Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36354 * 120.43728 * 2 1 4 4 C 1.34974 * 120.87664 * 180.02562 * 3 2 1 5 5 N 1.33271 * 121.73515 * 359.97438 * 4 3 2 6 6 C 1.31579 * 120.75346 * 0.02999 * 5 4 3 7 7 N 1.38864 * 120.45322 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.53040 * 109.45290 * 84.96939 * 8 7 6 10 10 C 1.53191 * 109.31462 * 181.37985 * 9 8 7 11 11 N 1.46929 * 108.77251 * 305.36323 * 10 9 8 12 12 C 1.36943 * 120.62913 * 233.58698 * 11 10 9 13 13 H 1.08000 * 119.99404 * 27.69419 * 12 11 10 14 14 C 1.38804 * 119.99837 * 207.69755 * 12 11 10 15 15 N 1.31618 * 120.00488 * 17.35070 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.35548 * 14 12 11 17 17 H 1.48500 * 109.46986 * 59.99796 * 16 14 12 18 18 H 1.48495 * 109.47095 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46875 * 300.00013 * 16 14 12 20 20 C 1.46924 * 118.74006 * 53.60682 * 11 10 9 21 21 C 1.53048 * 109.45605 * 205.02979 * 8 7 6 22 22 C 1.35175 * 120.43701 * 180.32670 * 2 1 3 23 23 O 1.21937 * 120.79242 * 359.95396 * 22 2 1 24 24 H 1.09001 * 109.47168 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47365 * 119.99664 * 1 2 3 26 26 H 1.09002 * 109.47130 * 240.00038 * 1 2 3 27 27 H 1.08004 * 119.56179 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.13421 * 180.02562 * 4 3 2 29 29 H 0.96997 * 119.99754 * 179.97438 * 7 6 5 30 30 H 1.09003 * 109.46150 * 324.99543 * 8 7 6 31 31 H 1.09004 * 109.49060 * 301.32819 * 9 8 7 32 32 H 1.08994 * 109.49889 * 61.42422 * 9 8 7 33 33 H 1.08996 * 109.58661 * 185.57370 * 10 9 8 34 34 H 1.08999 * 109.58740 * 65.14438 * 10 9 8 35 35 H 0.97003 * 120.00197 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.58430 * 186.60482 * 20 11 10 37 37 H 1.08998 * 109.70564 * 66.25092 * 20 11 10 38 38 H 1.09005 * 109.49661 * 298.57592 * 21 8 7 39 39 H 1.08999 * 109.49769 * 58.67377 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1558 1.1756 0.0000 4 6 3.5055 1.1860 -0.0005 5 7 4.2151 0.0579 -0.0005 6 6 3.6163 -1.1137 -0.0006 7 7 4.3619 -2.2852 -0.0001 8 6 5.8255 -2.2219 0.0000 9 6 6.3291 -2.0729 1.4374 10 6 7.8577 -1.9725 1.4309 11 7 8.4049 -3.1344 0.7172 12 6 9.3487 -3.9335 1.3054 13 1 9.3854 -4.0236 2.3810 14 6 10.2579 -4.6276 0.5192 15 7 10.4488 -4.2742 -0.7341 16 14 11.2107 -6.0637 1.2401 17 1 10.2599 -7.1090 1.6969 18 1 12.1103 -6.6309 0.2037 19 1 12.0195 -5.5923 2.3928 20 6 7.9207 -3.4223 -0.6397 21 6 6.3913 -3.5065 -0.6100 22 6 2.1498 -1.1654 -0.0066 23 8 1.5629 -2.2343 -0.0119 24 1 -0.3633 1.0277 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6157 2.1109 0.0004 28 1 4.0240 2.1333 -0.0001 29 1 3.9136 -3.1453 0.0002 30 1 6.1520 -1.3654 -0.5899 31 1 5.9071 -1.1701 1.8789 32 1 6.0241 -2.9411 2.0216 33 1 8.2278 -1.9658 2.4561 34 1 8.1616 -1.0563 0.9245 35 1 11.0845 -4.7590 -1.2834 36 1 8.3324 -4.3722 -0.9807 37 1 8.2297 -2.6260 -1.3169 38 1 6.0857 -4.3612 -0.0065 39 1 6.0136 -3.6240 -1.6257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110824867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = 15.514766 kcal Electronic energy + Delta-G solvation = -21736.380817 eV Core-core repulsion = 18486.302087 eV Total energy + Delta-G solvation = -3250.078731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32844 -39.68955 -38.48277 -37.41184 -35.54913 -33.84448 -31.93385 -31.28123 -29.96481 -28.95317 -26.87889 -24.66447 -24.36466 -23.75309 -22.90902 -21.02284 -19.57404 -18.71977 -18.59540 -17.78117 -17.24602 -16.86523 -16.50425 -16.04882 -15.51864 -15.34188 -15.10756 -14.92326 -14.71080 -14.25524 -14.14350 -14.01764 -13.72065 -13.37256 -13.18061 -12.98603 -12.57026 -12.53257 -12.41349 -12.26389 -12.06152 -11.95324 -11.78263 -11.41631 -11.26971 -10.54134 -10.34333 -10.13337 -8.69491 -8.14867 -7.86629 -5.31278 -0.01531 0.77691 1.33201 1.48619 1.51088 1.57917 2.28518 2.52978 2.75522 3.23289 3.29287 3.65608 3.77632 3.94077 4.01831 4.09985 4.24992 4.40217 4.40598 4.48574 4.59483 4.68358 4.74440 4.80438 4.85448 4.96593 5.07463 5.15148 5.18516 5.33329 5.48524 5.51095 5.65382 5.69669 5.74988 6.08060 6.37807 6.40390 6.71401 7.15724 7.26224 7.86171 8.38516 9.20297 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042988 B = 0.003644 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.188254 B = 7682.278520 C = 7913.478315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.479 5.479 3 C 0.016 3.984 4 C -0.003 4.003 5 N -0.520 5.520 6 C 0.323 3.677 7 N -0.690 5.690 8 C 0.182 3.818 9 C -0.121 4.121 10 C 0.148 3.852 11 N -0.610 5.610 12 C -0.266 4.266 13 H 0.066 0.934 14 C -0.049 4.049 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.275 1.275 20 C 0.183 3.817 21 C -0.134 4.134 22 C 0.465 3.535 23 O -0.573 6.573 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.215 0.785 28 H 0.193 0.807 29 H 0.412 0.588 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.001 0.999 38 H 0.059 0.941 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.554 13.033 0.904 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.194 5.194 3 C -0.110 4.110 4 C -0.142 4.142 5 N -0.248 5.248 6 C 0.060 3.940 7 N -0.325 5.325 8 C 0.077 3.923 9 C -0.162 4.162 10 C 0.022 3.978 11 N -0.334 5.334 12 C -0.396 4.396 13 H 0.084 0.916 14 C -0.244 4.244 15 N -0.580 5.580 16 Si 0.796 3.204 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.201 1.201 20 C 0.057 3.943 21 C -0.174 4.174 22 C 0.257 3.743 23 O -0.454 6.454 24 H 0.154 0.846 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.231 0.769 28 H 0.210 0.790 29 H 0.249 0.751 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.019 0.981 38 H 0.077 0.923 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.902 12.611 0.797 23.575 hybrid contribution -0.090 -1.244 0.111 1.252 sum -19.992 11.366 0.908 23.015 Atomic orbital electron populations 1.22408 0.74296 1.06887 1.03895 1.45362 1.10305 1.05634 1.58128 1.23103 0.94028 0.90408 1.03482 1.22054 0.90548 0.96364 1.05218 1.67523 1.40493 0.97245 1.19563 1.21239 0.86779 0.88605 0.97363 1.44550 1.05475 1.04643 1.77833 1.20637 0.77168 0.98170 0.96318 1.22177 0.96512 1.00959 0.96522 1.20961 0.91916 0.88961 0.95982 1.44344 1.45391 1.28687 1.14953 1.19489 1.07505 1.20826 0.91783 0.91596 1.25779 0.98399 1.03210 0.97027 1.70171 1.37653 1.41394 1.08753 0.85343 0.78079 0.79750 0.77276 1.20519 1.21942 1.20122 1.20508 0.89146 0.99248 0.85427 1.22319 0.97908 0.96786 1.00408 1.19177 0.88529 0.84684 0.81934 1.90896 1.71291 1.29107 1.54125 0.84567 0.90643 0.90642 0.76885 0.79039 0.75145 0.90795 0.91433 0.93037 0.92592 0.96460 0.94013 0.92132 0.98076 0.92254 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.22 127.77 1.31 1.98 16 2 N -0.48 -8.75 3.02 -666.78 -2.01 -10.77 16 3 C 0.02 0.21 10.32 83.24 0.86 1.07 16 4 C 0.00 -0.06 11.02 83.72 0.92 0.86 16 5 N -0.52 -14.73 9.35 -188.83 -1.76 -16.50 16 6 C 0.32 9.81 7.71 135.36 1.04 10.86 16 7 N -0.69 -22.20 5.22 -318.03 -1.66 -23.86 16 8 C 0.18 6.50 2.44 45.02 0.11 6.61 16 9 C -0.12 -4.47 5.66 30.67 0.17 -4.30 16 10 C 0.15 6.42 6.52 86.36 0.56 6.98 16 11 N -0.61 -31.46 3.00 -699.10 -2.09 -33.55 16 12 C -0.27 -14.92 9.58 84.03 0.81 -14.11 16 13 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 14 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 15 N -0.93 -55.70 11.19 21.65 0.24 -55.46 16 16 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.18 9.01 5.31 86.36 0.46 9.47 16 21 C -0.13 -5.24 5.55 30.67 0.17 -5.07 16 22 C 0.47 13.06 7.66 86.40 0.66 13.72 16 23 O -0.57 -19.19 16.72 -5.11 -0.09 -19.28 16 24 H 0.14 0.13 7.78 -2.39 -0.02 0.11 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.21 0.35 7.87 -2.91 -0.02 0.33 16 28 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.41 12.90 8.19 -92.71 -0.76 12.14 16 30 H 0.07 2.84 7.57 -2.39 -0.02 2.82 16 31 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.06 3.35 6.04 -2.38 -0.01 3.33 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.34 321.08 2.44 -70.90 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.30 Total: 15.38 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 7.49 Total: 25.74 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -7.29 Total: -140.14 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.09 Total: -19.28 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.34 2.44 -70.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.419 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds