Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36354 * 120.43728 * 2 1 4 4 C 1.34974 * 120.87664 * 180.02562 * 3 2 1 5 5 N 1.33271 * 121.73515 * 359.97438 * 4 3 2 6 6 C 1.31579 * 120.75346 * 0.02999 * 5 4 3 7 7 N 1.38864 * 120.45322 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.53040 * 109.45290 * 84.96939 * 8 7 6 10 10 C 1.53191 * 109.31462 * 181.37985 * 9 8 7 11 11 N 1.46929 * 108.77251 * 305.36323 * 10 9 8 12 12 C 1.36943 * 120.62913 * 233.58698 * 11 10 9 13 13 H 1.08000 * 119.99404 * 27.69419 * 12 11 10 14 14 C 1.38804 * 119.99837 * 207.69755 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.35070 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.35548 * 14 12 11 17 17 H 1.48500 * 109.46986 * 59.99796 * 16 14 12 18 18 H 1.48495 * 109.47095 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46875 * 300.00013 * 16 14 12 20 20 C 1.46924 * 118.74006 * 53.60682 * 11 10 9 21 21 C 1.53048 * 109.45605 * 205.02979 * 8 7 6 22 22 C 1.35175 * 120.43701 * 180.32670 * 2 1 3 23 23 O 1.21937 * 120.79242 * 359.95396 * 22 2 1 24 24 H 1.09001 * 109.47168 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47365 * 119.99664 * 1 2 3 26 26 H 1.09002 * 109.47130 * 240.00038 * 1 2 3 27 27 H 1.08004 * 119.56179 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.13421 * 180.02562 * 4 3 2 29 29 H 0.96997 * 119.99754 * 179.97438 * 7 6 5 30 30 H 1.09003 * 109.46150 * 324.99543 * 8 7 6 31 31 H 1.09004 * 109.49060 * 301.32819 * 9 8 7 32 32 H 1.08994 * 109.49889 * 61.42422 * 9 8 7 33 33 H 1.08996 * 109.58661 * 185.57370 * 10 9 8 34 34 H 1.08999 * 109.58740 * 65.14438 * 10 9 8 35 35 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.58430 * 186.60482 * 20 11 10 37 37 H 1.08998 * 109.70564 * 66.25092 * 20 11 10 38 38 H 1.09005 * 109.49661 * 298.57592 * 21 8 7 39 39 H 1.08999 * 109.49769 * 58.67377 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1558 1.1756 0.0000 4 6 3.5055 1.1860 -0.0005 5 7 4.2151 0.0579 -0.0005 6 6 3.6163 -1.1137 -0.0006 7 7 4.3619 -2.2852 -0.0001 8 6 5.8255 -2.2219 0.0000 9 6 6.3291 -2.0729 1.4374 10 6 7.8577 -1.9725 1.4309 11 7 8.4049 -3.1344 0.7172 12 6 9.3487 -3.9335 1.3054 13 1 9.3854 -4.0236 2.3810 14 6 10.2579 -4.6276 0.5192 15 7 10.4488 -4.2742 -0.7341 16 14 11.2107 -6.0637 1.2401 17 1 10.2599 -7.1090 1.6969 18 1 12.1103 -6.6309 0.2037 19 1 12.0195 -5.5923 2.3928 20 6 7.9207 -3.4223 -0.6397 21 6 6.3913 -3.5065 -0.6100 22 6 2.1498 -1.1654 -0.0066 23 8 1.5629 -2.2343 -0.0119 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6157 2.1109 0.0004 28 1 4.0240 2.1333 -0.0001 29 1 3.9136 -3.1453 0.0002 30 1 6.1520 -1.3654 -0.5899 31 1 5.9071 -1.1701 1.8789 32 1 6.0241 -2.9411 2.0216 33 1 8.2278 -1.9658 2.4561 34 1 8.1616 -1.0563 0.9245 35 1 11.0845 -4.7590 -1.2834 36 1 8.3324 -4.3722 -0.9807 37 1 8.2297 -2.6260 -1.3169 38 1 6.0857 -4.3612 -0.0065 39 1 6.0136 -3.6240 -1.6257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 36.969870 kcal Electronic energy + Delta-G solvation = -21735.450454 eV Core-core repulsion = 18486.302087 eV Total energy + Delta-G solvation = -3249.148368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36013 -38.19594 -37.43746 -36.12325 -34.17637 -32.13263 -30.34813 -29.61310 -28.88838 -28.06738 -25.11576 -23.45289 -23.27239 -22.10160 -21.40661 -19.46214 -18.35755 -17.72923 -16.83418 -16.71558 -16.32216 -15.43031 -14.96832 -14.59102 -14.31321 -13.96212 -13.69990 -13.49793 -13.33188 -13.08718 -12.86018 -12.82230 -12.51305 -12.30856 -11.46685 -11.29993 -11.21969 -11.06428 -10.74406 -10.68342 -10.39590 -10.22090 -10.00445 -9.77157 -9.53078 -9.15877 -9.08656 -8.44044 -7.14742 -6.66018 -5.76832 -3.18273 0.93890 1.77348 2.23242 3.33983 3.41250 3.46506 3.48049 3.71908 4.16093 4.52391 4.57650 4.71736 4.84235 4.95454 5.23757 5.36686 5.40611 5.46842 5.55574 5.62843 5.67486 5.95690 6.12818 6.26079 6.34544 6.53089 6.54915 6.60000 6.66437 6.71444 6.84246 7.03225 7.25672 7.35394 7.46116 7.65187 7.72364 7.82097 8.28557 8.47447 9.23638 9.87199 10.43861 11.32076 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042988 B = 0.003644 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.188254 B = 7682.278520 C = 7913.478315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.487 5.487 3 C -0.026 4.026 4 C 0.034 3.966 5 N -0.511 5.511 6 C 0.359 3.641 7 N -0.680 5.680 8 C 0.162 3.838 9 C -0.138 4.138 10 C 0.149 3.851 11 N -0.593 5.593 12 C -0.253 4.253 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.176 3.824 21 C -0.149 4.149 22 C 0.478 3.522 23 O -0.537 6.537 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.411 0.589 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.022 0.978 38 H 0.060 0.940 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.239 10.959 0.242 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.204 5.204 3 C -0.152 4.152 4 C -0.106 4.106 5 N -0.240 5.240 6 C 0.094 3.906 7 N -0.313 5.313 8 C 0.059 3.941 9 C -0.179 4.179 10 C 0.022 3.978 11 N -0.316 5.316 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.209 1.209 20 C 0.049 3.951 21 C -0.189 4.189 22 C 0.268 3.732 23 O -0.414 6.414 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.182 0.818 29 H 0.248 0.752 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.531 10.473 0.120 20.421 hybrid contribution -0.666 -0.894 0.317 1.159 sum -18.197 9.579 0.437 20.569 Atomic orbital electron populations 1.22045 0.76885 1.03815 1.04013 1.45034 1.08557 1.06044 1.60798 1.22258 0.94285 0.89395 1.09231 1.21468 0.89168 0.96588 1.03336 1.67593 1.38595 0.96290 1.21516 1.21240 0.86165 0.88807 0.94418 1.44988 1.06763 1.04076 1.75426 1.21122 0.75584 0.99904 0.97498 1.22390 0.99009 1.00714 0.95748 1.20867 0.89992 0.90399 0.96523 1.44095 1.45341 1.27630 1.14499 1.19156 1.07170 1.20416 0.91470 0.91691 1.25026 0.97147 1.00865 0.96595 1.70016 1.36860 1.40358 1.07551 0.86371 0.79465 0.82887 0.78064 1.21060 1.21656 1.20906 1.20730 0.86278 1.01774 0.86273 1.22586 1.01371 0.95813 0.99173 1.19250 0.88777 0.83928 0.81223 1.90927 1.70912 1.27813 1.51794 0.89283 0.90445 0.90448 0.82584 0.81803 0.75174 0.89465 0.92580 0.92549 0.92672 0.96052 0.93569 0.89027 0.96031 0.92161 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.22 59.85 0.61 1.14 16 2 N -0.49 -5.27 3.02 -124.84 -0.38 -5.65 16 3 C -0.03 -0.23 10.32 -16.70 -0.17 -0.40 16 4 C 0.03 0.37 11.02 -18.09 -0.20 0.17 16 5 N -0.51 -7.59 9.35 -11.04 -0.10 -7.69 16 6 C 0.36 5.54 7.71 -152.75 -1.18 4.37 16 7 N -0.68 -10.82 5.22 -51.87 -0.27 -11.09 16 8 C 0.16 2.86 2.44 -67.89 -0.17 2.70 16 9 C -0.14 -2.54 5.66 -26.61 -0.15 -2.69 16 10 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 11 N -0.59 -14.88 3.00 -172.32 -0.52 -15.39 16 12 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 13 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 14 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 15 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 16 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.18 4.16 5.31 -3.71 -0.02 4.14 16 21 C -0.15 -2.84 5.55 -26.61 -0.15 -2.99 16 22 C 0.48 6.97 7.66 -12.64 -0.10 6.87 16 23 O -0.54 -9.00 16.72 4.98 0.08 -8.91 16 24 H 0.09 0.33 7.78 -51.93 -0.40 -0.08 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.16 0.74 7.87 -52.48 -0.41 0.33 16 28 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.41 6.28 8.19 -40.82 -0.33 5.95 16 30 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -32.31 321.08 -8.15 -40.46 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.62 Total: 2.91 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.77 Total: 9.35 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.65 Total: -65.34 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.31 -8.15 -40.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.429 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds