Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28405 * 125.16164 * 2 1 4 4 C 1.30684 * 111.24170 * 180.26649 * 3 2 1 5 5 C 1.40456 * 107.92540 * 359.97438 * 4 3 2 6 6 N 1.39339 * 127.41877 * 179.97438 * 5 4 3 7 7 C 1.37340 * 125.16651 * 180.30389 * 2 1 3 8 8 C 1.46445 * 126.99374 * 359.71533 * 7 2 1 9 9 O 1.21720 * 120.00330 * 268.55458 * 8 7 2 10 10 N 1.34779 * 119.99917 * 88.56283 * 8 7 2 11 11 C 1.46924 * 120.63094 * 5.09722 * 10 8 7 12 12 C 1.53624 * 108.54083 * 126.37432 * 11 10 8 13 13 C 1.53041 * 109.24600 * 54.85864 * 12 11 10 14 14 C 1.53042 * 109.53300 * 298.51038 * 13 12 11 15 15 H 1.08997 * 109.50139 * 301.41548 * 14 13 12 16 16 C 1.50698 * 109.49699 * 181.31576 * 14 13 12 17 17 H 1.08001 * 119.99759 * 0.15863 * 16 14 13 18 18 C 1.37877 * 120.00170 * 180.16547 * 16 14 13 19 19 N 1.31510 * 119.99990 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99879 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47035 * 119.99811 * 20 18 16 23 23 H 1.48501 * 109.46664 * 239.99434 * 20 18 16 24 24 C 1.46927 * 120.63014 * 185.38611 * 10 8 7 25 25 H 1.09004 * 109.47448 * 264.60953 * 1 2 3 26 26 H 1.09001 * 109.47660 * 24.61165 * 1 2 3 27 27 H 1.09010 * 109.47040 * 144.61428 * 1 2 3 28 28 H 1.07998 * 126.03414 * 179.97438 * 4 3 2 29 29 H 0.97002 * 119.99987 * 179.97438 * 6 5 4 30 30 H 0.96997 * 120.00320 * 0.02562 * 6 5 4 31 31 H 1.09002 * 109.58603 * 246.20382 * 11 10 8 32 32 H 1.09000 * 109.59005 * 6.63345 * 11 10 8 33 33 H 1.08995 * 109.63437 * 294.86136 * 12 11 10 34 34 H 1.09004 * 109.45792 * 174.74362 * 12 11 10 35 35 H 1.08999 * 109.46182 * 178.49309 * 13 12 11 36 36 H 1.09000 * 109.45017 * 58.51792 * 13 12 11 37 37 H 0.97006 * 120.00080 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.58383 * 353.36214 * 24 10 8 39 39 H 1.08998 * 109.58853 * 113.79259 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2044 1.0498 0.0000 4 6 3.4728 0.7354 -0.0057 5 6 3.5709 -0.6657 -0.0092 6 7 4.7340 -1.4330 -0.0160 7 6 2.2559 -1.1227 -0.0060 8 6 1.8073 -2.5168 -0.0075 9 8 1.6504 -3.1069 1.0454 10 7 1.5683 -3.1464 -1.1750 11 6 1.8589 -2.4860 -2.4549 12 6 2.7615 -3.4094 -3.2871 13 6 2.0924 -4.7789 -3.4246 14 6 1.9133 -5.4024 -2.0385 15 1 2.8851 -5.4978 -1.5541 16 6 1.2839 -6.7646 -2.1772 17 1 1.0384 -7.1488 -3.1563 18 6 1.0212 -7.5203 -1.0543 19 7 1.3204 -7.0526 0.1378 20 14 0.2416 -9.2091 -1.2264 21 1 0.0051 -9.5011 -2.6630 22 1 1.1513 -10.2347 -0.6556 23 1 -1.0518 -9.2338 -0.4972 24 6 1.0062 -4.5038 -1.1920 25 1 -0.3634 -0.0965 1.0231 26 1 -0.3634 0.9343 -0.4280 27 1 -0.3634 -0.8379 -0.5952 28 1 4.2996 1.4302 -0.0073 29 1 4.6763 -2.4013 -0.0175 30 1 5.6014 -0.9990 -0.0184 31 1 0.9276 -2.3013 -2.9904 32 1 2.3706 -1.5414 -2.2708 33 1 3.7253 -3.5236 -2.7911 34 1 2.9105 -2.9764 -4.2763 35 1 2.7175 -5.4287 -4.0371 36 1 1.1178 -4.6608 -3.8982 37 1 1.1360 -7.5844 0.9279 38 1 0.9553 -4.8910 -0.1743 39 1 0.0069 -4.4802 -1.6266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580004603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 42.524430 kcal Electronic energy + Delta-G solvation = -22614.252776 eV Core-core repulsion = 19365.345273 eV Total energy + Delta-G solvation = -3248.907504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15347 -39.12436 -36.62978 -34.93636 -33.42228 -32.37302 -31.74318 -29.97018 -29.06555 -26.55142 -25.17403 -24.85239 -22.02346 -21.78370 -21.15911 -19.64772 -18.50999 -17.35859 -16.63187 -16.20126 -16.00655 -15.64478 -15.20150 -14.60771 -14.45367 -13.96900 -13.79498 -13.66906 -12.97092 -12.87692 -12.76704 -12.63844 -12.51072 -12.15424 -11.83775 -11.04879 -10.99612 -10.89088 -10.61797 -10.51541 -10.40819 -10.27064 -9.92940 -9.51711 -9.17627 -8.96879 -8.85441 -8.47328 -7.80951 -7.21915 -6.02973 -4.11957 2.02483 2.46093 2.97541 3.21785 3.28193 3.36535 3.39333 3.76353 4.11944 4.40301 4.75256 4.90296 5.16438 5.25808 5.26995 5.36704 5.42288 5.47951 5.53739 5.69199 5.75458 5.98069 6.17438 6.28532 6.42941 6.57389 6.61967 6.80851 6.93505 6.97072 7.10781 7.21697 7.59626 7.66442 7.82206 7.93234 7.95993 8.17561 8.31825 8.34647 8.76633 8.92632 9.54073 11.02174 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.005204 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.982386 B = 5379.575653 C = 5605.396147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.272 5.272 3 N -0.267 5.267 4 C -0.050 4.050 5 C 0.133 3.867 6 N -0.857 5.857 7 C -0.101 4.101 8 C 0.584 3.416 9 O -0.523 6.523 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.130 4.130 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.111 3.889 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.180 0.820 29 H 0.402 0.598 30 H 0.400 0.600 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 13.897 -3.718 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.065 5.065 3 N -0.100 5.100 4 C -0.231 4.231 5 C 0.021 3.979 6 N -0.400 5.400 7 C -0.232 4.232 8 C 0.368 3.632 9 O -0.398 6.398 10 N -0.326 5.326 11 C -0.012 4.012 12 C -0.168 4.168 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.009 4.009 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.197 0.803 29 H 0.231 0.769 30 H 0.228 0.772 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.311 14.434 -2.945 14.790 hybrid contribution 0.453 -1.746 -0.089 1.806 sum 1.764 12.688 -3.034 13.164 Atomic orbital electron populations 1.22051 0.73353 1.04854 1.04273 1.45020 1.06760 1.01361 1.53378 1.72785 1.03543 1.14260 1.19400 1.23040 0.93689 0.92565 1.13804 1.17925 0.86217 0.91140 1.02587 1.41248 1.03756 1.08156 1.86872 1.20652 0.90344 0.89325 1.22883 1.16884 0.78349 0.83643 0.84372 1.90868 1.51099 1.66778 1.31075 1.48534 1.61611 1.18139 1.04277 1.21689 0.98880 0.95677 0.84994 1.21986 0.99024 0.97332 0.98504 1.21639 0.99024 0.93808 1.00390 1.18962 0.96080 0.93116 0.89678 0.95272 1.21113 1.41512 1.00369 0.92931 0.92291 1.25055 0.95452 0.98101 0.95407 1.69892 1.46837 1.37371 0.97646 0.86544 0.79067 0.84321 0.78131 1.19788 1.20992 1.20979 1.22369 0.95251 0.76712 1.06542 0.89991 0.88561 0.89280 0.80306 0.76894 0.77158 0.92304 0.91002 0.92142 0.92319 0.92967 0.93198 0.92675 0.85841 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.11 59.84 0.66 1.77 16 2 N -0.27 -4.12 3.77 -63.71 -0.24 -4.36 16 3 N -0.27 -3.94 11.87 30.72 0.36 -3.57 16 4 C -0.05 -0.67 12.05 -17.21 -0.21 -0.88 16 5 C 0.13 2.02 7.27 -83.25 -0.60 1.42 16 6 N -0.86 -11.06 9.12 32.71 0.30 -10.76 16 7 C -0.10 -1.75 4.79 -81.73 -0.39 -2.14 16 8 C 0.58 11.97 6.96 -12.95 -0.09 11.88 16 9 O -0.52 -13.09 16.53 5.17 0.09 -13.00 16 10 N -0.59 -11.69 2.97 -174.12 -0.52 -12.21 16 11 C 0.11 1.79 6.34 -3.49 -0.02 1.77 16 12 C -0.13 -2.10 6.10 -26.39 -0.16 -2.26 16 13 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 14 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.79 8.56 -34.44 -0.29 -14.08 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.21 11.39 55.43 0.63 -24.58 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.11 2.61 5.41 -3.71 -0.02 2.59 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.03 7.95 -51.92 -0.41 0.62 16 28 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.40 5.80 8.86 -40.82 -0.36 5.44 16 30 H 0.40 3.79 8.96 -40.82 -0.37 3.43 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.10 6.22 -51.93 -0.32 0.77 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.12 3.41 5.11 -51.93 -0.27 3.15 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -32.19 322.22 -6.60 -38.79 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.50 Total: 8.79 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.56 Total: 0.16 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.54 Total: -55.48 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.19 -6.60 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580004603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.313 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds