Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34258 * 125.75178 * 2 1 4 4 C 1.38042 * 107.41914 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41775 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99743 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 H 1.08992 * 109.46993 * 295.00086 * 9 8 7 11 11 N 1.46506 * 109.46943 * 54.99919 * 9 8 7 12 12 C 1.36929 * 119.99909 * 205.00011 * 11 9 8 13 13 H 1.08006 * 120.00094 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00176 * 180.02562 * 12 11 9 15 15 N 1.31615 * 119.99668 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47298 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47346 * 120.00091 * 16 14 12 19 19 H 1.48503 * 109.46960 * 239.99923 * 16 14 12 20 20 C 1.52995 * 109.47195 * 174.99817 * 9 8 7 21 21 C 1.52999 * 117.50225 * 248.74775 * 20 9 8 22 22 C 1.52999 * 117.49761 * 180.08552 * 20 9 8 23 23 C 1.41291 * 107.16396 * 0.23821 * 4 3 2 24 24 N 1.30442 * 108.02749 * 359.59410 * 23 4 3 25 25 H 1.08998 * 109.46812 * 90.00152 * 1 2 3 26 26 H 1.08996 * 109.46938 * 210.00217 * 1 2 3 27 27 H 1.08997 * 109.47409 * 330.00651 * 1 2 3 28 28 H 1.07999 * 126.29325 * 359.97344 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 0.97002 * 119.99781 * 25.00223 * 11 9 8 33 33 H 0.96996 * 119.99816 * 180.02562 * 15 14 12 34 34 H 1.09006 * 115.55266 * 34.42181 * 20 9 8 35 35 H 1.08993 * 117.49781 * 359.97438 * 21 20 9 36 36 H 1.09000 * 117.50138 * 145.02405 * 21 20 9 37 37 H 1.09009 * 117.50018 * 214.98040 * 22 20 9 38 38 H 1.08997 * 117.49907 * 0.02562 * 22 20 9 39 39 H 1.08008 * 125.98679 * 179.74239 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6554 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6525 2.7172 -0.0019 7 7 5.9877 0.9419 -0.0013 8 6 7.1841 1.7874 -0.0082 9 6 8.4331 0.9037 -0.0137 10 1 8.4836 0.3403 0.9179 11 7 8.3685 -0.0261 -1.1440 12 6 9.0500 -1.2127 -1.0942 13 1 9.6348 -1.4634 -0.2215 14 6 8.9891 -2.0936 -2.1653 15 7 8.2768 -1.7879 -3.2290 16 14 9.9183 -3.7127 -2.0971 17 1 10.6379 -3.8163 -0.8022 18 1 8.9592 -4.8395 -2.2224 19 1 10.8969 -3.7692 -3.2126 20 6 9.6787 1.7821 -0.1466 21 6 10.4682 1.6954 -1.4543 22 6 11.0382 1.0807 -0.1735 23 6 3.5311 -0.7572 -0.0066 24 7 2.2827 -1.1355 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9166 2.1170 -0.0004 29 1 6.0765 -0.0240 -0.0012 30 1 7.1798 2.4159 -0.8988 31 1 7.1888 2.4176 0.8812 32 1 7.8429 0.1989 -1.9276 33 1 8.2340 -2.4036 -3.9773 34 1 9.6234 2.7538 0.3444 35 1 10.1005 1.0122 -2.2198 36 1 10.9326 2.6098 -1.8235 37 1 11.8774 1.5911 0.2994 38 1 11.0452 -0.0066 -0.0969 39 1 4.3919 -1.4095 -0.0124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713103968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 81.150317 kcal Electronic energy + Delta-G solvation = -21390.391626 eV Core-core repulsion = 18143.159066 eV Total energy + Delta-G solvation = -3247.232560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26330 -38.87532 -37.47778 -34.38304 -33.49670 -33.13740 -30.90200 -30.19388 -28.30110 -26.89817 -23.88651 -23.06465 -21.88756 -21.41095 -20.86793 -19.83023 -19.02148 -17.85062 -17.12572 -15.76593 -15.68588 -15.48930 -15.07775 -14.64498 -14.49650 -14.34357 -13.80044 -13.49928 -13.12100 -12.93398 -12.80502 -12.71808 -12.62170 -11.95944 -11.23581 -11.16726 -10.98924 -10.87158 -10.82167 -10.48830 -10.07073 -9.68487 -9.58289 -9.57359 -9.39596 -9.12870 -8.96366 -8.75320 -8.38741 -7.04388 -5.81734 -3.11681 1.60585 2.31140 2.33465 3.40118 3.46841 3.48794 3.72446 3.82223 4.41113 4.52007 4.66991 4.75048 4.89046 5.01009 5.14900 5.31248 5.42677 5.49182 5.50003 5.62814 5.76403 5.84113 5.89639 6.03786 6.10871 6.15466 6.41291 6.48080 6.52414 6.69053 6.77987 6.81015 6.98265 7.06307 7.30870 7.55805 7.68248 8.09301 8.35396 8.72369 9.47941 10.02241 10.38571 11.39712 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004942 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.323561 B = 5663.792471 C = 7089.411496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.120 3.880 4 C -0.286 4.286 5 C 0.591 3.409 6 O -0.567 6.567 7 N -0.708 5.708 8 C 0.121 3.879 9 C 0.191 3.809 10 H 0.057 0.943 11 N -0.717 5.717 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.927 5.927 16 Si 0.901 3.099 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.293 1.293 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.176 4.176 23 C 0.090 3.910 24 N -0.301 5.301 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.186 0.814 29 H 0.409 0.591 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.387 0.613 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 5.421 7.416 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.031 4.031 4 C -0.300 4.300 5 C 0.379 3.621 6 O -0.447 6.447 7 N -0.358 5.358 8 C -0.003 4.003 9 C 0.081 3.919 10 H 0.075 0.925 11 N -0.359 5.359 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.575 5.575 16 Si 0.732 3.268 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.220 1.220 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.213 4.213 23 C -0.098 4.098 24 N -0.121 5.121 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.203 0.797 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.869 5.090 7.461 14.915 hybrid contribution 1.046 -0.572 -0.417 1.263 sum -10.823 4.518 7.044 13.681 Atomic orbital electron populations 1.21930 0.73848 1.04694 1.03737 1.48407 1.07071 1.04023 1.55447 1.22907 0.90211 0.93544 0.96436 1.20353 0.93590 0.93647 1.22447 1.17196 0.82431 0.86714 0.75799 1.90719 1.87185 1.14273 1.52571 1.45732 1.04796 1.11360 1.73931 1.21556 0.84029 0.93237 1.01478 1.20002 0.89374 0.89640 0.92924 0.92487 1.42485 1.58623 1.17910 1.16887 1.19212 1.22831 0.93998 1.00950 0.91006 1.24699 1.00459 0.98673 0.96575 1.69667 1.44192 1.36942 1.06693 0.86218 0.79181 0.84151 0.77221 1.20594 1.21959 1.21987 1.23069 0.94278 0.99873 1.02633 1.22912 1.02960 1.01682 0.92475 1.22852 0.95062 1.00998 1.02389 1.24236 0.95317 0.94174 0.96089 1.77196 1.02072 1.07529 1.25337 0.90388 0.89023 0.89244 0.79696 0.75474 0.91709 0.91878 0.77887 0.93526 0.89629 0.86339 0.91335 0.91077 0.87942 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.44 59.85 0.68 1.34 16 2 N -0.37 -4.39 3.98 -67.60 -0.27 -4.66 16 3 C 0.12 1.51 11.30 -16.56 -0.19 1.33 16 4 C -0.29 -4.35 6.13 -105.07 -0.64 -4.99 16 5 C 0.59 10.30 7.81 -12.52 -0.10 10.20 16 6 O -0.57 -11.25 16.90 5.27 0.09 -11.16 16 7 N -0.71 -11.98 5.38 -61.38 -0.33 -12.31 16 8 C 0.12 2.08 5.22 -4.04 -0.02 2.06 16 9 C 0.19 3.50 2.86 -67.93 -0.19 3.31 16 10 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 11 N -0.72 -15.82 3.08 -53.42 -0.16 -15.98 16 12 C -0.24 -5.90 8.15 -15.06 -0.12 -6.02 16 13 H 0.07 1.76 6.91 -52.48 -0.36 1.40 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16 16 Si 0.90 21.30 29.55 -169.99 -5.02 16.28 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 C -0.18 -3.08 5.70 -90.62 -0.52 -3.59 16 21 C -0.16 -3.06 9.74 -26.69 -0.26 -3.32 16 22 C -0.18 -3.13 9.87 -26.69 -0.26 -3.40 16 23 C 0.09 1.33 11.50 -16.98 -0.20 1.13 16 24 N -0.30 -4.43 12.50 30.86 0.39 -4.05 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.41 6.89 7.09 -40.82 -0.29 6.60 16 30 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.39 9.44 7.80 -40.82 -0.32 9.12 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.10 2.04 6.22 -51.93 -0.32 1.71 16 39 H 0.19 2.62 7.50 -52.48 -0.39 2.22 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -31.18 332.75 -6.88 -38.06 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -5.39 Total: 16.53 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.91 Total: -2.25 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.35 Total: -62.47 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -6.88 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713103968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.210 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds