Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34258 * 125.75178 * 2 1 4 4 C 1.38042 * 107.41914 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.41775 * 179.97438 * 4 3 2 6 6 O 1.21603 * 120.00000 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99743 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 H 1.08992 * 109.46993 * 295.00086 * 9 8 7 11 11 N 1.46506 * 109.46943 * 54.99919 * 9 8 7 12 12 C 1.36929 * 119.99909 * 205.00011 * 11 9 8 13 13 H 1.08006 * 120.00094 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00176 * 180.02562 * 12 11 9 15 15 N 1.31615 * 119.99668 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47298 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47346 * 120.00091 * 16 14 12 19 19 H 1.48503 * 109.46960 * 239.99923 * 16 14 12 20 20 C 1.52995 * 109.47195 * 174.99817 * 9 8 7 21 21 C 1.52999 * 117.50225 * 248.74775 * 20 9 8 22 22 C 1.52999 * 117.49761 * 180.08552 * 20 9 8 23 23 C 1.41291 * 107.16396 * 0.23821 * 4 3 2 24 24 N 1.30442 * 108.02749 * 359.59410 * 23 4 3 25 25 H 1.08998 * 109.46812 * 90.00152 * 1 2 3 26 26 H 1.08996 * 109.46938 * 210.00217 * 1 2 3 27 27 H 1.08997 * 109.47409 * 330.00651 * 1 2 3 28 28 H 1.07999 * 126.29325 * 359.97344 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 0.97002 * 119.99781 * 25.00223 * 11 9 8 33 33 H 0.96996 * 119.99816 * 180.02562 * 15 14 12 34 34 H 1.09006 * 115.55266 * 34.42181 * 20 9 8 35 35 H 1.08993 * 117.49781 * 359.97438 * 21 20 9 36 36 H 1.09000 * 117.50138 * 145.02405 * 21 20 9 37 37 H 1.09009 * 117.50018 * 214.98040 * 22 20 9 38 38 H 1.08997 * 117.49907 * 0.02562 * 22 20 9 39 39 H 1.08008 * 125.98679 * 179.74239 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6554 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6525 2.7172 -0.0019 7 7 5.9877 0.9419 -0.0013 8 6 7.1841 1.7874 -0.0082 9 6 8.4331 0.9037 -0.0137 10 1 8.4836 0.3403 0.9179 11 7 8.3685 -0.0261 -1.1440 12 6 9.0500 -1.2127 -1.0942 13 1 9.6348 -1.4634 -0.2215 14 6 8.9891 -2.0936 -2.1653 15 7 8.2768 -1.7879 -3.2290 16 14 9.9183 -3.7127 -2.0971 17 1 10.6379 -3.8163 -0.8022 18 1 8.9592 -4.8395 -2.2224 19 1 10.8969 -3.7692 -3.2126 20 6 9.6787 1.7821 -0.1466 21 6 10.4682 1.6954 -1.4543 22 6 11.0382 1.0807 -0.1735 23 6 3.5311 -0.7572 -0.0066 24 7 2.2827 -1.1355 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9166 2.1170 -0.0004 29 1 6.0765 -0.0240 -0.0012 30 1 7.1798 2.4159 -0.8988 31 1 7.1888 2.4176 0.8812 32 1 7.8429 0.1989 -1.9276 33 1 8.2340 -2.4036 -3.9773 34 1 9.6234 2.7538 0.3444 35 1 10.1005 1.0122 -2.2198 36 1 10.9326 2.6098 -1.8235 37 1 11.8774 1.5911 0.2994 38 1 11.0452 -0.0066 -0.0969 39 1 4.3919 -1.4095 -0.0124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713103968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 60.142519 kcal Electronic energy + Delta-G solvation = -21391.302593 eV Core-core repulsion = 18143.159066 eV Total energy + Delta-G solvation = -3248.143526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.30941 -40.25565 -38.98960 -35.82578 -35.02308 -34.32326 -32.55770 -31.37815 -29.80179 -27.84078 -25.60312 -24.55121 -23.22015 -22.80796 -21.86795 -21.15893 -20.44259 -19.30289 -18.73999 -16.98316 -16.90031 -16.68621 -16.46164 -16.26496 -15.83848 -15.53342 -15.25905 -15.15548 -14.50996 -14.29550 -13.86715 -13.70066 -13.44019 -13.41724 -12.90002 -12.84834 -12.61809 -12.52895 -12.11912 -12.03525 -11.89077 -11.55443 -11.01061 -10.98716 -10.74534 -10.56949 -10.56582 -10.03827 -9.57895 -8.95049 -7.84953 -5.11959 0.57084 1.15027 1.48804 1.50132 1.53120 1.59905 2.42731 2.54522 2.61533 3.18249 3.49779 3.56010 3.84045 3.93761 4.04485 4.16565 4.19018 4.32525 4.38659 4.44010 4.56230 4.59129 4.62855 4.70157 4.70996 4.81202 5.00540 5.00800 5.23349 5.31634 5.37928 5.47509 5.64789 5.70954 5.72864 5.91418 6.35228 6.49754 6.73775 7.36665 7.43889 8.15272 8.40635 9.37687 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004942 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.323561 B = 5663.792471 C = 7089.411496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.361 5.361 3 C 0.136 3.864 4 C -0.317 4.317 5 C 0.592 3.408 6 O -0.595 6.595 7 N -0.708 5.708 8 C 0.130 3.870 9 C 0.192 3.808 10 H 0.061 0.939 11 N -0.720 5.720 12 C -0.214 4.214 13 H 0.077 0.923 14 C -0.065 4.065 15 N -0.964 5.964 16 Si 0.954 3.046 17 H -0.267 1.267 18 H -0.300 1.300 19 H -0.304 1.304 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.170 4.170 23 C 0.082 3.918 24 N -0.326 5.326 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.215 0.785 29 H 0.408 0.592 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.374 0.626 33 H 0.246 0.754 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 6.468 9.034 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.140 5.140 3 C -0.018 4.018 4 C -0.332 4.332 5 C 0.381 3.619 6 O -0.478 6.478 7 N -0.358 5.358 8 C 0.006 3.994 9 C 0.083 3.917 10 H 0.079 0.921 11 N -0.360 5.360 12 C -0.346 4.346 13 H 0.095 0.905 14 C -0.258 4.258 15 N -0.616 5.616 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.228 1.228 19 H -0.232 1.232 20 C -0.188 4.188 21 C -0.211 4.211 22 C -0.207 4.207 23 C -0.105 4.105 24 N -0.147 5.147 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.232 0.768 29 H 0.245 0.755 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.206 0.794 33 H 0.055 0.945 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.536 6.127 9.134 16.677 hybrid contribution 1.162 -0.829 -0.860 1.666 sum -11.374 5.298 8.274 15.030 Atomic orbital electron populations 1.22417 0.70735 1.06778 1.05330 1.48823 1.08690 1.03005 1.53447 1.23330 0.89396 0.94816 0.94220 1.20310 0.93921 0.93607 1.25349 1.17472 0.82940 0.86566 0.74951 1.90689 1.87575 1.15375 1.54179 1.45730 1.04917 1.11261 1.73861 1.21457 0.83484 0.92892 1.01606 1.20139 0.90655 0.89438 0.91468 0.92095 1.42536 1.58013 1.17969 1.17447 1.19461 1.20879 0.94137 1.00156 0.90512 1.25269 1.02208 1.01463 0.96866 1.69804 1.46619 1.37739 1.07391 0.85349 0.77787 0.81141 0.77153 1.19158 1.22760 1.23191 1.23057 0.93284 1.00790 1.01716 1.22771 1.04290 1.01988 0.92083 1.22843 0.96321 0.99875 1.01668 1.24274 0.95667 0.94232 0.96317 1.77132 1.02264 1.09191 1.26098 0.88986 0.88362 0.85848 0.76829 0.75539 0.93067 0.90108 0.79371 0.94524 0.86613 0.90474 0.89167 0.88078 0.90322 0.78921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.44 127.77 1.46 2.35 16 2 N -0.36 -7.85 3.98 -367.78 -1.46 -9.32 16 3 C 0.14 3.16 11.30 84.28 0.95 4.11 16 4 C -0.32 -9.49 6.13 -20.15 -0.12 -9.62 16 5 C 0.59 20.46 7.81 86.66 0.68 21.13 16 6 O -0.60 -23.27 16.90 -4.04 -0.07 -23.34 16 7 N -0.71 -23.92 5.38 -466.36 -2.51 -26.42 16 8 C 0.13 4.33 5.22 86.38 0.45 4.78 16 9 C 0.19 6.83 2.86 44.99 0.13 6.96 16 10 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 11 N -0.72 -31.97 3.08 -322.94 -0.99 -32.97 16 12 C -0.21 -10.62 8.15 84.04 0.69 -9.94 16 13 H 0.08 3.71 6.91 -2.91 -0.02 3.69 16 14 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 15 N -0.96 -56.14 13.06 21.65 0.28 -55.86 16 16 Si 0.95 44.50 29.55 68.60 2.03 46.53 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 C -0.17 -5.46 5.70 -10.80 -0.06 -5.52 16 21 C -0.17 -6.33 9.74 30.62 0.30 -6.03 16 22 C -0.17 -5.70 9.87 30.62 0.30 -5.40 16 23 C 0.08 2.44 11.50 85.65 0.99 3.43 16 24 N -0.33 -9.37 12.50 -56.27 -0.70 -10.07 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 27 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.41 13.92 7.09 -92.71 -0.66 13.27 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.37 18.72 7.80 -92.71 -0.72 17.99 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.12 3.16 8.11 -2.38 -0.02 3.14 16 35 H 0.08 3.51 6.68 -2.39 -0.02 3.50 16 36 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 38 H 0.08 3.03 6.22 -2.39 -0.01 3.01 16 39 H 0.19 5.43 7.50 -2.91 -0.02 5.41 16 Total: -1.00 -68.01 332.75 2.49 -65.51 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.30 Total: 42.73 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.22 Total: 3.21 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -5.39 Total: -134.64 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.01 2.49 -65.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713103968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.656 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds