Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40037 * 126.07685 * 2 1 4 4 C 1.31329 * 108.75735 * 179.97438 * 3 2 1 5 5 N 1.40027 * 125.69200 * 179.97438 * 4 3 2 6 6 C 1.39840 * 108.61524 * 359.75813 * 4 3 2 7 7 C 1.36668 * 126.08061 * 179.97438 * 2 1 3 8 8 C 1.47172 * 126.42281 * 0.02562 * 7 2 1 9 9 O 1.21631 * 119.99607 * 26.13625 * 8 7 2 10 10 N 1.34772 * 120.00238 * 206.14407 * 8 7 2 11 11 C 1.46929 * 120.63225 * 0.70040 * 10 8 7 12 12 C 1.53185 * 108.77509 * 126.66725 * 11 10 8 13 13 C 1.53045 * 109.31442 * 54.64093 * 12 11 10 14 14 C 1.50699 * 109.45249 * 178.62194 * 13 12 11 15 15 H 1.08002 * 120.00145 * 120.06050 * 14 13 12 16 16 C 1.37879 * 119.99433 * 300.05568 * 14 13 12 17 17 N 1.31512 * 120.00261 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99673 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47158 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46883 * 120.00514 * 18 16 14 21 21 H 1.48497 * 109.47268 * 240.00335 * 18 16 14 22 22 C 1.53041 * 109.53633 * 298.63478 * 13 12 11 23 23 C 1.46930 * 120.63166 * 180.98950 * 10 8 7 24 24 H 1.09002 * 109.47381 * 264.47291 * 1 2 3 25 25 H 1.08999 * 109.47212 * 24.47626 * 1 2 3 26 26 H 1.09000 * 109.47092 * 144.47777 * 1 2 3 27 27 H 0.96997 * 120.00213 * 359.97438 * 5 4 3 28 28 H 0.97005 * 119.99569 * 179.97438 * 5 4 3 29 29 H 1.07998 * 126.19485 * 180.27848 * 6 4 3 30 30 H 1.08998 * 109.58568 * 246.45930 * 11 10 8 31 31 H 1.08997 * 109.58123 * 6.88075 * 11 10 8 32 32 H 1.08996 * 109.50428 * 294.68742 * 12 11 10 33 33 H 1.09001 * 109.50138 * 174.58876 * 12 11 10 34 34 H 1.08999 * 109.45932 * 58.64698 * 13 12 11 35 35 H 0.97004 * 120.00171 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.49657 * 301.41462 * 22 13 12 37 37 H 1.08996 * 109.50240 * 181.31576 * 22 13 12 38 38 H 1.08998 * 109.58373 * 353.11453 * 23 10 8 39 39 H 1.08994 * 109.59368 * 113.39986 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2896 1.1318 0.0000 4 6 3.5433 0.7408 0.0006 5 7 4.6618 1.5833 0.0002 6 6 3.5749 -0.6572 0.0065 7 6 2.2698 -1.1045 0.0005 8 6 1.8273 -2.5082 0.0006 9 8 0.7428 -2.8039 -0.4638 10 7 2.6238 -3.4658 0.5153 11 6 3.9299 -3.1221 1.0938 12 6 4.0081 -3.6975 2.5113 13 6 3.7170 -5.1993 2.4648 14 6 3.8263 -5.7749 3.8533 15 1 2.9729 -6.2570 4.3068 16 6 5.0160 -5.6862 4.5445 17 7 6.0551 -5.0989 3.9923 18 14 5.1515 -6.3991 6.2658 19 1 3.8512 -7.0010 6.6560 20 1 6.2065 -7.4440 6.2872 21 1 5.5046 -5.3196 7.2223 22 6 2.3028 -5.4300 1.9272 23 6 2.2052 -4.8742 0.5030 24 1 -0.3634 -0.0990 1.0229 25 1 -0.3633 0.9353 -0.4258 26 1 -0.3633 -0.8364 -0.5971 27 1 4.5438 2.5461 -0.0008 28 1 5.5546 1.2040 0.0011 29 1 4.4607 -1.2751 0.0126 30 1 4.7244 -3.5491 0.4817 31 1 4.0384 -2.0383 1.1329 32 1 3.2720 -3.2037 3.1456 33 1 5.0067 -3.5330 2.9163 34 1 4.4384 -5.6890 1.8107 35 1 6.8923 -5.0368 4.4785 36 1 1.5826 -4.9198 2.5670 37 1 2.0874 -6.4984 1.9163 38 1 1.1757 -4.9462 0.1523 39 1 2.8574 -5.4435 -0.1591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579994519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 58.886234 kcal Electronic energy + Delta-G solvation = -22143.830215 eV Core-core repulsion = 18895.632213 eV Total energy + Delta-G solvation = -3248.198003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24454 -39.25540 -36.92338 -34.81893 -33.69326 -31.98564 -31.20593 -30.47685 -29.43669 -26.55438 -25.89415 -23.87112 -22.54798 -21.84553 -20.67348 -19.74172 -18.67656 -17.04956 -16.71480 -16.27042 -15.92291 -15.61386 -15.25737 -14.71753 -14.60981 -14.46931 -13.80556 -13.33663 -13.09040 -13.02402 -12.74087 -12.50906 -12.38466 -12.29496 -11.64657 -11.26118 -10.98710 -10.69719 -10.64326 -10.47044 -10.41465 -10.12932 -9.80312 -9.57975 -9.21689 -8.98488 -8.65407 -8.41283 -8.08542 -7.80515 -6.05769 -4.11577 1.35225 2.29225 2.86611 3.25416 3.25819 3.34475 3.38247 3.41997 3.89498 4.39078 4.55472 4.84855 5.24274 5.30466 5.43849 5.45297 5.58842 5.64140 5.69748 5.77219 5.88882 6.05147 6.07610 6.28640 6.33402 6.38951 6.59953 6.80526 6.91174 6.97779 7.09770 7.23198 7.31667 7.47141 7.62650 7.76717 7.88992 8.00907 8.11087 8.32865 8.37506 8.91878 9.53725 10.99854 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.004922 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.070160 B = 5686.826576 C = 6468.939187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.342 5.342 3 N -0.339 5.339 4 C 0.332 3.668 5 N -0.846 5.846 6 C -0.274 4.274 7 C 0.074 3.926 8 C 0.576 3.424 9 O -0.555 6.555 10 N -0.575 5.575 11 C 0.066 3.934 12 C -0.122 4.122 13 C 0.047 3.953 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.112 3.888 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.401 0.599 28 H 0.411 0.589 29 H 0.170 0.830 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 9.638 -8.168 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.125 5.125 3 N -0.174 5.174 4 C 0.074 3.926 5 N -0.398 5.398 6 C -0.308 4.308 7 C -0.058 4.058 8 C 0.362 3.638 9 O -0.435 6.435 10 N -0.306 5.306 11 C -0.055 4.055 12 C -0.161 4.161 13 C 0.028 3.972 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.009 4.009 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.229 0.771 28 H 0.241 0.759 29 H 0.187 0.813 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.783 10.394 -8.355 14.167 hybrid contribution 1.089 -0.801 1.095 1.740 sum -3.694 9.593 -7.260 12.584 Atomic orbital electron populations 1.22014 0.73293 1.04919 1.03693 1.48229 1.06208 1.01384 1.56657 1.77312 0.99684 1.06524 1.33841 1.18993 0.87935 0.89694 0.95960 1.41307 1.03832 1.07322 1.87351 1.21822 0.96641 0.93077 1.19234 1.20970 0.90898 0.89462 1.04469 1.17111 0.84281 0.83329 0.79053 1.90735 1.21743 1.82639 1.48343 1.48004 1.19338 1.07146 1.56128 1.23024 0.82364 1.02628 0.97489 1.22008 1.04367 0.98314 0.91389 1.18668 0.90158 0.92219 0.96133 1.21238 0.97028 1.36486 1.00215 0.92655 1.24948 0.95811 0.95229 0.97928 1.69836 1.01990 1.43725 1.37501 0.86571 0.78056 0.78888 0.84702 1.19844 1.21037 1.21062 1.22019 1.01274 0.99647 0.93196 1.21807 1.00561 0.79252 0.99311 0.90948 0.89423 0.87936 0.77050 0.75908 0.81305 0.91552 0.87914 0.94317 0.87613 0.95359 0.93021 0.92880 0.91882 0.90087 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 11.11 59.84 0.66 1.93 16 2 N -0.34 -5.36 4.06 -63.98 -0.26 -5.62 16 3 N -0.34 -5.31 12.56 31.31 0.39 -4.92 16 4 C 0.33 4.70 8.40 -154.65 -1.30 3.40 16 5 N -0.85 -8.37 9.15 31.29 0.29 -8.08 16 6 C -0.27 -4.05 8.55 -39.08 -0.33 -4.38 16 7 C 0.07 1.22 6.58 -82.18 -0.54 0.68 16 8 C 0.58 10.30 7.57 -12.64 -0.10 10.20 16 9 O -0.55 -10.67 14.55 5.25 0.08 -10.60 16 10 N -0.58 -10.22 2.97 -174.13 -0.52 -10.74 16 11 C 0.07 1.16 5.38 -3.71 -0.02 1.14 16 12 C -0.12 -2.65 5.15 -26.61 -0.14 -2.79 16 13 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 14 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 15 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -23.98 11.30 55.43 0.63 -23.36 16 18 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 23 C 0.11 1.98 6.43 -3.71 -0.02 1.95 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.10 1.32 6.49 -51.93 -0.34 0.99 16 27 H 0.40 3.33 8.96 -40.82 -0.37 2.96 16 28 H 0.41 3.11 8.96 -40.82 -0.37 2.75 16 29 H 0.17 2.22 5.77 -52.49 -0.30 1.91 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.65 3.40 -51.93 -0.18 1.47 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -30.50 313.65 -7.34 -37.84 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.15 Total: 6.88 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.53 Total: -52.72 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.50 -7.34 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579994519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.725 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds