Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35849 * 126.13752 * 2 1 4 4 N 1.30166 * 109.00176 * 179.73796 * 3 2 1 5 5 C 1.35756 * 108.87046 * 0.38751 * 4 3 2 6 6 C 1.47320 * 126.24144 * 179.88231 * 5 4 3 7 7 O 1.21621 * 120.00410 * 179.68063 * 6 5 4 8 8 N 1.34782 * 119.99549 * 359.68858 * 6 5 4 9 9 C 1.46501 * 119.99785 * 180.02562 * 8 6 5 10 10 C 1.53048 * 109.45759 * 275.06099 * 9 8 6 11 11 C 1.53185 * 109.31062 * 178.61494 * 10 9 8 12 12 N 1.46921 * 108.77703 * 54.63774 * 11 10 9 13 13 C 1.36941 * 120.63494 * 126.41106 * 12 11 10 14 14 H 1.08002 * 119.99770 * 332.61145 * 13 12 11 15 15 C 1.38806 * 120.00591 * 152.60680 * 13 12 11 16 16 N 1.31613 * 120.00472 * 159.34700 * 15 13 12 17 17 Si 1.86807 * 119.99920 * 339.34647 * 15 13 12 18 18 H 1.48496 * 109.47163 * 92.93974 * 17 15 13 19 19 H 1.48494 * 109.47092 * 212.94235 * 17 15 13 20 20 H 1.48504 * 109.46704 * 332.94383 * 17 15 13 21 21 C 1.46933 * 118.73877 * 306.38891 * 12 11 10 22 22 C 1.53039 * 109.46323 * 154.99610 * 9 8 6 23 23 C 1.35377 * 126.13386 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.46962 * 270.02946 * 1 2 3 25 25 H 1.09003 * 109.46558 * 30.02273 * 1 2 3 26 26 H 1.08995 * 109.47277 * 150.02506 * 1 2 3 27 27 H 1.08002 * 125.49291 * 359.97283 * 3 2 1 28 28 H 0.97000 * 120.00433 * 0.26552 * 8 6 5 29 29 H 1.08994 * 109.46087 * 35.01752 * 9 8 6 30 30 H 1.09002 * 109.49742 * 298.56846 * 10 9 8 31 31 H 1.09001 * 109.49347 * 58.66548 * 10 9 8 32 32 H 1.08998 * 109.59068 * 294.84364 * 11 10 9 33 33 H 1.09003 * 109.69931 * 174.49250 * 11 10 9 34 34 H 0.96996 * 120.00542 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.58119 * 293.81858 * 21 12 11 36 36 H 1.09002 * 109.70023 * 173.46468 * 21 12 11 37 37 H 1.08996 * 109.49601 * 301.33704 * 22 9 8 38 38 H 1.09004 * 109.49355 * 61.39321 * 22 9 8 39 39 H 1.08006 * 126.56136 * 0.04649 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2662 1.0971 0.0000 4 7 3.5101 0.7136 0.0056 5 6 3.5512 -0.6433 0.0008 6 6 4.7652 -1.4779 0.0021 7 8 4.6697 -2.6903 0.0031 8 7 5.9817 -0.8976 0.0023 9 6 7.1890 -1.7275 0.0030 10 6 7.5366 -2.1207 1.4408 11 6 8.7791 -3.0166 1.4347 12 7 9.8594 -2.3221 0.7212 13 6 11.0832 -2.1450 1.3096 14 1 11.1626 -2.0929 2.3855 15 6 12.2217 -2.0327 0.5235 16 7 13.3068 -1.4715 1.0132 17 14 12.2137 -2.6780 -1.2295 18 1 11.8413 -1.5815 -2.1590 19 1 13.5660 -3.1837 -1.5770 20 1 11.2273 -3.7821 -1.3459 21 6 9.6020 -1.8214 -0.6360 22 6 8.3503 -0.9389 -0.6067 23 6 2.2633 -1.0934 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.9258 2.1221 -0.0004 28 1 6.0579 0.0693 0.0055 29 1 7.0118 -2.6270 -0.5864 30 1 7.7383 -1.2227 2.0248 31 1 6.6998 -2.6621 1.8822 32 1 8.5509 -3.9546 0.9286 33 1 9.0900 -3.2206 2.4593 34 1 14.1023 -1.3927 0.4637 35 1 9.4409 -2.6620 -1.3110 36 1 10.4545 -1.2352 -0.9792 37 1 8.0927 -0.6391 -1.6225 38 1 8.5439 -0.0518 -0.0037 39 1 1.9421 -2.1245 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230162214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 51.203065 kcal Electronic energy + Delta-G solvation = -21424.702859 eV Core-core repulsion = 18176.171689 eV Total energy + Delta-G solvation = -3248.531170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.39499 -39.39742 -37.44343 -34.55509 -34.30826 -32.05662 -30.38283 -30.26721 -29.73442 -27.59688 -25.08343 -23.31849 -22.70001 -21.68110 -21.29828 -19.97651 -19.49704 -18.04530 -16.80002 -16.20256 -16.11304 -15.88512 -15.02444 -14.63011 -14.43934 -14.09660 -14.03091 -13.69748 -13.58605 -13.31557 -13.24925 -12.91640 -12.76331 -12.29768 -11.90902 -11.69848 -10.89891 -10.74617 -10.53076 -10.45448 -10.19770 -10.11128 -10.07217 -9.87868 -9.63560 -9.39534 -8.92580 -8.59079 -8.56444 -6.92105 -5.89225 -3.24528 1.43971 2.24952 2.30320 3.36992 3.46724 3.53959 3.58059 3.62347 4.19645 4.24731 4.47667 4.57119 4.58725 4.83924 4.98058 5.04483 5.22117 5.35291 5.42101 5.50479 5.72051 5.78781 5.92710 6.14051 6.17518 6.23822 6.28625 6.43735 6.52083 6.66254 6.69578 6.73226 6.75911 6.89252 7.02418 7.49023 7.88707 8.02536 8.38947 8.47330 9.00272 9.78117 10.16391 11.26882 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044586 B = 0.003448 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.849604 B = 8118.579700 C = 8187.464510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.463 5.463 3 C 0.182 3.818 4 N -0.462 5.462 5 C -0.058 4.058 6 C 0.600 3.400 7 O -0.549 6.549 8 N -0.708 5.708 9 C 0.151 3.849 10 C -0.141 4.141 11 C 0.151 3.849 12 N -0.607 5.607 13 C -0.257 4.257 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 0.881 3.119 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.130 3.870 22 C -0.140 4.140 23 C 0.029 3.971 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.211 0.789 28 H 0.405 0.595 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.489 5.093 -3.316 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.146 5.146 3 C -0.101 4.101 4 N -0.181 5.181 5 C -0.187 4.187 6 C 0.385 3.615 7 O -0.427 6.427 8 N -0.357 5.357 9 C 0.047 3.953 10 C -0.181 4.181 11 C 0.025 3.975 12 N -0.330 5.330 13 C -0.386 4.386 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.553 5.553 17 Si 0.712 3.288 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.195 1.195 21 C 0.003 3.997 22 C -0.180 4.180 23 C -0.110 4.110 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.228 0.772 28 H 0.240 0.760 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.776 4.769 -3.314 27.399 hybrid contribution -0.717 -0.185 -0.999 1.243 sum -27.493 4.585 -4.312 28.204 Atomic orbital electron populations 1.22136 0.75890 1.05097 1.04038 1.45352 1.08199 1.06970 1.54049 1.25201 0.85215 0.93567 1.06155 1.70617 1.19484 1.10544 1.17482 1.20723 0.93406 0.90454 1.14091 1.16907 0.82074 0.86368 0.76125 1.90786 1.86887 1.13371 1.51642 1.46065 1.05195 1.10965 1.73512 1.21007 0.82612 0.94075 0.97578 1.22385 0.98952 1.01067 0.95731 1.20894 0.86994 0.92616 0.97006 1.44409 1.10620 1.64203 1.13817 1.18940 0.81897 1.44592 0.93131 0.89655 1.25278 0.95217 0.99381 0.97797 1.69835 1.03609 1.44422 1.37431 0.86966 0.76009 0.79861 0.85974 1.21608 1.23203 1.19455 1.21300 0.95384 0.95246 0.87726 1.22335 0.95731 0.99995 0.99934 1.22616 0.90269 0.93174 1.04909 0.90096 0.89048 0.89290 0.77238 0.76004 0.89897 0.91799 0.92245 0.95699 0.91624 0.92823 0.95487 0.90544 0.92215 0.91071 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.15 59.85 0.67 0.83 16 2 N -0.46 -3.38 3.13 -125.77 -0.39 -3.77 16 3 C 0.18 1.53 12.55 -89.91 -1.13 0.40 16 4 N -0.46 -5.77 11.01 -11.03 -0.12 -5.89 16 5 C -0.06 -0.78 6.98 -83.09 -0.58 -1.36 16 6 C 0.60 9.81 7.77 -12.56 -0.10 9.72 16 7 O -0.55 -10.39 16.54 5.26 0.09 -10.30 16 8 N -0.71 -11.26 5.07 -54.87 -0.28 -11.54 16 9 C 0.15 2.68 2.42 -67.88 -0.16 2.52 16 10 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 11 C 0.15 3.19 6.52 -3.72 -0.02 3.16 16 12 N -0.61 -14.89 2.77 -172.33 -0.48 -15.37 16 13 C -0.26 -7.35 10.03 -15.06 -0.15 -7.50 16 14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.02 0.64 5.23 -17.44 -0.09 0.55 16 16 N -0.91 -28.31 13.97 55.49 0.78 -27.54 16 17 Si 0.88 22.80 24.35 -169.99 -4.14 18.67 16 18 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 19 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 20 H -0.27 -6.89 6.63 56.52 0.37 -6.52 16 21 C 0.13 2.91 4.20 -3.71 -0.02 2.89 16 22 C -0.14 -2.57 5.55 -26.62 -0.15 -2.72 16 23 C 0.03 0.30 11.26 -16.64 -0.19 0.11 16 24 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.41 5.93 8.32 -40.82 -0.34 5.59 16 29 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.03 0.60 7.07 -51.93 -0.37 0.24 16 36 H 0.08 1.85 4.50 -51.93 -0.23 1.62 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -35.82 319.52 -7.39 -43.21 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.59 Total: 1.89 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.07 Total: 5.84 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.50 Total: -64.11 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.82 -7.39 -43.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230162214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.415 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds