Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35848 * 126.13663 * 2 1 4 4 N 1.30169 * 108.99970 * 179.97438 * 3 2 1 5 5 C 1.35760 * 108.87189 * 359.97438 * 4 3 2 6 6 C 1.47325 * 126.23724 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99765 * 173.69356 * 6 5 4 8 8 N 1.34780 * 119.99770 * 353.69455 * 6 5 4 9 9 C 1.46925 * 120.63315 * 353.67034 * 8 6 5 10 10 C 1.53191 * 108.77960 * 126.41156 * 9 8 6 11 11 C 1.53036 * 109.31059 * 54.63344 * 10 9 8 12 12 C 1.53044 * 109.53649 * 298.63464 * 11 10 9 13 13 H 1.08997 * 109.50141 * 301.38029 * 12 11 10 14 14 N 1.46508 * 109.49516 * 181.32295 * 12 11 10 15 15 C 1.36936 * 119.99884 * 155.00338 * 14 12 11 16 16 H 1.07994 * 120.00113 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99531 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00454 * 359.72533 * 17 15 14 19 19 Si 1.86800 * 119.99632 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47024 * 60.00265 * 19 17 15 21 21 H 1.48505 * 109.46866 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47427 * 300.00145 * 19 17 15 23 23 C 1.46921 * 120.62833 * 173.68384 * 8 6 5 24 24 C 1.35383 * 126.13354 * 180.26613 * 2 1 3 25 25 H 1.09004 * 109.46868 * 90.02652 * 1 2 3 26 26 H 1.08994 * 109.47472 * 210.02647 * 1 2 3 27 27 H 1.09000 * 109.47258 * 330.03119 * 1 2 3 28 28 H 1.08001 * 125.49673 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.58489 * 6.61936 * 9 8 6 30 30 H 1.09002 * 109.69918 * 246.27112 * 9 8 6 31 31 H 1.09005 * 109.49341 * 294.67990 * 10 9 8 32 32 H 1.08998 * 109.49843 * 174.58718 * 10 9 8 33 33 H 1.09004 * 109.45754 * 178.62019 * 11 10 9 34 34 H 1.08993 * 109.45179 * 58.65273 * 11 10 9 35 35 H 0.96999 * 119.99739 * 334.99529 * 14 12 11 36 36 H 0.96995 * 120.00666 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.58549 * 113.79867 * 23 8 6 38 38 H 1.08999 * 109.58861 * 353.38033 * 23 8 6 39 39 H 1.07997 * 126.56482 * 0.05736 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0006 5 6 3.5511 -0.6434 0.0015 6 6 4.7652 -1.4779 0.0029 7 8 4.6732 -2.6850 0.1193 8 7 5.9778 -0.9036 -0.1249 9 6 6.0997 0.5337 -0.4045 10 6 7.0143 1.1653 0.6497 11 6 8.3478 0.4151 0.6777 12 6 8.1050 -1.0462 1.0620 13 1 7.6208 -1.0902 2.0375 14 7 9.3854 -1.7560 1.1194 15 6 9.5151 -2.8720 1.9021 16 1 8.6737 -3.2288 2.4775 17 6 10.7282 -3.5448 1.9560 18 7 11.7520 -3.1131 1.2506 19 14 10.9053 -5.0669 3.0243 20 1 9.9405 -6.1023 2.5745 21 1 12.2882 -5.5954 2.9074 22 1 10.6280 -4.7133 4.4397 23 6 7.2029 -1.7029 0.0125 24 6 2.2633 -1.0934 -0.0051 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5133 28 1 1.9258 2.1221 -0.0004 29 1 5.1151 0.9993 -0.3604 30 1 6.5290 0.6800 -1.3957 31 1 6.5397 1.1006 1.6288 32 1 7.1904 2.2113 0.3988 33 1 9.0095 0.8780 1.4099 34 1 8.8099 0.4593 -0.3085 35 1 10.1412 -1.4353 0.6028 36 1 12.5995 -3.5834 1.2879 37 1 7.7234 -1.7412 -0.9444 38 1 6.9462 -2.7130 0.3318 39 1 1.9421 -2.1245 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998915808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 30.186229 kcal Electronic energy + Delta-G solvation = -21697.722882 eV Core-core repulsion = 18448.280353 eV Total energy + Delta-G solvation = -3249.442528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.18406 -40.80218 -38.59225 -36.23793 -35.08093 -33.76393 -32.70176 -30.91813 -30.04724 -28.09328 -26.50993 -25.84049 -23.63620 -23.23343 -22.16236 -21.44425 -20.19830 -19.13850 -18.35035 -17.54724 -16.84671 -16.72719 -16.60137 -15.98072 -15.56286 -15.49597 -15.13317 -15.07453 -14.81488 -14.57777 -14.03901 -13.94033 -13.64329 -13.52332 -13.38358 -13.06104 -12.87426 -12.49611 -12.27950 -12.18606 -11.87939 -11.79468 -11.34833 -11.29644 -11.07760 -10.71796 -10.27752 -9.82775 -9.52452 -9.00687 -7.98501 -5.28471 0.57022 1.43469 1.45669 1.47759 1.53695 1.75418 2.17540 2.50552 2.54284 3.34033 3.37339 3.78464 3.85962 3.99252 4.03579 4.11896 4.21092 4.31829 4.38612 4.46456 4.50455 4.53940 4.71910 4.78726 4.81290 4.89223 5.01918 5.09528 5.10575 5.14885 5.36309 5.41275 5.49131 5.52061 5.79729 6.22136 6.25349 6.52115 6.85202 7.22875 7.29841 8.01187 8.28372 9.24196 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.004005 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.548161 B = 6989.360790 C = 7697.644599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.453 5.453 3 C 0.205 3.795 4 N -0.490 5.490 5 C -0.090 4.090 6 C 0.584 3.416 7 O -0.598 6.598 8 N -0.593 5.593 9 C 0.063 3.937 10 C -0.111 4.111 11 C -0.118 4.118 12 C 0.170 3.830 13 H 0.030 0.970 14 N -0.729 5.729 15 C -0.249 4.249 16 H 0.065 0.935 17 C -0.068 4.068 18 N -0.965 5.965 19 Si 0.972 3.028 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.107 3.893 24 C 0.040 3.960 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.260 0.740 29 H 0.169 0.831 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.377 0.623 36 H 0.254 0.746 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.030 14.584 -4.458 31.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.133 5.133 3 C -0.079 4.079 4 N -0.209 5.209 5 C -0.217 4.217 6 C 0.374 3.626 7 O -0.480 6.480 8 N -0.323 5.323 9 C -0.059 4.059 10 C -0.150 4.150 11 C -0.157 4.157 12 C 0.060 3.940 13 H 0.048 0.952 14 N -0.369 5.369 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.261 4.261 18 N -0.615 5.615 19 Si 0.800 3.200 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.019 4.019 24 C -0.101 4.101 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.276 0.724 29 H 0.185 0.815 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.210 0.790 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -26.557 14.349 -4.270 30.486 hybrid contribution 0.469 -1.791 0.297 1.875 sum -26.088 12.559 -3.973 29.225 Atomic orbital electron populations 1.22551 0.72524 1.07018 1.05623 1.45578 1.09947 1.05530 1.52225 1.26244 0.84251 0.95348 1.02036 1.69785 1.20845 1.09248 1.21019 1.20218 0.92602 0.91210 1.17657 1.17670 0.83126 0.86195 0.75629 1.90734 1.87172 1.15913 1.54141 1.48091 1.04460 1.11141 1.68613 1.23176 1.07031 0.78233 0.97429 1.21748 0.93665 1.00201 0.99355 1.21766 0.98651 0.93682 1.01558 1.20598 0.86053 0.92199 0.95111 0.95195 1.42505 1.09040 1.30934 1.54416 1.19514 0.96182 1.03192 1.19220 0.91696 1.25530 0.95766 1.02616 1.02175 1.69792 1.02360 1.43245 1.46094 0.85245 0.76490 0.79463 0.78777 1.20890 1.21377 1.20234 1.22237 0.84770 0.95246 0.99647 1.22696 0.89626 0.94542 1.03236 0.88555 0.88555 0.86154 0.72419 0.81543 0.92294 0.92594 0.87775 0.91965 0.91837 0.79022 0.93744 0.92783 0.93196 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 11.15 127.77 1.42 1.47 16 2 N -0.45 -5.19 3.13 -551.86 -1.73 -6.92 16 3 C 0.20 2.53 12.55 180.10 2.26 4.79 16 4 N -0.49 -11.06 7.68 -188.82 -1.45 -12.51 16 5 C -0.09 -2.58 6.71 40.50 0.27 -2.30 16 6 C 0.58 22.68 7.68 86.63 0.66 23.35 16 7 O -0.60 -27.62 16.33 -4.09 -0.07 -27.69 16 8 N -0.59 -22.53 2.97 -822.91 -2.45 -24.98 16 9 C 0.06 1.85 6.32 86.36 0.55 2.40 16 10 C -0.11 -3.15 6.08 30.67 0.19 -2.96 16 11 C -0.12 -4.23 5.35 30.62 0.16 -4.07 16 12 C 0.17 7.75 2.92 45.07 0.13 7.88 16 13 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 14 N -0.73 -40.03 5.12 -322.57 -1.65 -41.68 16 15 C -0.25 -15.05 9.93 84.03 0.83 -14.22 16 16 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 17 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 18 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 19 Si 0.97 48.94 29.55 68.60 2.03 50.97 16 20 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 23 C 0.11 4.80 6.00 86.36 0.52 5.32 16 24 C 0.04 0.83 11.27 83.72 0.94 1.78 16 25 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.26 0.35 8.06 -2.91 -0.02 0.32 16 29 H 0.17 4.46 3.66 -53.51 -0.20 4.26 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.38 21.58 7.80 -92.71 -0.72 20.86 16 36 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.05 2.59 7.05 -2.39 -0.02 2.58 16 39 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -83.72 322.75 3.53 -80.19 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.15 Total: 23.77 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 8.41 Total: 19.76 kcal Atomic # 7 Polarization: -140.00 SS G_CDS: -6.99 Total: -146.99 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.07 Total: -27.69 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -83.72 3.53 -80.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998915808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.374 kcal (2) G-P(sol) polarization free energy of solvation -83.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds