * 120.00215 * 154.99922 * 13 11 10 15 15 H 1.08003 * 120.00030 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99762 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99846 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47144 * 59.99777 * 18 16 14 20 20 H 1.48500 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47007 * 300.00134 * 18 16 14 22 22 C 1.52989 * 109.47660 * 185.00134 * 11 10 9 23 23 C 1.53000 * 117.50281 * 248.75083 * 22 11 10 24 24 C 1.52998 * 117.50544 * 180.08953 * 22 11 10 25 25 H 1.08998 * 109.47425 * 86.09113 * 1 2 3 26 26 H 1.08996 * 109.46850 * 206.09655 * 1 2 3 27 27 H 1.08996 * 109.46791 * 326.09371 * 1 2 3 28 28 H 1.07996 * 126.07089 * 180.02562 * 4 3 2 29 29 H 1.08002 * 127.31487 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00468 * 5.15389 * 9 7 6 31 31 H 1.09004 * 109.47144 * 300.00768 * 10 9 7 32 32 H 1.08997 * 109.46951 * 60.00417 * 10 9 7 33 33 H 0.97002 * 119.99487 * 334.99031 * 13 11 10 34 34 H 0.97006 * 119.99692 * 180.02562 * 17 16 14 35 35 H 1.09008 * 115.55169 * 34.41590 * 22 11 10 36 36 H 1.09005 * 117.49638 * 359.97438 * 23 22 11 37 37 H 1.08991 * 117.50714 * 145.01754 * 23 22 11 38 38 H 1.09003 * 117.50278 * 214.98689 * 24 22 11 39 39 H 1.09004 * 117.49488 * 359.97055 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0056 5 6 3.5611 -0.6667 0.0090 6 6 2.2522 -1.1164 0.0059 7 6 1.7993 -2.5166 0.0078 8 8 0.6153 -2.7728 -0.1008 9 7 2.6965 -3.5148 0.1299 10 6 2.2606 -4.9091 0.0190 11 6 3.4653 -5.8357 0.1948 12 1 3.8560 -5.7354 1.2075 13 7 4.5068 -5.4708 -0.7688 14 6 5.8175 -5.7665 -0.5051 15 1 6.0836 -6.2684 0.4135 16 6 6.8042 -5.4212 -1.4184 17 7 6.4799 -4.8092 -2.5375 18 14 8.5924 -5.8240 -1.0584 19 1 8.7471 -7.2926 -0.9011 20 1 9.4416 -5.3549 -2.1827 21 1 9.0101 -5.1454 0.1948 22 6 3.0340 -7.2839 -0.0443 23 6 3.0217 -8.2257 1.1614 24 6 4.1031 -8.3705 0.0878 25 1 -0.3634 0.0701 -1.0252 26 1 -0.3633 -0.9229 0.4520 27 1 -0.3633 0.8529 0.5733 28 1 4.3048 1.4167 0.0073 29 1 4.4595 -1.2662 0.0142 30 1 3.6308 -3.3102 0.2913 31 1 1.5229 -5.1218 0.7928 32 1 1.8155 -5.0736 -0.9623 33 1 4.2677 -5.0198 -1.5936 34 1 7.1695 -4.5682 -3.1759 35 1 2.2630 -7.4260 -0.8016 36 1 3.3213 -7.8135 2.1251 37 1 2.2431 -8.9875 1.1973 38 1 4.0353 -9.2274 -0.5825 39 1 5.1139 -8.0534 0.3446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690145177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 80.944645 kcal Electronic energy + Delta-G solvation = -21560.610552 eV Core-core repulsion = 18313.369074 eV Total energy + Delta-G solvation = -3247.241478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39135 -39.20722 -37.54885 -34.83542 -33.60648 -33.06689 -31.42572 -30.42994 -28.00677 -27.02230 -24.20259 -23.10576 -22.07539 -21.73105 -21.04413 -20.10503 -19.44919 -18.03254 -17.12592 -16.21291 -15.99406 -15.36796 -15.18220 -14.80785 -14.45472 -14.26874 -13.70994 -13.61989 -13.42950 -13.20764 -13.02516 -12.79103 -12.29993 -12.13622 -11.41971 -11.20792 -10.91174 -10.87957 -10.76201 -10.75804 -10.18527 -9.99131 -9.92580 -9.56294 -9.34606 -9.17634 -9.01567 -8.93655 -8.69366 -7.09469 -5.84817 -3.15011 1.39501 2.47624 2.71021 3.37359 3.38384 3.43450 3.44786 3.50006 4.37416 4.56204 4.60056 4.81232 5.14098 5.16401 5.19655 5.33391 5.42477 5.47253 5.53367 5.56950 5.68977 5.72797 5.84343 5.91151 5.96372 6.01120 6.13001 6.33023 6.49741 6.54216 6.58859 6.71779 6.77352 6.78803 6.93570 7.61393 7.74108 8.11973 8.31373 8.36026 9.43978 9.97017 10.33250 11.36655 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.005322 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.515730 B = 5259.855315 C = 6814.282122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.262 5.262 3 N -0.286 5.286 4 C -0.005 4.005 5 C -0.180 4.180 6 C -0.036 4.036 7 C 0.588 3.412 8 O -0.557 6.557 9 N -0.693 5.693 10 C 0.120 3.880 11 C 0.193 3.807 12 H 0.057 0.943 13 N -0.717 5.717 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.007 4.007 17 N -0.928 5.928 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.186 0.814 29 H 0.167 0.833 30 H 0.414 0.586 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 4.650 6.656 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.050 5.050 3 N -0.119 5.119 4 C -0.181 4.181 5 C -0.209 4.209 6 C -0.165 4.165 7 C 0.373 3.627 8 O -0.437 6.437 9 N -0.344 5.344 10 C -0.004 4.004 11 C 0.082 3.918 12 H 0.075 0.925 13 N -0.358 5.358 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.192 4.192 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.203 0.797 29 H 0.184 0.816 30 H 0.252 0.748 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.362 5.332 6.600 13.393 hybrid contribution 1.998 -0.772 -0.293 2.162 sum -8.364 4.560 6.308 11.425 Atomic orbital electron populations 1.22304 0.72848 1.05734 1.04474 1.45551 1.07716 1.01801 1.49961 1.73157 1.04489 1.13773 1.20444 1.23561 0.93318 0.95140 1.06044 1.22444 0.96035 0.95611 1.06791 1.21465 0.91490 0.89741 1.13760 1.16883 0.85650 0.83140 0.76988 1.90732 1.16340 1.84653 1.51954 1.45667 1.12209 1.05731 1.70840 1.21678 0.97533 0.79306 1.01861 1.20060 0.87881 0.88998 0.94874 0.92547 1.42449 1.02057 1.69840 1.21409 1.19098 0.83036 1.32264 1.02744 0.91168 1.24712 0.97814 1.01144 0.96680 1.69644 1.32468 1.45404 1.10000 0.86350 0.85253 0.77995 0.77034 1.21301 1.21755 1.21237 1.23019 1.01598 0.94268 0.99250 1.22966 1.02767 1.03428 0.94246 1.22782 0.96127 0.99689 1.00646 0.89953 0.87087 0.89323 0.79704 0.81591 0.74809 0.91235 0.91497 0.78018 0.93366 0.89113 0.89516 0.90079 0.90215 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.88 59.85 0.65 1.63 16 2 N -0.26 -3.85 3.75 -63.88 -0.24 -4.09 16 3 N -0.29 -4.22 11.90 30.59 0.36 -3.86 16 4 C 0.00 -0.07 12.03 -17.43 -0.21 -0.28 16 5 C -0.18 -2.62 10.50 -38.98 -0.41 -3.03 16 6 C -0.04 -0.57 6.96 -82.06 -0.57 -1.14 16 7 C 0.59 9.78 7.78 -12.64 -0.10 9.68 16 8 O -0.56 -10.05 14.69 5.25 0.08 -9.97 16 9 N -0.69 -11.19 5.37 -61.47 -0.33 -11.52 16 10 C 0.12 1.94 5.22 -4.04 -0.02 1.92 16 11 C 0.19 3.39 2.70 -67.93 -0.18 3.21 16 12 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 13 N -0.72 -15.68 4.54 -53.43 -0.24 -15.92 16 14 C -0.24 -5.91 8.63 -15.06 -0.13 -6.04 16 15 H 0.07 1.69 6.91 -52.48 -0.36 1.32 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 18 Si 0.90 21.01 29.55 -169.99 -5.02 15.98 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.16 -2.66 5.36 -90.63 -0.49 -3.14 16 23 C -0.20 -2.85 10.18 -26.70 -0.27 -3.12 16 24 C -0.16 -2.66 9.78 -26.70 -0.26 -2.92 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.11 1.31 6.22 -51.93 -0.32 0.99 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.17 2.28 7.63 -52.49 -0.40 1.87 16 30 H 0.41 6.76 7.22 -40.82 -0.29 6.47 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.39 9.31 7.80 -40.82 -0.32 8.99 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.09 1.48 8.11 -51.92 -0.42 1.05 16 36 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -29.42 330.92 -7.13 -36.55 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -5.36 Total: 16.70 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.09 Total: -3.50 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.28 Total: -60.74 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.42 -7.13 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690145177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.494 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds