Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35848 * 126.13663 * 2 1 4 4 N 1.30169 * 108.99970 * 179.97438 * 3 2 1 5 5 C 1.35760 * 108.87189 * 359.97438 * 4 3 2 6 6 C 1.47325 * 126.23724 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99765 * 173.69356 * 6 5 4 8 8 N 1.34780 * 119.99770 * 353.69455 * 6 5 4 9 9 C 1.46925 * 120.63315 * 353.67034 * 8 6 5 10 10 C 1.53191 * 108.77960 * 126.41156 * 9 8 6 11 11 C 1.53036 * 109.31059 * 54.63344 * 10 9 8 12 12 C 1.53044 * 109.53649 * 298.63464 * 11 10 9 13 13 H 1.08997 * 109.50141 * 301.38029 * 12 11 10 14 14 N 1.46508 * 109.49516 * 181.32295 * 12 11 10 15 15 C 1.36936 * 119.99884 * 155.00338 * 14 12 11 16 16 H 1.07994 * 120.00113 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99531 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00454 * 359.72533 * 17 15 14 19 19 Si 1.86800 * 119.99632 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47024 * 60.00265 * 19 17 15 21 21 H 1.48505 * 109.46866 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47427 * 300.00145 * 19 17 15 23 23 C 1.46921 * 120.62833 * 173.68384 * 8 6 5 24 24 C 1.35383 * 126.13354 * 180.26613 * 2 1 3 25 25 H 1.09004 * 109.46868 * 90.02652 * 1 2 3 26 26 H 1.08994 * 109.47472 * 210.02647 * 1 2 3 27 27 H 1.09000 * 109.47258 * 330.03119 * 1 2 3 28 28 H 1.08001 * 125.49673 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.58489 * 6.61936 * 9 8 6 30 30 H 1.09002 * 109.69918 * 246.27112 * 9 8 6 31 31 H 1.09005 * 109.49341 * 294.67990 * 10 9 8 32 32 H 1.08998 * 109.49843 * 174.58718 * 10 9 8 33 33 H 1.09004 * 109.45754 * 178.62019 * 11 10 9 34 34 H 1.08993 * 109.45179 * 58.65273 * 11 10 9 35 35 H 0.96999 * 119.99739 * 334.99529 * 14 12 11 36 36 H 0.96995 * 120.00666 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.58549 * 113.79867 * 23 8 6 38 38 H 1.08999 * 109.58861 * 353.38033 * 23 8 6 39 39 H 1.07997 * 126.56482 * 0.05736 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0006 5 6 3.5511 -0.6434 0.0015 6 6 4.7652 -1.4779 0.0029 7 8 4.6732 -2.6850 0.1193 8 7 5.9778 -0.9036 -0.1249 9 6 6.0997 0.5337 -0.4045 10 6 7.0143 1.1653 0.6497 11 6 8.3478 0.4151 0.6777 12 6 8.1050 -1.0462 1.0620 13 1 7.6208 -1.0902 2.0375 14 7 9.3854 -1.7560 1.1194 15 6 9.5151 -2.8720 1.9021 16 1 8.6737 -3.2288 2.4775 17 6 10.7282 -3.5448 1.9560 18 7 11.7520 -3.1131 1.2506 19 14 10.9053 -5.0669 3.0243 20 1 9.9405 -6.1023 2.5745 21 1 12.2882 -5.5954 2.9074 22 1 10.6280 -4.7133 4.4397 23 6 7.2029 -1.7029 0.0125 24 6 2.2633 -1.0934 -0.0051 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5133 28 1 1.9258 2.1221 -0.0004 29 1 5.1151 0.9993 -0.3604 30 1 6.5290 0.6800 -1.3957 31 1 6.5397 1.1006 1.6288 32 1 7.1904 2.2113 0.3988 33 1 9.0095 0.8780 1.4099 34 1 8.8099 0.4593 -0.3085 35 1 10.1412 -1.4353 0.6028 36 1 12.5995 -3.5834 1.2879 37 1 7.7234 -1.7412 -0.9444 38 1 6.9462 -2.7130 0.3318 39 1 1.9421 -2.1245 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998915808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 54.681111 kcal Electronic energy + Delta-G solvation = -21696.660704 eV Core-core repulsion = 18448.280353 eV Total energy + Delta-G solvation = -3248.380351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39686 -39.36217 -37.00727 -34.69190 -34.02139 -32.03265 -30.96894 -29.98764 -28.43429 -27.31830 -25.18836 -23.82222 -22.49153 -21.70113 -21.38969 -20.00352 -18.91254 -17.35472 -16.96266 -16.32149 -16.10026 -15.45151 -14.93772 -14.42923 -14.38618 -14.11879 -13.83676 -13.57405 -13.40561 -13.21953 -13.17814 -13.08968 -12.44291 -12.17843 -12.03982 -11.31128 -10.94669 -10.74244 -10.69758 -10.39369 -10.14522 -10.05552 -9.84121 -9.68294 -9.63101 -9.16738 -8.93510 -8.80930 -8.06206 -6.88617 -5.69471 -2.98471 1.53471 2.28829 2.36018 3.48318 3.53200 3.55329 3.58026 3.73107 4.24911 4.26901 4.53504 4.62291 4.67501 4.89160 4.98749 5.28773 5.38597 5.47895 5.58905 5.64703 5.77110 5.86634 5.93476 6.02094 6.13867 6.32657 6.38589 6.41725 6.52049 6.58863 6.69411 6.83648 6.99795 7.05731 7.27594 7.59862 7.80224 7.97085 8.48836 8.62187 9.60503 10.16233 10.52018 11.53030 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.004005 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.548161 B = 6989.360790 C = 7697.644599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C 0.182 3.818 4 N -0.458 5.458 5 C -0.047 4.047 6 C 0.593 3.407 7 O -0.550 6.550 8 N -0.588 5.588 9 C 0.065 3.935 10 C -0.122 4.122 11 C -0.127 4.127 12 C 0.169 3.831 13 H 0.049 0.951 14 N -0.719 5.719 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.093 3.907 24 C 0.028 3.972 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.211 0.789 29 H 0.149 0.851 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.148 12.343 -4.485 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.101 4.101 4 N -0.177 5.177 5 C -0.176 4.176 6 C 0.380 3.620 7 O -0.429 6.429 8 N -0.319 5.319 9 C -0.058 4.058 10 C -0.161 4.161 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.067 0.933 14 N -0.359 5.359 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.032 4.032 24 C -0.110 4.110 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.227 0.773 29 H 0.165 0.835 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.606 12.055 -4.295 26.852 hybrid contribution -0.224 -1.174 0.332 1.241 sum -23.830 10.880 -3.963 26.495 Atomic orbital electron populations 1.22134 0.75939 1.05117 1.03960 1.45300 1.08126 1.06936 1.54101 1.25363 0.85519 0.93598 1.05581 1.70097 1.18093 1.10563 1.18957 1.20752 0.93456 0.90158 1.13197 1.16989 0.81942 0.86154 0.76914 1.90785 1.86347 1.13735 1.52010 1.48029 1.05425 1.10050 1.68441 1.22870 1.05572 0.80278 0.97079 1.21783 0.95983 0.98724 0.99622 1.21850 0.96617 0.96498 1.01590 1.20486 0.87922 0.89882 0.95883 0.93260 1.42386 1.07678 1.31135 1.54733 1.19251 0.96273 1.02333 1.19227 0.91123 1.24733 0.96033 0.99553 1.00493 1.69651 1.02076 1.41935 1.44578 0.86264 0.76625 0.83142 0.80183 1.21148 1.21735 1.21265 1.22760 0.83302 0.96619 1.00514 1.22601 0.90144 0.93174 1.05090 0.90158 0.89285 0.89067 0.77254 0.83459 0.93020 0.91997 0.91548 0.91803 0.92305 0.78113 0.93496 0.92191 0.89375 0.79503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.15 59.85 0.67 0.85 16 2 N -0.46 -3.50 3.13 -125.78 -0.39 -3.89 16 3 C 0.18 1.50 12.55 -89.91 -1.13 0.38 16 4 N -0.46 -5.70 7.68 -11.03 -0.08 -5.79 16 5 C -0.05 -0.69 6.71 -83.09 -0.56 -1.24 16 6 C 0.59 11.07 7.68 -12.56 -0.10 10.98 16 7 O -0.55 -11.95 16.33 5.26 0.09 -11.86 16 8 N -0.59 -10.84 2.97 -174.08 -0.52 -11.36 16 9 C 0.06 0.99 6.32 -3.71 -0.02 0.97 16 10 C -0.12 -1.83 6.08 -26.61 -0.16 -1.99 16 11 C -0.13 -2.28 5.35 -26.69 -0.14 -2.43 16 12 C 0.17 3.70 2.92 -67.81 -0.20 3.50 16 13 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 14 N -0.72 -18.96 5.12 -53.31 -0.27 -19.23 16 15 C -0.24 -6.99 9.93 -15.06 -0.15 -7.14 16 16 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 19 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.09 1.97 6.00 -3.72 -0.02 1.94 16 24 C 0.03 0.31 11.27 -16.64 -0.19 0.12 16 25 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 26 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 29 H 0.15 2.10 3.66 -77.82 -0.29 1.82 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.39 10.61 7.80 -40.82 -0.32 10.29 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 2.12 7.05 -51.93 -0.37 1.75 16 39 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -36.32 322.75 -8.30 -44.62 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.59 Total: 7.10 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.10 Total: 5.48 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.54 Total: -68.52 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.32 -8.30 -44.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998915808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.302 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds