Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28437 * 125.18810 * 2 1 4 4 C 1.30868 * 110.92708 * 179.73719 * 3 2 1 5 5 C 1.39672 * 107.85830 * 0.02562 * 4 3 2 6 6 C 1.36596 * 125.18686 * 179.69884 * 2 1 3 7 7 C 1.47163 * 126.89081 * 0.26232 * 6 2 1 8 8 O 1.21628 * 119.99155 * 5.71357 * 7 6 2 9 9 N 1.34769 * 120.00108 * 185.70614 * 7 6 2 10 10 C 1.46504 * 119.99835 * 185.14221 * 9 7 6 11 11 C 1.52996 * 109.47478 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46866 * 65.00152 * 11 10 9 13 13 N 1.46505 * 109.47039 * 305.00555 * 11 10 9 14 14 C 1.36932 * 120.00215 * 154.99922 * 13 11 10 15 15 H 1.08003 * 120.00030 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99762 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99846 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47144 * 59.99777 * 18 16 14 20 20 H 1.48500 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47007 * 300.00134 * 18 16 14 22 22 C 1.52989 * 109.47660 * 185.00134 * 11 10 9 23 23 C 1.53000 * 117.50281 * 248.75083 * 22 11 10 24 24 C 1.52998 * 117.50544 * 180.08953 * 22 11 10 25 25 H 1.08998 * 109.47425 * 86.09113 * 1 2 3 26 26 H 1.08996 * 109.46850 * 206.09655 * 1 2 3 27 27 H 1.08996 * 109.46791 * 326.09371 * 1 2 3 28 28 H 1.07996 * 126.07089 * 180.02562 * 4 3 2 29 29 H 1.08002 * 127.31487 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00468 * 5.15389 * 9 7 6 31 31 H 1.09004 * 109.47144 * 300.00768 * 10 9 7 32 32 H 1.08997 * 109.46951 * 60.00417 * 10 9 7 33 33 H 0.97002 * 119.99487 * 334.99031 * 13 11 10 34 34 H 0.97006 * 119.99692 * 180.02562 * 17 16 14 35 35 H 1.09008 * 115.55169 * 34.41590 * 22 11 10 36 36 H 1.09005 * 117.49638 * 359.97438 * 23 22 11 37 37 H 1.08991 * 117.50714 * 145.01754 * 23 22 11 38 38 H 1.09003 * 117.50278 * 214.98689 * 24 22 11 39 39 H 1.09004 * 117.49488 * 359.97055 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0056 5 6 3.5611 -0.6667 0.0090 6 6 2.2522 -1.1164 0.0059 7 6 1.7993 -2.5166 0.0078 8 8 0.6153 -2.7728 -0.1008 9 7 2.6965 -3.5148 0.1299 10 6 2.2606 -4.9091 0.0190 11 6 3.4653 -5.8357 0.1948 12 1 3.8560 -5.7354 1.2075 13 7 4.5068 -5.4708 -0.7688 14 6 5.8175 -5.7665 -0.5051 15 1 6.0836 -6.2684 0.4135 16 6 6.8042 -5.4212 -1.4184 17 7 6.4799 -4.8092 -2.5375 18 14 8.5924 -5.8240 -1.0584 19 1 8.7471 -7.2926 -0.9011 20 1 9.4416 -5.3549 -2.1827 21 1 9.0101 -5.1454 0.1948 22 6 3.0340 -7.2839 -0.0443 23 6 3.0217 -8.2257 1.1614 24 6 4.1031 -8.3705 0.0878 25 1 -0.3634 0.0701 -1.0252 26 1 -0.3633 -0.9229 0.4520 27 1 -0.3633 0.8529 0.5733 28 1 4.3048 1.4167 0.0073 29 1 4.4595 -1.2662 0.0142 30 1 3.6308 -3.3102 0.2913 31 1 1.5229 -5.1218 0.7928 32 1 1.8155 -5.0736 -0.9623 33 1 4.2677 -5.0198 -1.5936 34 1 7.1695 -4.5682 -3.1759 35 1 2.2630 -7.4260 -0.8016 36 1 3.3213 -7.8135 2.1251 37 1 2.2431 -8.9875 1.1973 38 1 4.0353 -9.2274 -0.5825 39 1 5.1139 -8.0534 0.3446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690145177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 61.689335 kcal Electronic energy + Delta-G solvation = -21561.445525 eV Core-core repulsion = 18313.369074 eV Total energy + Delta-G solvation = -3248.076451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.49902 -40.53579 -38.95360 -36.18351 -35.24444 -34.20092 -32.92858 -31.84729 -29.55049 -28.01050 -25.80965 -24.64987 -23.32679 -22.99138 -22.20317 -21.43158 -20.74950 -19.43507 -18.77914 -17.34445 -17.26333 -16.81044 -16.57448 -16.08010 -15.97779 -15.63059 -15.15840 -14.96770 -14.68700 -14.60656 -14.35921 -13.74560 -13.66258 -13.24611 -12.93595 -12.87683 -12.64100 -12.40689 -12.23100 -11.99965 -11.89050 -11.69602 -11.26167 -10.96643 -10.85441 -10.74217 -10.37671 -10.03793 -9.95723 -8.96186 -7.84658 -5.12106 0.19883 1.40782 1.53433 1.54484 1.59601 1.61739 2.12904 2.27992 2.61443 3.10726 3.50306 3.59531 3.61261 3.80215 4.02587 4.15464 4.20585 4.30814 4.37282 4.38509 4.42358 4.56282 4.60926 4.68261 4.69697 4.85754 4.88571 4.93478 5.15861 5.19238 5.41488 5.43698 5.51227 5.52582 5.65834 5.72476 6.34538 6.42878 6.98377 7.07621 7.43556 8.13991 8.39462 9.37661 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.005322 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.515730 B = 5259.855315 C = 6814.282122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.266 5.266 3 N -0.295 5.295 4 C -0.005 4.005 5 C -0.184 4.184 6 C -0.057 4.057 7 C 0.589 3.411 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.129 3.871 11 C 0.196 3.804 12 H 0.060 0.940 13 N -0.723 5.723 14 C -0.219 4.219 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.965 5.965 18 Si 0.957 3.043 19 H -0.285 1.285 20 H -0.304 1.304 21 H -0.278 1.278 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.175 4.175 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.217 0.783 29 H 0.170 0.830 30 H 0.413 0.587 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.373 0.627 34 H 0.247 0.753 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 4.522 8.104 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.054 5.054 3 N -0.128 5.128 4 C -0.180 4.180 5 C -0.213 4.213 6 C -0.186 4.186 7 C 0.375 3.625 8 O -0.455 6.455 9 N -0.342 5.342 10 C 0.005 3.995 11 C 0.087 3.913 12 H 0.077 0.923 13 N -0.362 5.362 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.259 4.259 17 N -0.616 5.616 18 Si 0.788 3.212 19 H -0.212 1.212 20 H -0.231 1.231 21 H -0.204 1.204 22 C -0.193 4.193 23 C -0.200 4.200 24 C -0.212 4.212 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.233 0.767 29 H 0.187 0.813 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.205 0.795 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.010 5.180 8.102 14.618 hybrid contribution 2.108 -0.751 -0.676 2.337 sum -8.902 4.428 7.426 12.410 Atomic orbital electron populations 1.22502 0.71357 1.06474 1.05458 1.45860 1.08707 1.01376 1.49500 1.73160 1.05059 1.13900 1.20720 1.24099 0.93788 0.95200 1.04892 1.22608 0.95830 0.96346 1.06542 1.21461 0.92300 0.89611 1.15204 1.17007 0.85378 0.83611 0.76510 1.90715 1.16943 1.85012 1.52853 1.45639 1.12090 1.05776 1.70745 1.21588 0.96987 0.78958 1.01937 1.20164 0.87337 0.90062 0.93713 0.92253 1.42547 1.02256 1.69790 1.21619 1.19391 0.84071 1.29522 1.02052 0.90544 1.25310 1.00941 1.02565 0.97074 1.69789 1.32749 1.47940 1.11115 0.85464 0.81658 0.77620 0.76490 1.21164 1.23107 1.20392 1.22921 1.01797 0.93346 1.01283 1.23035 1.01348 1.02186 0.93388 1.22732 0.95457 1.00188 1.02848 0.89086 0.87826 0.86840 0.76668 0.81275 0.74935 0.89504 0.92423 0.79472 0.94416 0.88672 0.88548 0.87580 0.89722 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 10.88 127.77 1.39 3.13 16 2 N -0.27 -7.53 3.75 -356.02 -1.33 -8.87 16 3 N -0.30 -8.30 11.90 -57.14 -0.68 -8.98 16 4 C 0.00 -0.12 12.03 85.18 1.02 0.90 16 5 C -0.18 -5.22 10.50 22.66 0.24 -4.98 16 6 C -0.06 -1.77 6.96 40.79 0.28 -1.48 16 7 C 0.59 19.33 7.78 86.59 0.67 20.00 16 8 O -0.57 -20.42 14.69 -4.12 -0.06 -20.48 16 9 N -0.69 -21.97 5.37 -466.64 -2.50 -24.48 16 10 C 0.13 4.02 5.22 86.38 0.45 4.47 16 11 C 0.20 6.67 2.70 44.99 0.12 6.80 16 12 H 0.06 2.01 7.84 -2.38 -0.02 1.99 16 13 N -0.72 -31.48 4.54 -322.95 -1.47 -32.94 16 14 C -0.22 -10.66 8.63 84.03 0.73 -9.93 16 15 H 0.08 3.60 6.91 -2.91 -0.02 3.58 16 16 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 17 N -0.97 -55.26 13.06 21.65 0.28 -54.98 16 18 Si 0.96 43.46 29.55 68.60 2.03 45.49 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.17 -5.41 5.36 -10.80 -0.06 -5.47 16 23 C -0.16 -4.19 10.18 30.62 0.31 -3.88 16 24 C -0.17 -5.72 9.78 30.62 0.30 -5.42 16 25 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.10 2.38 6.22 -2.39 -0.01 2.37 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.22 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.17 4.58 7.63 -2.91 -0.02 4.55 16 30 H 0.41 13.37 7.22 -92.71 -0.67 12.71 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.37 18.21 7.80 -92.71 -0.72 17.49 16 34 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 35 H 0.10 2.93 8.11 -2.38 -0.02 2.91 16 36 H 0.10 2.34 8.05 -2.38 -0.02 2.32 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.08 3.04 6.23 -2.38 -0.01 3.03 16 Total: -1.00 -62.22 330.92 1.88 -60.34 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -0.31 Total: 43.79 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.93 Total: 1.10 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.70 Total: -130.24 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.22 1.88 -60.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690145177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.027 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds